Wall clock time and date at job start Sun Mar 7 2021 10:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86299 * 109.47120 * 2 1 4 4 C 1.86303 * 109.47027 * 240.00279 * 2 1 3 5 5 C 1.86300 * 109.47403 * 120.00156 * 2 1 3 6 6 N 1.46506 * 109.47174 * 60.00057 * 5 2 1 7 7 C 1.35808 * 126.04999 * 270.29740 * 6 5 2 8 8 C 1.35763 * 107.56302 * 180.13290 * 7 6 5 9 9 N 1.40763 * 126.08118 * 179.89609 * 8 7 6 10 10 C 1.34769 * 119.99572 * 179.71881 * 9 8 7 11 11 O 1.21303 * 120.00570 * 359.97438 * 10 9 8 12 12 C 1.50706 * 119.99849 * 180.02562 * 10 9 8 13 13 C 1.50698 * 109.47178 * 179.97438 * 12 10 9 14 14 C 1.34845 * 125.88977 * 275.02367 * 13 12 10 15 15 C 1.40899 * 107.41955 * 179.97438 * 14 13 12 16 16 C 1.34849 * 107.40982 * 359.73389 * 15 14 13 17 17 C 1.50708 * 125.88737 * 180.25597 * 16 15 14 18 18 O 1.42902 * 109.47043 * 120.20092 * 17 16 15 19 19 Si 1.86292 * 109.47087 * 0.20007 * 17 16 15 20 20 H 1.48502 * 109.47246 * 59.99990 * 19 17 16 21 21 H 1.48503 * 109.47216 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47267 * 299.99973 * 19 17 16 23 23 N 1.36341 * 108.22519 * 0.42861 * 16 15 14 24 24 C 1.40252 * 107.83364 * 359.63504 * 8 7 6 25 25 N 1.30827 * 108.34045 * 0.22571 * 24 8 7 26 26 H 1.09001 * 109.47042 * 299.99526 * 1 2 3 27 27 H 1.08995 * 109.47136 * 60.00188 * 1 2 3 28 28 H 1.09001 * 109.47076 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46820 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47300 * 300.00216 * 3 2 1 31 31 H 1.08997 * 109.47178 * 60.00580 * 3 2 1 32 32 H 1.09001 * 109.46882 * 299.99739 * 4 2 1 33 33 H 1.08995 * 109.47544 * 59.99783 * 4 2 1 34 34 H 1.08994 * 109.47571 * 180.02562 * 4 2 1 35 35 H 1.08994 * 109.46952 * 300.00345 * 5 2 1 36 36 H 1.09003 * 109.47090 * 179.97438 * 5 2 1 37 37 H 1.08000 * 126.22656 * 359.97438 * 7 6 5 38 38 H 0.96999 * 120.00121 * 359.71195 * 9 8 7 39 39 H 1.08999 * 109.46816 * 59.99449 * 12 10 9 40 40 H 1.09001 * 109.46873 * 299.99830 * 12 10 9 41 41 H 1.07997 * 126.29434 * 359.97438 * 14 13 12 42 42 H 1.07996 * 126.29224 * 179.97438 * 15 14 13 43 43 H 1.08997 * 109.46831 * 240.19961 * 17 16 15 44 44 H 0.96703 * 114.00238 * 300.00395 * 18 17 16 45 45 H 0.97001 * 125.64231 * 179.83591 * 23 16 15 46 46 H 1.08004 * 125.83029 * 180.22276 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4841 -0.8783 1.5211 6 7 1.9958 -2.2595 1.5211 7 6 0.8302 -2.6952 2.0652 8 6 0.7550 -4.0343 1.8544 9 7 -0.2941 -4.8799 2.2615 10 6 -0.2450 -6.1972 1.9813 11 8 0.7029 -6.6541 1.3778 12 6 -1.3685 -7.1025 2.4165 13 6 -1.0721 -8.5150 1.9830 14 6 -1.3463 -9.0448 0.7737 15 6 -0.9073 -10.3835 0.7902 16 6 -0.3762 -10.6190 2.0072 17 6 0.2244 -11.9206 2.4722 18 8 1.5911 -11.7122 2.8339 19 14 0.1302 -13.1742 1.0973 20 1 0.8834 -12.6743 -0.0808 21 1 0.7227 -14.4566 1.5553 22 1 -1.2900 -13.3908 0.7214 23 7 -0.4799 -9.4776 2.7457 24 6 1.9057 -4.4241 1.1537 25 7 2.6458 -3.3637 0.9552 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.5740 1.7564 -0.0005 30 1 2.1206 2.2703 -0.8900 31 1 2.1208 2.2702 0.8900 32 1 2.1207 -1.9058 -1.5212 33 1 2.1207 -0.3644 -2.4112 34 1 3.5739 -0.8786 -1.5211 35 1 2.1207 -0.3645 2.4110 36 1 3.5741 -0.8786 1.5208 37 1 0.0975 -2.0875 2.5753 38 1 -1.0522 -4.5145 2.7438 39 1 -2.3006 -6.7705 1.9593 40 1 -1.4635 -7.0675 3.5018 41 1 -1.8160 -8.5364 -0.0553 42 1 -0.9791 -11.0899 -0.0235 43 1 -0.3284 -12.2875 3.3369 44 1 2.1438 -11.3849 2.1111 45 1 -0.1783 -9.3673 3.6611 46 1 2.1408 -5.4282 0.8329 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_14644196.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:33:32 Heat of formation + Delta-G solvation = 16.705381 kcal Electronic energy + Delta-G solvation = -26132.931337 eV Core-core repulsion = 22376.752711 eV Total energy + Delta-G solvation = -3756.178626 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.153 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.43188 -42.14736 -40.29112 -37.70008 -35.81553 -33.81210 -33.01724 -31.91981 -30.56449 -29.56799 -29.17315 -28.38083 -28.32128 -26.88671 -25.18325 -23.05228 -22.14991 -21.37928 -21.31631 -20.81166 -19.00098 -18.36615 -17.87042 -17.12948 -16.67702 -16.54326 -16.30067 -16.08803 -15.50762 -15.13353 -15.08646 -14.83994 -14.24212 -14.22367 -14.16374 -14.13764 -14.05347 -13.92693 -13.82566 -13.79457 -13.51263 -13.39967 -13.21216 -13.13834 -13.02299 -12.77594 -12.25882 -12.10522 -12.02869 -11.78510 -11.73894 -11.33752 -10.89489 -10.84888 -10.80114 -10.61732 -10.01014 -9.78993 -8.95175 -8.57738 0.78118 1.04780 1.20169 1.36714 1.42343 1.53176 1.57200 1.68057 1.87278 1.88802 1.91477 2.09276 2.16577 2.37493 2.53927 2.58005 3.51633 3.67337 3.79743 3.84232 3.93410 4.11710 4.24511 4.30506 4.44690 4.53023 4.63728 4.64875 4.69175 4.70782 4.74832 4.75708 4.80502 4.83404 4.84518 4.87084 4.88796 5.17864 5.24606 5.28286 5.50947 5.60743 5.65778 5.81770 5.99101 6.11984 6.13109 6.52203 6.58235 6.70128 6.74395 7.28943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.457 4.457 2 Si 1.096 2.904 3 C -0.455 4.455 4 C -0.476 4.476 5 C -0.190 4.190 6 N -0.341 5.341 7 C 0.029 3.971 8 C -0.022 4.022 9 N -0.629 5.629 10 C 0.507 3.493 11 O -0.562 6.562 12 C -0.059 4.059 13 C 0.035 3.965 14 C -0.199 4.199 15 C -0.217 4.217 16 C -0.017 4.017 17 C -0.059 4.059 18 O -0.557 6.557 19 Si 1.012 2.988 20 H -0.264 1.264 21 H -0.269 1.269 22 H -0.255 1.255 23 N -0.532 5.532 24 C 0.020 3.980 25 N -0.322 5.322 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.132 0.868 36 H 0.100 0.900 37 H 0.221 0.779 38 H 0.430 0.570 39 H 0.148 0.852 40 H 0.135 0.865 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.128 0.872 44 H 0.388 0.612 45 H 0.421 0.579 46 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.306 6.716 4.720 10.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.565 4.565 2 Si 1.285 2.715 3 C -0.564 4.564 4 C -0.580 4.580 5 C -0.353 4.353 6 N -0.124 5.124 7 C -0.120 4.120 8 C -0.126 4.126 9 N -0.276 5.276 10 C 0.295 3.705 11 O -0.439 6.439 12 C -0.099 4.099 13 C -0.079 4.079 14 C -0.223 4.223 15 C -0.242 4.242 16 C -0.131 4.131 17 C -0.169 4.169 18 O -0.364 6.364 19 Si 0.835 3.165 20 H -0.189 1.189 21 H -0.194 1.194 22 H -0.179 1.179 23 N -0.127 5.127 24 C -0.165 4.165 25 N -0.147 5.147 26 H 0.108 0.892 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.150 0.850 36 H 0.119 0.881 37 H 0.237 0.763 38 H 0.269 0.731 39 H 0.166 0.834 40 H 0.153 0.847 41 H 0.157 0.843 42 H 0.156 0.844 43 H 0.146 0.854 44 H 0.237 0.763 45 H 0.260 0.740 46 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -4.705 6.092 3.906 8.632 hybrid contribution -0.303 0.020 0.366 0.476 sum -5.008 6.112 4.272 8.983 Atomic orbital electron populations 1.26204 1.20390 1.04315 1.05591 0.78243 0.66457 0.64722 0.62100 1.26144 1.06635 1.18030 1.05560 1.26523 1.06087 1.07495 1.17853 1.27389 1.06880 0.80797 1.20251 1.48266 1.14930 1.07186 1.41984 1.22557 0.92664 0.93623 1.03129 1.17815 0.93856 0.90659 1.10295 1.42659 1.21700 1.06342 1.56914 1.21176 0.88254 0.82207 0.78865 1.90654 1.36242 1.75571 1.41441 1.20194 0.97910 0.86445 1.05381 1.19859 1.04059 0.91282 0.92701 1.20812 1.08737 0.95322 0.97461 1.20874 1.07953 0.98142 0.97201 1.20965 1.08387 0.90486 0.93218 1.24808 0.83842 0.97273 1.10998 1.86445 1.18763 1.88947 1.42245 0.84773 0.80678 0.75831 0.75249 1.18861 1.19418 1.17925 1.41842 1.47000 1.09429 1.14464 1.24275 0.93375 0.98574 1.00279 1.77379 1.22036 0.93428 1.21841 0.89223 0.90987 0.92038 0.91017 0.90728 0.89587 0.93607 0.91255 0.92010 0.84978 0.88110 0.76266 0.73111 0.83441 0.84736 0.84339 0.84437 0.85434 0.76263 0.74038 0.80379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 3.04 8.65 113.37 0.98 4.02 16 2 Si 1.10 -7.63 12.78 68.60 0.88 -6.75 16 3 C -0.46 3.38 8.65 113.37 0.98 4.36 16 4 C -0.48 -0.79 8.65 113.37 0.98 0.19 16 5 C -0.19 0.95 5.59 127.77 0.71 1.66 16 6 N -0.34 -0.71 3.02 -182.92 -0.55 -1.26 16 7 C 0.03 -0.05 11.43 83.50 0.95 0.90 16 8 C -0.02 -0.07 6.90 37.62 0.26 0.19 16 9 N -0.63 1.75 5.47 -304.04 -1.66 0.09 16 10 C 0.51 0.83 7.79 87.66 0.68 1.51 16 11 O -0.56 -6.73 13.19 -3.10 -0.04 -6.78 16 12 C -0.06 0.33 6.24 29.10 0.18 0.51 16 13 C 0.04 0.08 5.66 41.08 0.23 0.31 16 14 C -0.20 -1.19 10.76 22.14 0.24 -0.95 16 15 C -0.22 -1.39 9.37 22.14 0.21 -1.18 16 16 C -0.02 -0.07 6.50 41.08 0.27 0.20 16 17 C -0.06 -0.07 3.08 71.24 0.22 0.15 16 18 O -0.56 -1.70 12.88 -148.98 -1.92 -3.62 16 19 Si 1.01 1.13 25.87 68.60 1.77 2.90 16 20 H -0.26 -0.88 7.11 99.48 0.71 -0.17 16 21 H -0.27 -0.86 7.11 99.48 0.71 -0.16 16 22 H -0.26 -0.50 7.11 99.48 0.71 0.20 16 23 N -0.53 -1.19 6.08 -171.12 -1.04 -2.23 16 24 C 0.02 0.22 10.84 85.33 0.92 1.15 16 25 N -0.32 -3.50 12.56 -56.77 -0.71 -4.22 16 26 H 0.09 -0.90 7.96 -2.39 -0.02 -0.92 16 27 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 28 H 0.06 -0.25 7.96 -2.39 -0.02 -0.27 16 29 H 0.07 -0.47 7.96 -2.39 -0.02 -0.49 16 30 H 0.07 -0.48 7.96 -2.39 -0.02 -0.50 16 31 H 0.09 -0.83 7.96 -2.39 -0.02 -0.85 16 32 H 0.04 0.31 7.96 -2.39 -0.02 0.29 16 33 H 0.07 0.06 7.96 -2.39 -0.02 0.04 16 34 H 0.06 0.18 7.96 -2.39 -0.02 0.16 16 35 H 0.13 -1.53 7.96 -2.39 -0.02 -1.55 16 36 H 0.10 -0.37 7.96 -2.39 -0.02 -0.39 16 37 H 0.22 -2.62 8.06 -2.91 -0.02 -2.64 16 38 H 0.43 -5.10 8.83 -92.71 -0.82 -5.92 16 39 H 0.15 -1.64 8.14 -2.39 -0.02 -1.66 16 40 H 0.13 -1.61 8.14 -2.39 -0.02 -1.63 16 41 H 0.14 0.57 8.06 -2.91 -0.02 0.55 16 42 H 0.14 0.63 6.22 -2.91 -0.02 0.62 16 43 H 0.13 -0.24 7.96 -2.39 -0.02 -0.26 16 44 H 0.39 -0.43 8.70 -74.05 -0.64 -1.07 16 45 H 0.42 -0.70 8.96 -92.71 -0.83 -1.53 16 46 H 0.18 2.74 5.92 -2.91 -0.02 2.73 16 Total: 0.00 -28.74 389.89 4.03 -24.71 By element: Atomic # 1 Polarization: -15.34 SS G_CDS: -0.52 Total: -15.87 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 7.83 Total: 13.02 kcal Atomic # 7 Polarization: -3.66 SS G_CDS: -3.97 Total: -7.63 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -1.96 Total: -10.39 kcal Atomic # 14 Polarization: -6.50 SS G_CDS: 2.65 Total: -3.85 kcal Total: -28.74 4.03 -24.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_14644196.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.418 kcal (2) G-P(sol) polarization free energy of solvation -28.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds