Wall clock time and date at job start Sun Mar 7 2021 10:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86304 * 109.47184 * 2 1 4 4 C 1.86302 * 109.47145 * 239.99913 * 2 1 3 5 5 C 1.86303 * 109.47281 * 119.99771 * 2 1 3 6 6 N 1.46503 * 109.46820 * 59.99853 * 5 2 1 7 7 C 1.35836 * 126.05267 * 90.00348 * 6 5 2 8 8 C 1.35759 * 107.55525 * 180.02562 * 7 6 5 9 9 N 1.40743 * 126.07680 * 179.97438 * 8 7 6 10 10 C 1.34773 * 120.00154 * 180.02562 * 9 8 7 11 11 O 1.21643 * 119.99862 * 359.97438 * 10 9 8 12 12 C 1.47368 * 120.00261 * 179.72546 * 10 9 8 13 13 C 1.36424 * 127.19174 * 359.95343 * 12 10 9 14 14 O 1.33664 * 108.39628 * 179.87514 * 13 12 10 15 15 C 1.34212 * 110.90490 * 0.41158 * 14 13 12 16 16 C 1.50697 * 125.43725 * 179.72622 * 15 14 13 17 17 O 1.42898 * 109.47618 * 245.02442 * 16 15 14 18 18 Si 1.86301 * 109.47220 * 5.02536 * 16 15 14 19 19 H 1.48494 * 109.47327 * 179.97438 * 18 16 15 20 20 H 1.48495 * 109.47358 * 300.00280 * 18 16 15 21 21 H 1.48511 * 109.47023 * 59.99984 * 18 16 15 22 22 C 1.34182 * 109.12827 * 359.74897 * 15 14 13 23 23 C 1.40257 * 107.84116 * 0.24110 * 8 7 6 24 24 N 1.30825 * 108.33723 * 359.59298 * 23 8 7 25 25 H 1.09004 * 109.47226 * 300.00589 * 1 2 3 26 26 H 1.09000 * 109.47170 * 59.99931 * 1 2 3 27 27 H 1.09000 * 109.47230 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47103 * 180.02562 * 3 2 1 29 29 H 1.09010 * 109.46985 * 299.99545 * 3 2 1 30 30 H 1.08992 * 109.47230 * 59.99891 * 3 2 1 31 31 H 1.08999 * 109.46807 * 299.99628 * 4 2 1 32 32 H 1.09000 * 109.46959 * 60.00028 * 4 2 1 33 33 H 1.09000 * 109.46916 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.46957 * 300.00394 * 5 2 1 35 35 H 1.08995 * 109.47129 * 179.97438 * 5 2 1 36 36 H 1.07994 * 126.21854 * 0.02562 * 7 6 5 37 37 H 0.97000 * 119.99733 * 359.97438 * 9 8 7 38 38 H 1.07999 * 125.79701 * 0.02562 * 13 12 10 39 39 H 1.09000 * 109.47499 * 125.02546 * 16 15 14 40 40 H 0.96695 * 114.00439 * 179.97438 * 17 16 15 41 41 H 1.07997 * 127.02545 * 179.97438 * 22 15 14 42 42 H 1.07996 * 125.82604 * 179.75359 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8782 1.5212 6 7 1.9956 -2.2594 1.5212 7 6 2.6258 -3.3302 0.9721 8 6 1.8447 -4.4195 1.1870 9 7 2.1281 -5.7362 0.7785 10 6 1.2614 -6.7298 1.0578 11 8 0.2344 -6.4886 1.6634 12 6 1.5553 -8.1074 0.6248 13 6 2.6515 -8.5397 -0.0627 14 8 2.5359 -9.8572 -0.2556 15 6 1.3925 -10.3202 0.2731 16 6 0.9313 -11.7544 0.2378 17 8 -0.2596 -11.8527 -0.5460 18 14 2.2620 -12.8162 -0.5189 19 1 1.8078 -14.2296 -0.5532 20 1 2.5398 -12.3514 -1.9016 21 1 3.4996 -12.7142 0.2956 22 6 0.7253 -9.3021 0.8378 23 6 0.7021 -3.9985 1.8830 24 7 0.7959 -2.7096 2.0868 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.5740 1.7565 -0.0005 29 1 2.1207 2.2703 -0.8901 30 1 2.1207 2.2703 0.8899 31 1 2.1207 -1.9059 -1.5210 32 1 2.1206 -0.3644 -2.4111 33 1 3.5740 -0.8786 -1.5209 34 1 2.1206 -0.3643 2.4111 35 1 3.5740 -0.8786 1.5209 36 1 3.5755 -3.3172 0.4582 37 1 2.9469 -5.9284 0.2953 38 1 3.4741 -7.9225 -0.3926 39 1 0.7274 -12.0957 1.2527 40 1 -0.6136 -12.7501 -0.6127 41 1 -0.2270 -9.3504 1.3449 42 1 -0.1143 -4.6308 2.1991 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_13456056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:33:11 Heat of formation + Delta-G solvation = -3.560455 kcal Electronic energy + Delta-G solvation = -24271.259584 eV Core-core repulsion = 20572.021122 eV Total energy + Delta-G solvation = -3699.238462 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.126 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.73613 -42.30770 -40.31961 -37.89306 -35.96209 -34.17445 -33.54515 -32.03702 -30.33663 -29.51269 -28.37536 -28.32964 -27.23780 -26.50130 -25.01009 -22.71045 -22.18174 -21.94734 -20.42876 -19.06003 -18.68148 -18.23997 -17.32595 -17.16695 -16.77355 -16.52102 -16.15611 -15.87597 -15.70529 -15.21981 -14.82833 -14.62806 -14.18802 -14.18087 -14.14446 -14.01030 -13.87204 -13.82083 -13.65288 -13.41146 -13.20714 -13.13648 -13.01639 -12.70028 -12.21533 -12.13999 -12.02116 -11.76602 -11.38028 -11.16615 -10.95090 -10.84411 -10.79863 -10.46031 -10.03092 -9.79416 -8.62835 0.18073 0.72624 0.89436 1.07924 1.35378 1.39159 1.56224 1.67488 1.69677 1.75913 1.88191 1.96390 1.99386 2.20171 2.41008 2.58448 3.38227 3.48863 3.70681 3.76709 3.91039 4.00942 4.25450 4.31023 4.43035 4.52665 4.63934 4.69144 4.71053 4.73379 4.75487 4.83807 4.85075 4.87886 4.89132 4.89371 5.07717 5.15105 5.51504 5.61243 5.66337 5.75788 5.84697 6.08372 6.42839 6.69323 6.75611 7.13571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.477 4.477 2 Si 1.096 2.904 3 C -0.455 4.455 4 C -0.458 4.458 5 C -0.190 4.190 6 N -0.340 5.340 7 C 0.037 3.963 8 C -0.025 4.025 9 N -0.620 5.620 10 C 0.586 3.414 11 O -0.569 6.569 12 C -0.263 4.263 13 C 0.065 3.935 14 O -0.175 6.175 15 C -0.022 4.022 16 C -0.049 4.049 17 O -0.563 6.563 18 Si 0.996 3.004 19 H -0.238 1.238 20 H -0.275 1.275 21 H -0.259 1.259 22 C -0.144 4.144 23 C 0.020 3.980 24 N -0.319 5.319 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.044 0.956 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.134 0.866 36 H 0.225 0.775 37 H 0.428 0.572 38 H 0.267 0.733 39 H 0.120 0.880 40 H 0.408 0.592 41 H 0.151 0.849 42 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.858 -0.651 -3.662 9.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.581 4.581 2 Si 1.285 2.715 3 C -0.563 4.563 4 C -0.566 4.566 5 C -0.353 4.353 6 N -0.122 5.122 7 C -0.113 4.113 8 C -0.129 4.129 9 N -0.267 5.267 10 C 0.376 3.624 11 O -0.449 6.449 12 C -0.267 4.267 13 C -0.005 4.005 14 O -0.071 6.071 15 C -0.070 4.070 16 C -0.158 4.158 17 O -0.374 6.374 18 Si 0.818 3.182 19 H -0.160 1.160 20 H -0.200 1.200 21 H -0.183 1.183 22 C -0.164 4.164 23 C -0.165 4.165 24 N -0.143 5.143 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.064 0.936 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.121 0.879 35 H 0.152 0.848 36 H 0.242 0.758 37 H 0.267 0.733 38 H 0.283 0.717 39 H 0.137 0.863 40 H 0.260 0.740 41 H 0.169 0.831 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 8.538 0.523 -3.236 9.146 hybrid contribution -0.594 -0.942 0.126 1.121 sum 7.945 -0.419 -3.110 8.542 Atomic orbital electron populations 1.26538 1.24637 1.02968 1.03925 0.78247 0.63837 0.65884 0.63556 1.26139 1.07356 1.17847 1.04985 1.26213 1.07517 1.07652 1.15200 1.27409 1.06730 0.81691 1.19486 1.48308 1.14608 1.07752 1.41520 1.22564 1.00806 0.84943 1.02947 1.17762 0.98459 0.85833 1.10876 1.42324 1.24022 1.03650 1.56676 1.17451 0.82615 0.83885 0.78485 1.90689 1.27800 1.83753 1.42618 1.21286 1.00030 0.93675 1.11732 1.25367 0.99100 0.80727 0.95330 1.83698 1.37433 1.23877 1.62120 1.21532 0.86862 0.96821 1.01745 1.24046 0.96779 0.93084 1.01876 1.86434 1.41343 1.36751 1.72856 0.84981 0.76119 0.78009 0.79114 1.16049 1.20003 1.18317 1.22550 1.00761 0.90091 1.02987 1.24290 0.99813 0.92080 1.00280 1.77387 1.03322 1.12328 1.21253 0.91950 0.91297 0.93621 0.89541 0.90762 0.90978 0.92078 0.91034 0.89118 0.87942 0.84755 0.75846 0.73289 0.71719 0.86271 0.73960 0.83114 0.80326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 -0.91 8.65 113.37 0.98 0.07 16 2 Si 1.10 -7.54 12.79 68.60 0.88 -6.66 16 3 C -0.45 3.37 8.65 113.37 0.98 4.36 16 4 C -0.46 2.97 8.65 113.37 0.98 3.95 16 5 C -0.19 0.97 5.59 127.77 0.71 1.69 16 6 N -0.34 -0.78 3.01 -182.91 -0.55 -1.33 16 7 C 0.04 -0.05 11.44 83.50 0.96 0.90 16 8 C -0.02 -0.12 6.90 37.62 0.26 0.14 16 9 N -0.62 -0.34 5.46 -307.01 -1.68 -2.02 16 10 C 0.59 4.57 7.78 86.65 0.67 5.25 16 11 O -0.57 -9.67 14.14 -4.17 -0.06 -9.72 16 12 C -0.26 -1.06 6.31 -18.99 -0.12 -1.18 16 13 C 0.06 -0.24 11.61 67.40 0.78 0.54 16 14 O -0.18 -0.17 8.90 4.39 0.04 -0.13 16 15 C -0.02 -0.07 6.22 24.76 0.15 0.08 16 16 C -0.05 0.09 2.96 71.23 0.21 0.30 16 17 O -0.56 0.32 12.86 -148.98 -1.92 -1.60 16 18 Si 1.00 -2.81 27.38 68.60 1.88 -0.93 16 19 H -0.24 1.10 7.11 99.48 0.71 1.80 16 20 H -0.28 -0.56 7.11 99.48 0.71 0.15 16 21 H -0.26 0.24 7.11 99.48 0.71 0.95 16 22 C -0.14 -0.98 10.90 23.65 0.26 -0.72 16 23 C 0.02 0.25 10.84 85.33 0.92 1.18 16 24 N -0.32 -3.62 12.56 -56.77 -0.71 -4.33 16 25 H 0.06 0.19 7.96 -2.38 -0.02 0.17 16 26 H 0.07 0.08 7.96 -2.39 -0.02 0.06 16 27 H 0.04 0.33 7.96 -2.39 -0.02 0.31 16 28 H 0.09 -0.84 7.96 -2.39 -0.02 -0.86 16 29 H 0.07 -0.47 7.96 -2.38 -0.02 -0.49 16 30 H 0.07 -0.48 7.96 -2.39 -0.02 -0.50 16 31 H 0.06 -0.23 7.96 -2.39 -0.02 -0.25 16 32 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 33 H 0.09 -0.92 7.96 -2.39 -0.02 -0.94 16 34 H 0.10 -0.40 7.96 -2.39 -0.02 -0.42 16 35 H 0.13 -1.61 7.96 -2.39 -0.02 -1.63 16 36 H 0.23 -2.73 8.06 -2.91 -0.02 -2.75 16 37 H 0.43 -4.11 7.80 -92.71 -0.72 -4.83 16 38 H 0.27 -4.31 7.47 -2.91 -0.02 -4.34 16 39 H 0.12 -0.81 7.96 -2.39 -0.02 -0.83 16 40 H 0.41 -4.38 8.74 -74.06 -0.65 -5.03 16 41 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 42 H 0.18 3.00 5.91 -2.91 -0.02 2.98 16 Total: 0.00 -31.88 366.52 6.07 -25.80 By element: Atomic # 1 Polarization: -16.05 SS G_CDS: 0.44 Total: -15.61 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 7.76 Total: 16.54 kcal Atomic # 7 Polarization: -4.74 SS G_CDS: -2.94 Total: -7.68 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -1.94 Total: -11.45 kcal Atomic # 14 Polarization: -10.35 SS G_CDS: 2.76 Total: -7.60 kcal Total: -31.88 6.07 -25.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_13456056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.244 kcal (2) G-P(sol) polarization free energy of solvation -31.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds