Wall clock time and date at job start Sun Mar 7 2021 10:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37870 * 126.45613 * 2 1 4 4 C 1.46669 * 126.23687 * 0.03763 * 3 2 1 5 5 O 1.21727 * 119.99340 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00508 * 179.97438 * 4 3 2 7 7 C 1.40720 * 120.00157 * 179.97438 * 6 4 3 8 8 C 1.35765 * 126.08104 * 180.02562 * 7 6 4 9 9 N 1.35832 * 107.55876 * 180.02562 * 8 7 6 10 10 C 1.46497 * 126.05745 * 179.97438 * 9 8 7 11 11 Si 1.86293 * 109.47533 * 89.99126 * 10 9 8 12 12 C 1.86305 * 109.47175 * 60.00305 * 11 10 9 13 13 C 1.86302 * 109.47110 * 180.02562 * 11 10 9 14 14 C 1.86297 * 109.47209 * 300.00430 * 11 10 9 15 15 N 1.40075 * 107.89404 * 359.97438 * 9 8 7 16 16 C 1.30842 * 108.36993 * 359.71986 * 15 9 8 17 17 N 1.37649 * 107.53258 * 179.90128 * 3 2 1 18 18 C 1.35549 * 108.64235 * 0.37158 * 17 3 2 19 19 C 1.50707 * 125.56301 * 179.75414 * 18 17 3 20 20 O 1.42895 * 109.47145 * 120.02143 * 19 18 17 21 21 Si 1.86294 * 109.47022 * 0.02562 * 19 18 17 22 22 H 1.48497 * 109.47175 * 60.00324 * 21 19 18 23 23 H 1.48499 * 109.47157 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47386 * 300.00085 * 21 19 18 25 25 C 1.35443 * 108.87455 * 359.76817 * 18 17 3 26 26 H 1.09002 * 109.47152 * 269.70988 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.71088 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.71069 * 1 2 3 29 29 H 0.97002 * 119.99887 * 0.02562 * 6 4 3 30 30 H 1.08000 * 126.21964 * 359.97438 * 8 7 6 31 31 H 1.09000 * 109.47090 * 210.00180 * 10 9 8 32 32 H 1.09010 * 109.46539 * 329.99062 * 10 9 8 33 33 H 1.09000 * 109.47044 * 60.00063 * 12 11 10 34 34 H 1.08998 * 109.47051 * 179.97438 * 12 11 10 35 35 H 1.09000 * 109.47005 * 300.00241 * 12 11 10 36 36 H 1.09000 * 109.47417 * 60.00295 * 13 11 10 37 37 H 1.08997 * 109.46829 * 180.02562 * 13 11 10 38 38 H 1.09000 * 109.47157 * 299.99966 * 13 11 10 39 39 H 1.08999 * 109.47431 * 60.00086 * 14 11 10 40 40 H 1.08998 * 109.47106 * 180.02562 * 14 11 10 41 41 H 1.09000 * 109.47131 * 299.99591 * 14 11 10 42 42 H 1.07997 * 125.83401 * 180.25959 * 16 15 9 43 43 H 0.97002 * 125.67653 * 180.14342 * 17 3 2 44 44 H 1.09003 * 109.46701 * 240.02579 * 19 18 17 45 45 H 0.96698 * 114.00118 * 299.99403 * 20 19 18 46 46 H 1.07995 * 126.07152 * 180.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.1089 0.0000 4 6 1.8899 2.5092 0.0008 5 8 0.7024 2.7765 0.0010 6 7 2.8037 3.4999 0.0012 7 6 2.3850 4.8433 0.0014 8 6 3.1946 5.9332 0.0013 9 7 2.3994 7.0344 0.0022 10 6 2.8548 8.4268 0.0029 11 14 3.0478 9.0181 -1.7531 12 6 1.4089 8.9013 -2.6313 13 6 3.6276 10.7886 -1.7520 14 6 4.3004 7.9556 -2.6321 15 7 1.0668 6.6029 0.0022 16 6 1.0569 5.2946 -0.0047 17 7 3.6284 0.6625 0.0023 18 6 3.6217 -0.6930 -0.0047 19 6 4.8434 -1.5754 -0.0102 20 8 4.8357 -2.4067 1.1520 21 14 6.3752 -0.5153 -0.0052 22 1 6.3846 0.3353 1.2120 23 1 7.5790 -1.3848 -0.0113 24 1 6.3833 0.3487 -1.2129 25 6 2.3380 -1.1248 -0.0062 26 1 -0.3633 -0.0052 1.0277 27 1 -0.3633 -0.8874 -0.5183 28 1 -0.3633 0.8926 -0.5094 29 1 3.7500 3.2868 0.0006 30 1 4.2746 5.9258 0.0015 31 1 2.1220 9.0484 0.5173 32 1 3.8137 8.4951 0.5168 33 1 0.6760 9.5230 -2.1171 34 1 1.5217 9.2478 -3.6586 35 1 1.0700 7.8654 -2.6319 36 1 4.5866 10.8566 -1.2383 37 1 3.7401 11.1347 -2.7794 38 1 2.8950 11.4105 -1.2376 39 1 3.9615 6.9196 -2.6328 40 1 4.4136 8.3018 -3.6594 41 1 5.2593 8.0239 -2.1183 42 1 0.1767 4.6690 -0.0105 43 1 4.4190 1.2244 0.0048 44 1 4.8365 -2.1998 -0.9037 45 1 4.8413 -1.9171 1.9859 46 1 2.0137 -2.1549 -0.0109 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_13940406.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:33:21 Heat of formation + Delta-G solvation = 19.887397 kcal Electronic energy + Delta-G solvation = -26566.364339 eV Core-core repulsion = 22810.323696 eV Total energy + Delta-G solvation = -3756.040644 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.76188 -42.19472 -40.14187 -37.68748 -36.11404 -33.82186 -33.61412 -31.66543 -30.31579 -29.53711 -28.40106 -28.38808 -28.33965 -27.45678 -26.31603 -23.48010 -22.38895 -21.84795 -21.34308 -20.34161 -19.55278 -18.40255 -17.86797 -16.88348 -16.80077 -16.72134 -16.44005 -15.91021 -15.61674 -15.31966 -15.04412 -14.73353 -14.44626 -14.21826 -14.17219 -14.00064 -13.99451 -13.86047 -13.84067 -13.59074 -13.44396 -13.42081 -13.22516 -13.16329 -13.04134 -12.90310 -12.56560 -12.23901 -12.20002 -12.02263 -11.79542 -11.41269 -11.07349 -10.86494 -10.82362 -10.50160 -10.06555 -9.82502 -9.30493 -8.62961 0.16248 0.80123 1.03877 1.31789 1.35960 1.38841 1.51415 1.64943 1.76239 1.77322 1.85657 1.91727 2.00327 2.19024 2.36972 2.56001 3.44600 3.65093 3.71300 3.76792 3.94601 4.13505 4.22486 4.26354 4.53767 4.59193 4.66403 4.68575 4.71141 4.73337 4.74620 4.80990 4.81591 4.84936 4.85549 4.86867 4.89960 5.00960 5.14879 5.37114 5.50135 5.58332 5.62987 5.64083 5.73365 5.83897 6.03802 6.22982 6.38951 6.66410 6.67175 7.03411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.083 4.083 3 C -0.061 4.061 4 C 0.587 3.413 5 O -0.545 6.545 6 N -0.631 5.631 7 C -0.024 4.024 8 C 0.033 3.967 9 N -0.339 5.339 10 C -0.190 4.190 11 Si 1.094 2.906 12 C -0.475 4.475 13 C -0.455 4.455 14 C -0.459 4.459 15 N -0.316 5.316 16 C 0.025 3.975 17 N -0.529 5.529 18 C 0.031 3.969 19 C -0.055 4.055 20 O -0.545 6.545 21 Si 0.960 3.040 22 H -0.240 1.240 23 H -0.259 1.259 24 H -0.243 1.243 25 C -0.186 4.186 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.419 0.581 30 H 0.221 0.779 31 H 0.103 0.897 32 H 0.133 0.867 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.045 0.955 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.186 0.814 43 H 0.422 0.578 44 H 0.140 0.860 45 H 0.391 0.609 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.874 1.998 -0.130 10.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.174 4.174 4 C 0.376 3.624 5 O -0.422 6.422 6 N -0.276 5.276 7 C -0.129 4.129 8 C -0.117 4.117 9 N -0.121 5.121 10 C -0.353 4.353 11 Si 1.283 2.717 12 C -0.579 4.579 13 C -0.563 4.563 14 C -0.566 4.566 15 N -0.140 5.140 16 C -0.160 4.160 17 N -0.131 5.131 18 C -0.087 4.087 19 C -0.166 4.166 20 O -0.351 6.351 21 Si 0.780 3.220 22 H -0.163 1.163 23 H -0.182 1.182 24 H -0.166 1.166 25 C -0.210 4.210 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.256 0.744 30 H 0.237 0.763 31 H 0.122 0.878 32 H 0.151 0.849 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.202 0.798 43 H 0.263 0.737 44 H 0.157 0.843 45 H 0.240 0.760 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 9.192 3.523 -0.500 9.857 hybrid contribution 0.203 -0.653 0.410 0.798 sum 9.395 2.870 -0.090 9.824 Atomic orbital electron populations 1.20343 0.89283 1.02874 1.02292 1.20232 0.96292 0.91342 1.01365 1.19808 0.84353 0.92302 1.20916 1.17150 0.85414 0.83372 0.76427 1.90724 1.17434 1.82978 1.51113 1.42427 1.10015 1.02312 1.72860 1.17740 0.92985 0.84506 1.17619 1.22522 0.99004 0.84523 1.05618 1.48291 1.02957 1.06348 1.54533 1.27408 1.04991 0.79326 1.23611 0.78270 0.64751 0.66632 0.62039 1.26509 1.19656 1.03150 1.08607 1.26138 1.06907 1.18054 1.05242 1.26223 1.12513 1.09246 1.08657 1.77407 0.98802 1.12601 1.25233 1.24333 0.98384 0.91564 1.01716 1.41947 1.06757 1.06655 1.57729 1.21194 0.98221 0.82534 1.06702 1.24704 1.00154 0.98569 0.93184 1.86549 1.96726 1.35727 1.16089 0.85550 0.76138 0.78450 0.81866 1.16330 1.18244 1.16643 1.20773 0.90973 0.99126 1.10164 0.91441 0.90577 0.91731 0.74413 0.76287 0.87826 0.84915 0.91858 0.91262 0.93518 0.89610 0.90725 0.90918 0.92142 0.90975 0.89251 0.79775 0.73673 0.84276 0.75991 0.82893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.54 9.84 71.24 0.70 0.16 16 2 C -0.08 -0.47 6.21 -19.56 -0.12 -0.59 16 3 C -0.06 -0.23 7.06 40.35 0.28 0.05 16 4 C 0.59 3.90 7.76 86.44 0.67 4.57 16 5 O -0.54 -7.37 11.94 -4.43 -0.05 -7.42 16 6 N -0.63 -0.48 5.47 -307.60 -1.68 -2.16 16 7 C -0.02 -0.11 6.90 37.63 0.26 0.15 16 8 C 0.03 -0.05 11.44 83.50 0.96 0.91 16 9 N -0.34 -0.61 3.01 -182.90 -0.55 -1.16 16 10 C -0.19 1.03 5.59 127.77 0.71 1.74 16 11 Si 1.09 -7.86 12.79 68.60 0.88 -6.98 16 12 C -0.48 -0.59 8.65 113.37 0.98 0.39 16 13 C -0.45 3.49 8.65 113.37 0.98 4.47 16 14 C -0.46 3.04 8.65 113.37 0.98 4.02 16 15 N -0.32 -3.24 12.57 -56.76 -0.71 -3.96 16 16 C 0.03 0.27 10.84 85.33 0.92 1.20 16 17 N -0.53 1.51 5.47 -171.93 -0.94 0.57 16 18 C 0.03 -0.06 6.12 41.34 0.25 0.19 16 19 C -0.06 0.31 2.98 71.24 0.21 0.53 16 20 O -0.54 1.90 12.87 -148.98 -1.92 -0.02 16 21 Si 0.96 -7.66 26.24 68.60 1.80 -5.86 16 22 H -0.24 2.18 7.11 99.48 0.71 2.89 16 23 H -0.26 0.96 7.11 99.48 0.71 1.67 16 24 H -0.24 2.02 7.11 99.48 0.71 2.72 16 25 C -0.19 -0.41 10.64 22.01 0.23 -0.18 16 26 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 28 H 0.06 0.62 6.47 -2.38 -0.02 0.61 16 29 H 0.42 -3.15 7.95 -92.71 -0.74 -3.88 16 30 H 0.22 -2.56 8.06 -2.91 -0.02 -2.58 16 31 H 0.10 -0.45 7.96 -2.39 -0.02 -0.47 16 32 H 0.13 -1.59 7.96 -2.38 -0.02 -1.61 16 33 H 0.06 0.14 7.96 -2.39 -0.02 0.12 16 34 H 0.07 0.03 7.96 -2.39 -0.02 0.01 16 35 H 0.05 0.30 7.96 -2.39 -0.02 0.28 16 36 H 0.08 -0.84 7.96 -2.39 -0.02 -0.86 16 37 H 0.07 -0.50 7.96 -2.39 -0.02 -0.52 16 38 H 0.07 -0.51 7.96 -2.39 -0.02 -0.52 16 39 H 0.06 -0.24 7.96 -2.39 -0.02 -0.26 16 40 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 41 H 0.09 -0.90 7.96 -2.39 -0.02 -0.92 16 42 H 0.19 2.63 5.91 -2.91 -0.02 2.62 16 43 H 0.42 -3.82 5.98 -92.71 -0.55 -4.37 16 44 H 0.14 -1.02 7.96 -2.39 -0.02 -1.04 16 45 H 0.39 -3.77 8.70 -74.06 -0.64 -4.41 16 46 H 0.15 0.12 8.06 -2.91 -0.02 0.09 16 Total: 0.00 -24.36 385.97 4.69 -19.67 By element: Atomic # 1 Polarization: -10.12 SS G_CDS: -0.16 Total: -10.28 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 8.03 Total: 17.62 kcal Atomic # 7 Polarization: -2.83 SS G_CDS: -3.89 Total: -6.72 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: -1.97 Total: -7.44 kcal Atomic # 14 Polarization: -15.52 SS G_CDS: 2.68 Total: -12.84 kcal Total: -24.36 4.69 -19.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_13940406.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.555 kcal (2) G-P(sol) polarization free energy of solvation -24.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds