Wall clock time and date at job start Sun Mar 7 2021 10:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86303 * 109.47060 * 2 1 4 4 C 1.86295 * 109.47216 * 240.00220 * 2 1 3 5 5 C 1.86302 * 109.47095 * 119.99656 * 2 1 3 6 6 N 1.46498 * 109.46863 * 60.00510 * 5 2 1 7 7 C 1.35809 * 126.05611 * 89.99699 * 6 5 2 8 8 C 1.35758 * 107.56183 * 180.02562 * 7 6 5 9 9 N 1.40770 * 126.07980 * 180.02562 * 8 7 6 10 10 C 1.34769 * 119.99866 * 179.97438 * 9 8 7 11 11 O 1.21312 * 120.00325 * 359.97438 * 10 9 8 12 12 C 1.50697 * 119.99924 * 179.97438 * 10 9 8 13 13 C 1.53038 * 109.33086 * 216.04817 * 12 10 9 14 14 C 1.53543 * 108.56361 * 190.16819 * 13 12 10 15 15 N 1.47031 * 107.65739 * 60.95229 * 14 13 12 16 16 C 1.38926 * 118.88354 * 316.33366 * 15 14 13 17 17 C 1.31122 * 121.84526 * 13.31797 * 16 15 14 18 18 C 1.50696 * 118.54376 * 179.56767 * 17 16 15 19 19 O 1.42894 * 109.47410 * 258.37429 * 18 17 16 20 20 Si 1.86301 * 109.47148 * 18.37722 * 18 17 16 21 21 H 1.48503 * 109.47339 * 59.99748 * 20 18 17 22 22 H 1.48506 * 109.46963 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47146 * 299.99222 * 20 18 17 24 24 C 1.40249 * 107.83887 * 0.26203 * 8 7 6 25 25 N 1.30827 * 108.33720 * 359.55699 * 24 8 7 26 26 H 1.09008 * 109.46673 * 300.00248 * 1 2 3 27 27 H 1.08998 * 109.47310 * 59.99642 * 1 2 3 28 28 H 1.08996 * 109.47415 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47143 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.46962 * 299.99922 * 3 2 1 31 31 H 1.08996 * 109.47604 * 59.99960 * 3 2 1 32 32 H 1.09002 * 109.46955 * 299.99920 * 4 2 1 33 33 H 1.08996 * 109.47329 * 59.99258 * 4 2 1 34 34 H 1.08998 * 109.47353 * 180.02562 * 4 2 1 35 35 H 1.08996 * 109.47143 * 299.99779 * 5 2 1 36 36 H 1.09002 * 109.46657 * 179.97438 * 5 2 1 37 37 H 1.08000 * 126.22130 * 359.97438 * 7 6 5 38 38 H 0.96997 * 119.99743 * 359.97438 * 9 8 7 39 39 H 1.08994 * 109.19217 * 335.61965 * 12 10 9 40 40 H 1.09000 * 109.62490 * 70.44868 * 13 12 10 41 41 H 1.09008 * 109.62451 * 309.89013 * 13 12 10 42 42 H 1.08999 * 109.82574 * 301.41077 * 14 13 12 43 43 H 1.09006 * 109.82287 * 180.48994 * 14 13 12 44 44 H 0.96995 * 120.56139 * 136.31585 * 15 14 13 45 45 H 1.07997 * 119.07787 * 193.33996 * 16 15 14 46 46 H 1.09001 * 109.46685 * 138.37205 * 18 17 16 47 47 H 0.96700 * 114.00443 * 60.00047 * 19 18 17 48 48 H 1.08006 * 125.83255 * 179.73723 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8781 -1.5211 5 6 2.4840 -0.8781 1.5212 6 7 1.9957 -2.2594 1.5212 7 6 2.6258 -3.3299 0.9722 8 6 1.8448 -4.4194 1.1870 9 7 2.1289 -5.7364 0.7792 10 6 1.2627 -6.7302 1.0593 11 8 0.2384 -6.4898 1.6632 12 6 1.5666 -8.1400 0.6223 13 6 0.2656 -8.8357 0.2152 14 6 0.5516 -10.3316 0.0201 15 7 1.0269 -10.8660 1.3047 16 6 1.9534 -10.1325 2.0351 17 6 2.2222 -8.8805 1.7527 18 6 3.2333 -8.1523 2.6002 19 8 2.5543 -7.3081 3.5320 20 14 4.2735 -9.3895 3.5267 21 1 4.9792 -10.2667 2.5583 22 1 5.2702 -8.6718 4.3614 23 1 3.4005 -10.2160 4.3985 24 6 0.7021 -3.9984 1.8826 25 7 0.7960 -2.7096 2.0868 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.5740 1.7565 -0.0005 30 1 2.1206 2.2703 -0.8901 31 1 2.1207 2.2704 0.8899 32 1 2.1207 -1.9058 -1.5211 33 1 2.1206 -0.3644 -2.4111 34 1 3.5740 -0.8786 -1.5209 35 1 2.1207 -0.3643 2.4111 36 1 3.5740 -0.8785 1.5209 37 1 3.5752 -3.3168 0.4575 38 1 2.9481 -5.9287 0.2967 39 1 2.2434 -8.1125 -0.2315 40 1 -0.1014 -8.4085 -0.7181 41 1 -0.4804 -8.7048 0.9992 42 1 1.3190 -10.4649 -0.7424 43 1 -0.3614 -10.8464 -0.2794 44 1 0.6990 -11.7163 1.6368 45 1 2.4670 -10.6067 2.8583 46 1 3.8741 -7.5456 1.9603 47 1 1.9649 -7.7817 4.1349 48 1 -0.1146 -4.6307 2.1984 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608520_15608500.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:33:57 Heat of formation + Delta-G solvation = -2.965092 kcal Electronic energy + Delta-G solvation = -28110.076256 eV Core-core repulsion = 24325.733175 eV Total energy + Delta-G solvation = -3784.343080 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.07144 -41.02441 -39.08797 -37.40680 -35.50341 -33.75288 -33.14337 -32.74593 -30.18270 -29.61581 -28.51598 -28.37601 -27.50454 -26.66894 -25.72518 -23.25623 -22.64497 -21.88986 -20.82077 -19.28284 -19.05377 -18.10234 -17.73430 -17.30879 -16.57525 -16.48221 -16.19560 -15.73554 -15.65172 -15.11174 -14.89529 -14.83456 -14.48988 -14.40944 -14.26579 -14.23346 -14.02836 -13.86891 -13.77553 -13.62131 -13.38773 -13.34951 -13.25514 -13.17200 -13.09720 -12.72084 -12.31803 -12.07617 -11.95880 -11.77899 -11.58769 -11.44617 -11.41941 -11.10706 -10.96790 -10.85936 -10.40678 -10.12728 -9.80645 -8.51426 -8.30297 0.95487 1.20945 1.24253 1.40943 1.45796 1.52155 1.59746 1.75603 1.83545 1.93927 2.00641 2.46387 2.49813 2.52200 2.55547 3.60782 3.72773 3.75620 3.85996 3.94385 4.08276 4.14940 4.30836 4.35567 4.49048 4.52935 4.59274 4.61438 4.62357 4.64514 4.68077 4.69930 4.70520 4.74231 4.83722 4.87156 4.94461 4.98049 5.16071 5.28286 5.38442 5.40883 5.46207 5.49371 5.64202 6.16582 6.24157 6.28171 6.69829 6.74783 6.80062 7.05222 7.53105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.445 4.445 2 Si 1.017 2.983 3 C -0.450 4.450 4 C -0.449 4.449 5 C -0.166 4.166 6 N -0.347 5.347 7 C 0.005 3.995 8 C 0.010 3.990 9 N -0.641 5.641 10 C 0.540 3.460 11 O -0.524 6.524 12 C -0.032 4.032 13 C -0.126 4.126 14 C 0.122 3.878 15 N -0.748 5.748 16 C 0.144 3.856 17 C -0.276 4.276 18 C -0.061 4.061 19 O -0.534 6.534 20 Si 0.944 3.056 21 H -0.252 1.252 22 H -0.256 1.256 23 H -0.256 1.256 24 C 0.050 3.950 25 N -0.286 5.286 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.172 0.828 38 H 0.405 0.595 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.062 0.938 43 H 0.083 0.917 44 H 0.403 0.597 45 H 0.130 0.870 46 H 0.103 0.897 47 H 0.373 0.627 48 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.739 -2.489 -4.016 6.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.554 4.554 2 Si 1.212 2.788 3 C -0.558 4.558 4 C -0.557 4.557 5 C -0.332 4.332 6 N -0.130 5.130 7 C -0.143 4.143 8 C -0.094 4.094 9 N -0.285 5.285 10 C 0.327 3.673 11 O -0.399 6.399 12 C -0.054 4.054 13 C -0.165 4.165 14 C -0.003 4.003 15 N -0.378 5.378 16 C 0.022 3.978 17 C -0.287 4.287 18 C -0.173 4.173 19 O -0.339 6.339 20 Si 0.768 3.232 21 H -0.176 1.176 22 H -0.181 1.181 23 H -0.181 1.181 24 C -0.137 4.137 25 N -0.109 5.109 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.189 0.811 38 H 0.239 0.761 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.080 0.920 43 H 0.101 0.899 44 H 0.237 0.763 45 H 0.147 0.853 46 H 0.121 0.879 47 H 0.219 0.781 48 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 3.336 -1.306 -3.033 4.694 hybrid contribution 0.428 -1.339 -0.336 1.445 sum 3.765 -2.645 -3.369 5.703 Atomic orbital electron populations 1.26061 1.20069 1.04919 1.04304 0.79400 0.68137 0.66297 0.65003 1.26101 1.06349 1.18333 1.05012 1.26115 1.06084 1.08328 1.15144 1.26886 1.04273 0.83559 1.18517 1.47881 1.15796 1.06204 1.43152 1.21799 1.00232 0.86707 1.05552 1.17634 0.98041 0.84858 1.08887 1.42807 1.23834 1.04692 1.57175 1.20268 0.82730 0.85885 0.78425 1.90551 1.26423 1.83209 1.39704 1.19588 0.97812 0.90955 0.97017 1.21820 0.96674 0.94894 1.03119 1.21611 0.99421 0.93881 0.85394 1.44551 1.46877 1.24194 1.22200 1.20536 0.90827 0.91712 0.94763 1.20462 1.08738 0.94213 1.05273 1.24632 0.97897 1.00721 0.94047 1.86567 1.62673 1.36132 1.48510 0.85833 0.79362 0.77767 0.80220 1.17580 1.18060 1.18078 1.24410 0.99075 0.91577 0.98604 1.77419 1.01298 1.12489 1.19714 0.91074 0.91326 0.90953 0.91011 0.90650 0.90891 0.91067 0.90848 0.91167 0.87903 0.88529 0.81091 0.76063 0.89592 0.90381 0.89431 0.91971 0.89891 0.76279 0.85293 0.87870 0.78069 0.78115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 -0.23 8.65 101.05 0.87 0.64 16 2 Si 1.02 -2.28 12.79 -169.99 -2.17 -4.46 16 3 C -0.45 1.00 8.65 101.05 0.87 1.87 16 4 C -0.45 0.73 8.65 101.05 0.87 1.60 16 5 C -0.17 0.13 5.59 59.85 0.33 0.47 16 6 N -0.35 -0.82 3.01 -9.17 -0.03 -0.85 16 7 C 0.00 0.01 11.44 -16.68 -0.19 -0.18 16 8 C 0.01 0.03 6.90 -83.88 -0.58 -0.55 16 9 N -0.64 -0.67 5.47 -10.04 -0.05 -0.72 16 10 C 0.54 1.28 4.94 -10.99 -0.05 1.23 16 11 O -0.52 -3.02 13.25 5.53 0.07 -2.95 16 12 C -0.03 0.00 2.69 -93.15 -0.25 -0.25 16 13 C -0.13 0.05 5.31 -26.43 -0.14 -0.09 16 14 C 0.12 -0.27 7.16 -3.47 -0.02 -0.29 16 15 N -0.75 1.29 5.83 -60.68 -0.35 0.94 16 16 C 0.14 -0.11 9.61 -16.08 -0.15 -0.27 16 17 C -0.28 0.05 5.00 -101.34 -0.51 -0.45 16 18 C -0.06 0.01 2.21 36.00 0.08 0.09 16 19 O -0.53 -1.04 11.72 -35.23 -0.41 -1.45 16 20 Si 0.94 -0.57 25.53 -169.99 -4.34 -4.91 16 21 H -0.25 0.05 7.11 56.52 0.40 0.45 16 22 H -0.26 -0.35 7.11 56.52 0.40 0.05 16 23 H -0.26 0.15 6.61 56.52 0.37 0.53 16 24 C 0.05 0.28 10.84 -17.22 -0.19 0.09 16 25 N -0.29 -1.56 12.56 30.70 0.39 -1.18 16 26 H 0.07 0.06 7.96 -51.92 -0.41 -0.36 16 27 H 0.07 0.00 7.96 -51.93 -0.41 -0.41 16 28 H 0.07 0.18 7.96 -51.93 -0.41 -0.23 16 29 H 0.07 -0.19 7.96 -51.93 -0.41 -0.61 16 30 H 0.07 -0.15 7.96 -51.92 -0.41 -0.56 16 31 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 32 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 33 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 34 H 0.07 -0.17 7.96 -51.93 -0.41 -0.59 16 35 H 0.10 -0.07 7.96 -51.93 -0.41 -0.48 16 36 H 0.10 -0.28 7.96 -51.93 -0.41 -0.69 16 37 H 0.17 -0.38 8.06 -52.49 -0.42 -0.80 16 38 H 0.40 -0.86 8.79 -40.82 -0.36 -1.22 16 39 H 0.09 -0.19 8.09 -51.93 -0.42 -0.61 16 40 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 41 H 0.09 0.17 7.51 -51.92 -0.39 -0.22 16 42 H 0.06 -0.16 8.14 -51.93 -0.42 -0.59 16 43 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16 44 H 0.40 -1.37 8.96 -40.82 -0.37 -1.74 16 45 H 0.13 -0.23 4.43 -52.49 -0.23 -0.47 16 46 H 0.10 -0.12 7.96 -51.93 -0.41 -0.53 16 47 H 0.37 -0.06 8.70 45.56 0.40 0.34 16 48 H 0.20 1.31 5.92 -52.48 -0.31 1.00 16 LS Contribution 389.08 15.07 5.86 5.86 Total: 0.00 -9.03 389.08 -7.25 -16.28 By element: Atomic # 1 Polarization: -3.33 SS G_CDS: -7.16 Total: -10.49 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 0.95 Total: 3.92 kcal Atomic # 7 Polarization: -1.76 SS G_CDS: -0.05 Total: -1.81 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -0.34 Total: -4.40 kcal Atomic # 14 Polarization: -2.85 SS G_CDS: -6.51 Total: -9.37 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -9.03 -7.25 -16.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_15608500.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.319 kcal (2) G-P(sol) polarization free energy of solvation -9.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds