Wall clock time and date at job start Sun Mar 7 2021 10:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86304 * 109.47184 * 2 1 4 4 C 1.86302 * 109.47145 * 239.99913 * 2 1 3 5 5 C 1.86303 * 109.47281 * 119.99771 * 2 1 3 6 6 N 1.46503 * 109.46820 * 59.99853 * 5 2 1 7 7 C 1.35836 * 126.05267 * 90.00348 * 6 5 2 8 8 C 1.35759 * 107.55525 * 180.02562 * 7 6 5 9 9 N 1.40743 * 126.07680 * 179.97438 * 8 7 6 10 10 C 1.34773 * 120.00154 * 180.02562 * 9 8 7 11 11 O 1.21643 * 119.99862 * 359.97438 * 10 9 8 12 12 C 1.47368 * 120.00261 * 179.72546 * 10 9 8 13 13 C 1.36424 * 127.19174 * 359.95343 * 12 10 9 14 14 O 1.33664 * 108.39628 * 179.87514 * 13 12 10 15 15 C 1.34212 * 110.90490 * 0.41158 * 14 13 12 16 16 C 1.50697 * 125.43725 * 179.72622 * 15 14 13 17 17 O 1.42898 * 109.47618 * 245.02442 * 16 15 14 18 18 Si 1.86301 * 109.47220 * 5.02536 * 16 15 14 19 19 H 1.48494 * 109.47327 * 179.97438 * 18 16 15 20 20 H 1.48495 * 109.47358 * 300.00280 * 18 16 15 21 21 H 1.48511 * 109.47023 * 59.99984 * 18 16 15 22 22 C 1.34182 * 109.12827 * 359.74897 * 15 14 13 23 23 C 1.40257 * 107.84116 * 0.24110 * 8 7 6 24 24 N 1.30825 * 108.33723 * 359.59298 * 23 8 7 25 25 H 1.09004 * 109.47226 * 300.00589 * 1 2 3 26 26 H 1.09000 * 109.47170 * 59.99931 * 1 2 3 27 27 H 1.09000 * 109.47230 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47103 * 180.02562 * 3 2 1 29 29 H 1.09010 * 109.46985 * 299.99545 * 3 2 1 30 30 H 1.08992 * 109.47230 * 59.99891 * 3 2 1 31 31 H 1.08999 * 109.46807 * 299.99628 * 4 2 1 32 32 H 1.09000 * 109.46959 * 60.00028 * 4 2 1 33 33 H 1.09000 * 109.46916 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.46957 * 300.00394 * 5 2 1 35 35 H 1.08995 * 109.47129 * 179.97438 * 5 2 1 36 36 H 1.07994 * 126.21854 * 0.02562 * 7 6 5 37 37 H 0.97000 * 119.99733 * 359.97438 * 9 8 7 38 38 H 1.07999 * 125.79701 * 0.02562 * 13 12 10 39 39 H 1.09000 * 109.47499 * 125.02546 * 16 15 14 40 40 H 0.96695 * 114.00439 * 179.97438 * 17 16 15 41 41 H 1.07997 * 127.02545 * 179.97438 * 22 15 14 42 42 H 1.07996 * 125.82604 * 179.75359 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8782 1.5212 6 7 1.9956 -2.2594 1.5212 7 6 2.6258 -3.3302 0.9721 8 6 1.8447 -4.4195 1.1870 9 7 2.1281 -5.7362 0.7785 10 6 1.2614 -6.7298 1.0578 11 8 0.2344 -6.4886 1.6634 12 6 1.5553 -8.1074 0.6248 13 6 2.6515 -8.5397 -0.0627 14 8 2.5359 -9.8572 -0.2556 15 6 1.3925 -10.3202 0.2731 16 6 0.9313 -11.7544 0.2378 17 8 -0.2596 -11.8527 -0.5460 18 14 2.2620 -12.8162 -0.5189 19 1 1.8078 -14.2296 -0.5532 20 1 2.5398 -12.3514 -1.9016 21 1 3.4996 -12.7142 0.2956 22 6 0.7253 -9.3021 0.8378 23 6 0.7021 -3.9985 1.8830 24 7 0.7959 -2.7096 2.0868 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.5740 1.7565 -0.0005 29 1 2.1207 2.2703 -0.8901 30 1 2.1207 2.2703 0.8899 31 1 2.1207 -1.9059 -1.5210 32 1 2.1206 -0.3644 -2.4111 33 1 3.5740 -0.8786 -1.5209 34 1 2.1206 -0.3643 2.4111 35 1 3.5740 -0.8786 1.5209 36 1 3.5755 -3.3172 0.4582 37 1 2.9469 -5.9284 0.2953 38 1 3.4741 -7.9225 -0.3926 39 1 0.7274 -12.0957 1.2527 40 1 -0.6136 -12.7501 -0.6127 41 1 -0.2270 -9.3504 1.3449 42 1 -0.1143 -4.6308 2.1991 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608520_13456056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:33:12 Heat of formation + Delta-G solvation = -2.819892 kcal Electronic energy + Delta-G solvation = -24271.227471 eV Core-core repulsion = 20572.021122 eV Total energy + Delta-G solvation = -3699.206349 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.71685 -42.18559 -40.14376 -37.99381 -35.79973 -34.10853 -33.47744 -32.03225 -30.27183 -29.66838 -28.56971 -28.42821 -27.24983 -26.55274 -24.92436 -22.59003 -22.12517 -21.86827 -20.33384 -19.07024 -18.76906 -18.20676 -17.27583 -17.11407 -16.72266 -16.44715 -16.20331 -15.94416 -15.57121 -15.09850 -14.75346 -14.72101 -14.34431 -14.30012 -14.10790 -14.06139 -13.92665 -13.79954 -13.67232 -13.51458 -13.40344 -13.23750 -13.15211 -12.75783 -12.24331 -12.16304 -12.06731 -11.61648 -11.31763 -11.02778 -10.93881 -10.90922 -10.85008 -10.57096 -9.98020 -9.79502 -8.53744 0.17784 0.76889 0.93678 0.99625 1.27804 1.31887 1.47492 1.51974 1.67636 1.69191 1.86110 1.87971 1.90406 2.20945 2.42866 2.54667 3.22528 3.51420 3.55772 3.71938 3.82888 3.91653 4.15665 4.28672 4.40029 4.50128 4.57162 4.59447 4.61139 4.62285 4.64111 4.72761 4.78299 4.78789 4.81186 4.82802 5.19400 5.26336 5.33751 5.40981 5.59489 5.86445 5.96799 6.06635 6.39413 6.42041 6.85768 7.21312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.447 4.447 2 Si 1.019 2.981 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.168 4.168 6 N -0.344 5.344 7 C 0.014 3.986 8 C -0.003 4.003 9 N -0.640 5.640 10 C 0.590 3.410 11 O -0.519 6.519 12 C -0.233 4.233 13 C 0.034 3.966 14 O -0.170 6.170 15 C -0.014 4.014 16 C -0.044 4.044 17 O -0.542 6.542 18 Si 0.955 3.045 19 H -0.247 1.247 20 H -0.245 1.245 21 H -0.246 1.246 22 C -0.116 4.116 23 C 0.048 3.952 24 N -0.281 5.281 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.176 0.824 37 H 0.407 0.593 38 H 0.215 0.785 39 H 0.098 0.902 40 H 0.389 0.611 41 H 0.165 0.835 42 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.495 -1.013 -2.493 6.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.555 4.555 2 Si 1.214 2.786 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.334 4.334 6 N -0.127 5.127 7 C -0.134 4.134 8 C -0.107 4.107 9 N -0.285 5.285 10 C 0.379 3.621 11 O -0.395 6.395 12 C -0.238 4.238 13 C -0.037 4.037 14 O -0.066 6.066 15 C -0.062 4.062 16 C -0.154 4.154 17 O -0.349 6.349 18 Si 0.774 3.226 19 H -0.171 1.171 20 H -0.168 1.168 21 H -0.170 1.170 22 C -0.135 4.135 23 C -0.138 4.138 24 N -0.104 5.104 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.123 0.877 35 H 0.117 0.883 36 H 0.193 0.807 37 H 0.242 0.758 38 H 0.232 0.768 39 H 0.116 0.884 40 H 0.238 0.762 41 H 0.182 0.818 42 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 5.203 0.185 -2.068 5.602 hybrid contribution 0.466 -0.925 -0.210 1.057 sum 5.669 -0.741 -2.277 6.154 Atomic orbital electron populations 1.26072 1.20051 1.04944 1.04403 0.79374 0.68119 0.66351 0.64788 1.26099 1.06360 1.18262 1.05082 1.26126 1.06095 1.08314 1.15226 1.26954 1.04407 0.83248 1.18821 1.47982 1.15652 1.06358 1.42703 1.21850 1.00206 0.86509 1.04858 1.17614 0.98595 0.84509 1.09991 1.42546 1.23793 1.04792 1.57353 1.17170 0.82927 0.82968 0.79017 1.90705 1.25627 1.82989 1.40191 1.21343 0.98492 0.94586 1.09387 1.24446 0.99428 0.81356 0.98474 1.83658 1.37691 1.22967 1.62254 1.21157 0.86865 0.95993 1.02168 1.23830 0.96670 0.94357 1.00524 1.86482 1.41057 1.34723 1.72655 0.85550 0.77277 0.78044 0.81684 1.17071 1.16777 1.16963 1.22476 1.00481 0.88756 1.01828 1.24491 0.98916 0.91756 0.98671 1.77463 1.01148 1.12261 1.19539 0.91032 0.91235 0.90967 0.90990 0.90584 0.90859 0.91101 0.90746 0.91140 0.87690 0.88323 0.80693 0.75841 0.76843 0.88439 0.76185 0.81761 0.77854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 -0.02 8.65 101.05 0.87 0.86 16 2 Si 1.02 -2.98 12.79 -169.99 -2.17 -5.15 16 3 C -0.45 1.25 8.65 101.05 0.87 2.13 16 4 C -0.45 1.00 8.65 101.05 0.87 1.87 16 5 C -0.17 0.30 5.59 59.85 0.33 0.63 16 6 N -0.34 -0.47 3.01 -9.17 -0.03 -0.50 16 7 C 0.01 0.00 11.44 -16.67 -0.19 -0.19 16 8 C 0.00 -0.01 6.90 -83.89 -0.58 -0.59 16 9 N -0.64 -0.19 5.46 -11.02 -0.06 -0.25 16 10 C 0.59 1.76 7.78 -12.55 -0.10 1.66 16 11 O -0.52 -3.37 14.14 5.24 0.07 -3.30 16 12 C -0.23 -0.35 6.31 -103.28 -0.65 -1.01 16 13 C 0.03 -0.04 11.61 30.08 0.35 0.31 16 14 O -0.17 -0.12 8.90 7.63 0.07 -0.06 16 15 C -0.01 -0.02 6.22 -35.74 -0.22 -0.24 16 16 C -0.04 0.05 2.96 36.00 0.11 0.15 16 17 O -0.54 0.30 12.86 -35.23 -0.45 -0.15 16 18 Si 0.95 -1.22 27.38 -169.99 -4.65 -5.87 16 19 H -0.25 0.42 7.11 56.52 0.40 0.82 16 20 H -0.24 -0.18 7.11 56.52 0.40 0.22 16 21 H -0.25 0.07 7.11 56.52 0.40 0.47 16 22 C -0.12 -0.27 10.90 -37.45 -0.41 -0.68 16 23 C 0.05 0.23 10.84 -17.22 -0.19 0.04 16 24 N -0.28 -1.29 12.56 30.70 0.39 -0.90 16 25 H 0.07 0.02 7.96 -51.93 -0.41 -0.39 16 26 H 0.07 -0.02 7.96 -51.93 -0.41 -0.44 16 27 H 0.07 0.15 7.96 -51.93 -0.41 -0.27 16 28 H 0.07 -0.24 7.96 -51.93 -0.41 -0.65 16 29 H 0.08 -0.18 7.96 -51.92 -0.41 -0.60 16 30 H 0.07 -0.19 7.96 -51.93 -0.41 -0.61 16 31 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 32 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 33 H 0.07 -0.22 7.96 -51.93 -0.41 -0.64 16 34 H 0.10 -0.17 7.96 -51.93 -0.41 -0.58 16 35 H 0.10 -0.39 7.96 -51.93 -0.41 -0.81 16 36 H 0.18 -0.66 8.06 -52.49 -0.42 -1.08 16 37 H 0.41 -1.53 7.80 -40.82 -0.32 -1.85 16 38 H 0.22 -1.34 7.47 -52.49 -0.39 -1.74 16 39 H 0.10 -0.33 7.96 -51.93 -0.41 -0.75 16 40 H 0.39 -2.10 8.74 45.56 0.40 -1.70 16 41 H 0.16 0.36 8.06 -52.49 -0.42 -0.06 16 42 H 0.21 1.16 5.91 -52.49 -0.31 0.85 16 LS Contribution 366.52 15.07 5.52 5.52 Total: 0.00 -11.07 366.52 -5.47 -16.53 By element: Atomic # 1 Polarization: -5.61 SS G_CDS: -5.23 Total: -10.84 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 1.08 Total: 4.96 kcal Atomic # 7 Polarization: -1.94 SS G_CDS: 0.30 Total: -1.64 kcal Atomic # 8 Polarization: -3.20 SS G_CDS: -0.31 Total: -3.51 kcal Atomic # 14 Polarization: -4.20 SS G_CDS: -6.83 Total: -11.02 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -11.07 -5.47 -16.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_13456056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.712 kcal (2) G-P(sol) polarization free energy of solvation -11.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds