Wall clock time and date at job start Sun Mar 7 2021 10:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86298 * 109.47241 * 2 1 4 4 C 1.86293 * 109.47129 * 239.99809 * 2 1 3 5 5 C 1.86302 * 109.46711 * 120.00042 * 2 1 3 6 6 N 1.46496 * 109.47292 * 60.00210 * 5 2 1 7 7 C 1.35814 * 126.05647 * 89.99934 * 6 5 2 8 8 C 1.35746 * 107.56158 * 180.02562 * 7 6 5 9 9 N 1.40771 * 126.07907 * 179.97438 * 8 7 6 10 10 C 1.34774 * 119.99937 * 179.97438 * 9 8 7 11 11 O 1.21302 * 120.00470 * 359.97438 * 10 9 8 12 12 C 1.50705 * 119.99676 * 180.02562 * 10 9 8 13 13 C 1.53546 * 109.82427 * 80.00077 * 12 10 9 14 14 C 1.53032 * 108.56341 * 180.48764 * 13 12 10 15 15 C 1.50208 * 110.18023 * 310.51166 * 14 13 12 16 16 C 1.50693 * 118.54770 * 199.94294 * 15 14 13 17 17 O 1.42898 * 109.47235 * 70.00389 * 16 15 14 18 18 Si 1.86305 * 109.46954 * 190.00173 * 16 15 14 19 19 H 1.48496 * 109.47097 * 60.00097 * 18 16 15 20 20 H 1.48505 * 109.47127 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47209 * 299.99837 * 18 16 15 22 22 C 1.30767 * 123.15991 * 19.96997 * 15 14 13 23 23 N 1.38931 * 121.74983 * 359.66104 * 22 15 14 24 24 C 1.40253 * 107.84399 * 0.25937 * 8 7 6 25 25 N 1.30825 * 108.33267 * 359.55569 * 24 8 7 26 26 H 1.08998 * 109.47349 * 300.00187 * 1 2 3 27 27 H 1.08998 * 109.46946 * 60.00078 * 1 2 3 28 28 H 1.08997 * 109.47307 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47281 * 179.97438 * 3 2 1 30 30 H 1.09007 * 109.47062 * 300.00127 * 3 2 1 31 31 H 1.08998 * 109.47102 * 59.99661 * 3 2 1 32 32 H 1.09008 * 109.47470 * 299.99954 * 4 2 1 33 33 H 1.09004 * 109.47489 * 60.00476 * 4 2 1 34 34 H 1.09007 * 109.47237 * 180.02562 * 4 2 1 35 35 H 1.09003 * 109.46921 * 299.99504 * 5 2 1 36 36 H 1.08999 * 109.46779 * 180.02562 * 5 2 1 37 37 H 1.08000 * 126.21490 * 359.97438 * 7 6 5 38 38 H 0.97001 * 119.99517 * 0.02562 * 9 8 7 39 39 H 1.08994 * 109.86546 * 319.10413 * 12 10 9 40 40 H 1.09001 * 109.61905 * 60.76131 * 13 12 10 41 41 H 1.09003 * 109.61797 * 300.21244 * 13 12 10 42 42 H 1.09002 * 109.32995 * 70.68866 * 14 13 12 43 43 H 1.08996 * 109.33232 * 190.34132 * 14 13 12 44 44 H 1.08996 * 109.47512 * 310.00284 * 16 15 14 45 45 H 0.96699 * 114.00039 * 59.99281 * 17 16 15 46 46 H 1.07996 * 119.17862 * 179.63029 * 22 15 14 47 47 H 0.97003 * 120.55768 * 193.25190 * 23 22 15 48 48 H 1.08003 * 125.83325 * 179.73362 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5210 5 6 2.4839 -0.8783 1.5212 6 7 1.9956 -2.2594 1.5212 7 6 2.6257 -3.3301 0.9722 8 6 1.8447 -4.4194 1.1870 9 7 2.1283 -5.7363 0.7784 10 6 1.2621 -6.7301 1.0586 11 8 0.2383 -6.4899 1.6632 12 6 1.5660 -8.1400 0.6216 13 6 2.5570 -8.7863 1.6004 14 6 2.8543 -10.2098 1.1237 15 6 1.5725 -10.9386 0.8369 16 6 1.5931 -12.4449 0.8010 17 8 1.7923 -12.9503 2.1227 18 14 -0.0294 -13.0724 0.1342 19 1 -0.2364 -12.5472 -1.2393 20 1 -0.0094 -14.5569 0.0993 21 1 -1.1359 -12.6133 1.0117 22 6 0.4370 -10.3288 0.6160 23 7 0.3348 -8.9434 0.6382 24 6 0.7019 -3.9985 1.8826 25 7 0.7959 -2.7097 2.0869 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.5740 1.7564 0.0005 30 1 2.1207 2.2703 -0.8900 31 1 2.1207 2.2703 0.8899 32 1 2.1207 -1.9060 -1.5211 33 1 2.1208 -0.3644 -2.4111 34 1 3.5741 -0.8787 -1.5208 35 1 2.1206 -0.3643 2.4111 36 1 3.5739 -0.8779 1.5214 37 1 3.5751 -3.3169 0.4576 38 1 2.9475 -5.9286 0.2958 39 1 1.9896 -8.1334 -0.3826 40 1 2.1182 -8.8183 2.5976 41 1 3.4802 -8.2072 1.6222 42 1 3.4564 -10.1679 0.2160 43 1 3.4062 -10.7419 1.8984 44 1 2.4053 -12.7819 0.1569 45 1 1.1054 -12.6892 2.7513 46 1 -0.4451 -10.9169 0.4102 47 1 -0.5344 -8.5134 0.6637 48 1 -0.1148 -4.6308 2.1983 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_15413834.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:33:44 Heat of formation + Delta-G solvation = -3.326808 kcal Electronic energy + Delta-G solvation = -27001.367856 eV Core-core repulsion = 23217.009091 eV Total energy + Delta-G solvation = -3784.358766 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.38421 -41.14694 -39.48795 -37.34729 -35.97034 -33.80229 -33.15497 -32.95320 -30.46097 -29.52940 -28.38328 -28.34858 -27.78820 -26.60115 -25.38277 -23.80804 -22.84532 -22.09801 -21.13356 -19.29968 -19.18526 -18.34733 -17.92128 -17.08586 -16.72682 -16.53863 -16.26840 -15.89137 -15.72612 -15.30793 -15.28649 -14.99685 -14.77522 -14.24797 -14.17987 -14.15541 -14.03885 -13.89338 -13.83445 -13.80104 -13.42208 -13.21605 -13.14337 -13.12635 -13.02542 -12.86772 -12.26207 -12.18806 -12.12561 -11.84472 -11.76313 -11.60425 -11.37903 -11.19723 -10.85850 -10.85178 -10.80247 -10.12487 -10.03429 -8.63991 -8.44180 0.73367 1.22305 1.28753 1.34474 1.41142 1.47716 1.53518 1.66835 1.86958 1.91400 1.95925 2.05300 2.16756 2.57540 2.64599 3.52102 3.74724 3.76690 3.78734 3.86389 3.99971 4.09178 4.27268 4.35727 4.48700 4.58020 4.65513 4.68348 4.70260 4.72942 4.73597 4.74820 4.83010 4.84088 4.86853 4.87013 4.88556 5.08035 5.12157 5.27480 5.33955 5.50672 5.60458 5.62531 5.65567 5.76044 6.08175 6.25669 6.44464 6.68690 6.80096 6.86866 7.11608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.476 4.476 2 Si 1.097 2.903 3 C -0.456 4.456 4 C -0.458 4.458 5 C -0.190 4.190 6 N -0.340 5.340 7 C 0.034 3.966 8 C -0.025 4.025 9 N -0.621 5.621 10 C 0.510 3.490 11 O -0.560 6.560 12 C 0.146 3.854 13 C -0.121 4.121 14 C -0.052 4.052 15 C -0.281 4.281 16 C -0.054 4.054 17 O -0.561 6.561 18 Si 0.968 3.032 19 H -0.259 1.259 20 H -0.283 1.283 21 H -0.260 1.260 22 C 0.124 3.876 23 N -0.740 5.740 24 C 0.022 3.978 25 N -0.320 5.320 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.133 0.867 37 H 0.222 0.778 38 H 0.430 0.570 39 H 0.119 0.881 40 H 0.054 0.946 41 H 0.102 0.898 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.115 0.885 45 H 0.384 0.616 46 H 0.130 0.870 47 H 0.405 0.595 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.348 3.377 -4.763 9.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.580 4.580 2 Si 1.286 2.714 3 C -0.564 4.564 4 C -0.566 4.566 5 C -0.354 4.354 6 N -0.122 5.122 7 C -0.115 4.115 8 C -0.129 4.129 9 N -0.268 5.268 10 C 0.297 3.703 11 O -0.438 6.438 12 C 0.037 3.963 13 C -0.160 4.160 14 C -0.089 4.089 15 C -0.291 4.291 16 C -0.166 4.166 17 O -0.367 6.367 18 Si 0.796 3.204 19 H -0.183 1.183 20 H -0.209 1.209 21 H -0.185 1.185 22 C 0.003 3.997 23 N -0.373 5.373 24 C -0.163 4.163 25 N -0.145 5.145 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.151 0.849 37 H 0.238 0.762 38 H 0.269 0.731 39 H 0.136 0.864 40 H 0.073 0.927 41 H 0.121 0.879 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.133 0.867 45 H 0.232 0.768 46 H 0.147 0.853 47 H 0.242 0.758 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 5.966 4.147 -4.400 8.495 hybrid contribution -0.437 -0.439 0.216 0.656 sum 5.529 3.708 -4.184 7.863 Atomic orbital electron populations 1.26520 1.24506 1.03008 1.03924 0.78222 0.63893 0.65785 0.63508 1.26154 1.07335 1.17985 1.04975 1.26216 1.07464 1.07668 1.15218 1.27398 1.06665 0.81813 1.19478 1.48282 1.14661 1.07715 1.41564 1.22569 1.00817 0.85153 1.02967 1.17775 0.98284 0.86082 1.10806 1.42530 1.24334 1.03557 1.56331 1.20990 0.82977 0.87405 0.78930 1.90620 1.27814 1.83850 1.41532 1.21048 0.87651 0.85907 1.01726 1.21862 0.98913 0.97575 0.97671 1.19976 0.94529 0.92657 1.01785 1.20956 0.96453 0.95780 1.15932 1.24625 1.11310 0.92305 0.88365 1.86453 1.53947 1.76091 1.20234 0.85467 0.76640 0.78519 0.79789 1.18297 1.20907 1.18510 1.20442 0.97925 0.84061 0.97258 1.44351 1.07344 1.03065 1.82539 1.24289 0.99782 0.92036 1.00210 1.77393 1.03302 1.12535 1.21243 0.91970 0.91293 0.93526 0.89609 0.90760 0.91008 0.92027 0.91023 0.89229 0.88009 0.84914 0.76183 0.73064 0.86398 0.92689 0.87919 0.89892 0.90755 0.86740 0.76797 0.85290 0.75843 0.80124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 -0.40 8.65 113.37 0.98 0.58 16 2 Si 1.10 -8.39 12.79 68.60 0.88 -7.52 16 3 C -0.46 3.59 8.65 113.37 0.98 4.58 16 4 C -0.46 3.31 8.65 113.37 0.98 4.29 16 5 C -0.19 1.11 5.59 127.77 0.71 1.83 16 6 N -0.34 -0.36 3.01 -182.94 -0.55 -0.91 16 7 C 0.03 -0.09 11.44 83.50 0.96 0.86 16 8 C -0.02 -0.06 6.90 37.62 0.26 0.20 16 9 N -0.62 1.82 5.47 -304.05 -1.66 0.16 16 10 C 0.51 0.83 7.07 87.66 0.62 1.45 16 11 O -0.56 -5.66 13.22 -3.10 -0.04 -5.70 16 12 C 0.15 -0.40 3.36 44.33 0.15 -0.25 16 13 C -0.12 0.42 5.47 30.79 0.17 0.59 16 14 C -0.05 0.15 5.86 29.70 0.17 0.32 16 15 C -0.28 0.15 5.36 -16.41 -0.09 0.06 16 16 C -0.05 0.03 2.81 71.23 0.20 0.23 16 17 O -0.56 -1.05 12.88 -148.98 -1.92 -2.97 16 18 Si 0.97 0.01 25.19 68.60 1.73 1.73 16 19 H -0.26 -0.23 7.11 99.48 0.71 0.48 16 20 H -0.28 -1.21 7.11 99.48 0.71 -0.50 16 21 H -0.26 -0.14 6.87 99.48 0.68 0.55 16 22 C 0.12 0.03 9.60 83.77 0.80 0.83 16 23 N -0.74 -0.51 5.47 -329.26 -1.80 -2.31 16 24 C 0.02 0.21 10.84 85.33 0.92 1.14 16 25 N -0.32 -3.07 12.56 -56.77 -0.71 -3.78 16 26 H 0.06 0.13 7.96 -2.39 -0.02 0.11 16 27 H 0.07 0.01 7.96 -2.39 -0.02 -0.01 16 28 H 0.05 0.27 7.96 -2.39 -0.02 0.25 16 29 H 0.08 -0.86 7.96 -2.39 -0.02 -0.88 16 30 H 0.07 -0.51 7.96 -2.38 -0.02 -0.53 16 31 H 0.07 -0.51 7.96 -2.39 -0.02 -0.53 16 32 H 0.06 -0.30 7.96 -2.38 -0.02 -0.31 16 33 H 0.07 -0.43 7.96 -2.39 -0.02 -0.45 16 34 H 0.09 -0.95 7.96 -2.38 -0.02 -0.96 16 35 H 0.10 -0.47 7.96 -2.39 -0.02 -0.49 16 36 H 0.13 -1.64 7.96 -2.39 -0.02 -1.66 16 37 H 0.22 -2.81 8.06 -2.91 -0.02 -2.83 16 38 H 0.43 -4.90 8.83 -92.71 -0.82 -5.72 16 39 H 0.12 -0.91 8.14 -2.39 -0.02 -0.93 16 40 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 41 H 0.10 -0.85 8.14 -2.39 -0.02 -0.87 16 42 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16 43 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 44 H 0.11 -0.24 7.96 -2.39 -0.02 -0.26 16 45 H 0.38 -1.38 8.70 -74.06 -0.64 -2.03 16 46 H 0.13 -0.15 4.29 -2.91 -0.01 -0.16 16 47 H 0.41 0.84 8.08 -92.71 -0.75 0.09 16 48 H 0.18 2.39 5.92 -2.91 -0.02 2.38 16 Total: 0.00 -23.62 392.08 3.25 -20.37 By element: Atomic # 1 Polarization: -15.28 SS G_CDS: -0.49 Total: -15.77 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: 7.82 Total: 16.70 kcal Atomic # 7 Polarization: -2.12 SS G_CDS: -4.73 Total: -6.85 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -1.96 Total: -8.67 kcal Atomic # 14 Polarization: -8.39 SS G_CDS: 2.61 Total: -5.78 kcal Total: -23.62 3.25 -20.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_15413834.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.042 kcal (2) G-P(sol) polarization free energy of solvation -23.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds