Wall clock time and date at job start Sun Mar 7 2021 10:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86303 * 109.47060 * 2 1 4 4 C 1.86295 * 109.47216 * 240.00220 * 2 1 3 5 5 C 1.86302 * 109.47095 * 119.99656 * 2 1 3 6 6 N 1.46498 * 109.46863 * 60.00510 * 5 2 1 7 7 C 1.35809 * 126.05611 * 89.99699 * 6 5 2 8 8 C 1.35758 * 107.56183 * 180.02562 * 7 6 5 9 9 N 1.40770 * 126.07980 * 180.02562 * 8 7 6 10 10 C 1.34769 * 119.99866 * 179.97438 * 9 8 7 11 11 O 1.21312 * 120.00325 * 359.97438 * 10 9 8 12 12 C 1.50697 * 119.99924 * 179.97438 * 10 9 8 13 13 C 1.53038 * 109.33086 * 216.04817 * 12 10 9 14 14 C 1.53543 * 108.56361 * 190.16819 * 13 12 10 15 15 N 1.47031 * 107.65739 * 60.95229 * 14 13 12 16 16 C 1.38926 * 118.88354 * 316.33366 * 15 14 13 17 17 C 1.31122 * 121.84526 * 13.31797 * 16 15 14 18 18 C 1.50696 * 118.54376 * 179.56767 * 17 16 15 19 19 O 1.42894 * 109.47410 * 258.37429 * 18 17 16 20 20 Si 1.86301 * 109.47148 * 18.37722 * 18 17 16 21 21 H 1.48503 * 109.47339 * 59.99748 * 20 18 17 22 22 H 1.48506 * 109.46963 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47146 * 299.99222 * 20 18 17 24 24 C 1.40249 * 107.83887 * 0.26203 * 8 7 6 25 25 N 1.30827 * 108.33720 * 359.55699 * 24 8 7 26 26 H 1.09008 * 109.46673 * 300.00248 * 1 2 3 27 27 H 1.08998 * 109.47310 * 59.99642 * 1 2 3 28 28 H 1.08996 * 109.47415 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47143 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.46962 * 299.99922 * 3 2 1 31 31 H 1.08996 * 109.47604 * 59.99960 * 3 2 1 32 32 H 1.09002 * 109.46955 * 299.99920 * 4 2 1 33 33 H 1.08996 * 109.47329 * 59.99258 * 4 2 1 34 34 H 1.08998 * 109.47353 * 180.02562 * 4 2 1 35 35 H 1.08996 * 109.47143 * 299.99779 * 5 2 1 36 36 H 1.09002 * 109.46657 * 179.97438 * 5 2 1 37 37 H 1.08000 * 126.22130 * 359.97438 * 7 6 5 38 38 H 0.96997 * 119.99743 * 359.97438 * 9 8 7 39 39 H 1.08994 * 109.19217 * 335.61965 * 12 10 9 40 40 H 1.09000 * 109.62490 * 70.44868 * 13 12 10 41 41 H 1.09008 * 109.62451 * 309.89013 * 13 12 10 42 42 H 1.08999 * 109.82574 * 301.41077 * 14 13 12 43 43 H 1.09006 * 109.82287 * 180.48994 * 14 13 12 44 44 H 0.96995 * 120.56139 * 136.31585 * 15 14 13 45 45 H 1.07997 * 119.07787 * 193.33996 * 16 15 14 46 46 H 1.09001 * 109.46685 * 138.37205 * 18 17 16 47 47 H 0.96700 * 114.00443 * 60.00047 * 19 18 17 48 48 H 1.08006 * 125.83255 * 179.73723 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8781 -1.5211 5 6 2.4840 -0.8781 1.5212 6 7 1.9957 -2.2594 1.5212 7 6 2.6258 -3.3299 0.9722 8 6 1.8448 -4.4194 1.1870 9 7 2.1289 -5.7364 0.7792 10 6 1.2627 -6.7302 1.0593 11 8 0.2384 -6.4898 1.6632 12 6 1.5666 -8.1400 0.6223 13 6 0.2656 -8.8357 0.2152 14 6 0.5516 -10.3316 0.0201 15 7 1.0269 -10.8660 1.3047 16 6 1.9534 -10.1325 2.0351 17 6 2.2222 -8.8805 1.7527 18 6 3.2333 -8.1523 2.6002 19 8 2.5543 -7.3081 3.5320 20 14 4.2735 -9.3895 3.5267 21 1 4.9792 -10.2667 2.5583 22 1 5.2702 -8.6718 4.3614 23 1 3.4005 -10.2160 4.3985 24 6 0.7021 -3.9984 1.8826 25 7 0.7960 -2.7096 2.0868 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.5740 1.7565 -0.0005 30 1 2.1206 2.2703 -0.8901 31 1 2.1207 2.2704 0.8899 32 1 2.1207 -1.9058 -1.5211 33 1 2.1206 -0.3644 -2.4111 34 1 3.5740 -0.8786 -1.5209 35 1 2.1207 -0.3643 2.4111 36 1 3.5740 -0.8785 1.5209 37 1 3.5752 -3.3168 0.4575 38 1 2.9481 -5.9287 0.2967 39 1 2.2434 -8.1125 -0.2315 40 1 -0.1014 -8.4085 -0.7181 41 1 -0.4804 -8.7048 0.9992 42 1 1.3190 -10.4649 -0.7424 43 1 -0.3614 -10.8464 -0.2794 44 1 0.6990 -11.7163 1.6368 45 1 2.4670 -10.6067 2.8583 46 1 3.8741 -7.5456 1.9603 47 1 1.9649 -7.7817 4.1349 48 1 -0.1146 -4.6307 2.1984 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_15608500.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:33:56 Heat of formation + Delta-G solvation = -2.365257 kcal Electronic energy + Delta-G solvation = -28110.050245 eV Core-core repulsion = 24325.733175 eV Total energy + Delta-G solvation = -3784.317070 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.24732 -41.08410 -39.13967 -37.42890 -35.67939 -33.82007 -33.19687 -32.68140 -30.32634 -29.51080 -28.36790 -28.33081 -27.49196 -26.67114 -25.72346 -23.21169 -22.79189 -22.00313 -21.00311 -19.23430 -19.02621 -18.20498 -17.81651 -17.29409 -16.60909 -16.58628 -16.27280 -15.76132 -15.65741 -15.18636 -15.00916 -14.83438 -14.49733 -14.36269 -14.16315 -14.14363 -13.97952 -13.82519 -13.79997 -13.69579 -13.38375 -13.23181 -13.19861 -13.12353 -13.01567 -12.68726 -12.27465 -12.08620 -12.02488 -11.76578 -11.68036 -11.57842 -11.33451 -11.24388 -10.83769 -10.79379 -10.57017 -10.12674 -9.94035 -8.46799 -8.40702 0.85063 1.25921 1.27999 1.43918 1.45698 1.54917 1.59378 1.70983 1.89150 1.95495 2.09941 2.32761 2.43162 2.59251 2.69490 3.65734 3.75794 3.83405 3.84684 3.98605 4.11473 4.22503 4.35737 4.39244 4.46340 4.62738 4.67576 4.69878 4.72469 4.75629 4.78443 4.80278 4.81500 4.84144 4.85102 4.87694 4.88855 4.89813 5.22258 5.27949 5.34029 5.50753 5.52089 5.61240 5.66208 5.92606 6.19642 6.35272 6.63709 6.79601 6.82994 6.96695 7.44216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.473 4.473 2 Si 1.092 2.908 3 C -0.453 4.453 4 C -0.457 4.457 5 C -0.189 4.189 6 N -0.342 5.342 7 C 0.020 3.980 8 C -0.009 4.009 9 N -0.630 5.630 10 C 0.535 3.465 11 O -0.566 6.566 12 C -0.029 4.029 13 C -0.125 4.125 14 C 0.123 3.877 15 N -0.749 5.749 16 C 0.143 3.857 17 C -0.288 4.288 18 C -0.064 4.064 19 O -0.556 6.556 20 Si 0.982 3.018 21 H -0.251 1.251 22 H -0.287 1.287 23 H -0.257 1.257 24 C 0.024 3.976 25 N -0.322 5.322 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.045 0.955 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.128 0.872 37 H 0.215 0.785 38 H 0.421 0.579 39 H 0.111 0.889 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.097 0.903 44 H 0.411 0.589 45 H 0.139 0.861 46 H 0.112 0.888 47 H 0.377 0.623 48 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.185 -2.611 -5.476 8.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.577 4.577 2 Si 1.281 2.719 3 C -0.562 4.562 4 C -0.564 4.564 5 C -0.353 4.353 6 N -0.125 5.125 7 C -0.129 4.129 8 C -0.113 4.113 9 N -0.275 5.275 10 C 0.323 3.677 11 O -0.444 6.444 12 C -0.051 4.051 13 C -0.164 4.164 14 C -0.001 4.001 15 N -0.379 5.379 16 C 0.020 3.980 17 C -0.300 4.300 18 C -0.176 4.176 19 O -0.362 6.362 20 Si 0.808 3.192 21 H -0.175 1.175 22 H -0.213 1.213 23 H -0.182 1.182 24 C -0.161 4.161 25 N -0.147 5.147 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.118 0.882 36 H 0.146 0.854 37 H 0.231 0.769 38 H 0.259 0.741 39 H 0.129 0.871 40 H 0.102 0.898 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.115 0.885 44 H 0.247 0.753 45 H 0.156 0.844 46 H 0.130 0.870 47 H 0.225 0.775 48 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 5.750 -1.456 -4.506 7.449 hybrid contribution -0.369 -1.224 0.133 1.285 sum 5.381 -2.681 -4.374 7.434 Atomic orbital electron populations 1.26485 1.24273 1.03013 1.03959 0.78306 0.64158 0.65893 0.63549 1.26125 1.07286 1.17772 1.05038 1.26198 1.07367 1.07642 1.15242 1.27382 1.06402 0.82055 1.19455 1.48189 1.14784 1.07538 1.41989 1.22445 1.00858 0.85479 1.04094 1.17792 0.97791 0.86268 1.09475 1.42734 1.24236 1.03784 1.56753 1.20798 0.82180 0.86968 0.77709 1.90543 1.28265 1.83926 1.41659 1.19651 0.98388 0.89111 0.97931 1.21781 0.95875 0.96485 1.02278 1.21677 1.00482 0.92506 0.85431 1.44654 1.46449 1.24445 1.22322 1.20700 0.90709 0.91761 0.94806 1.20449 1.09311 0.94479 1.05730 1.24777 0.97908 1.00877 0.93989 1.86542 1.63045 1.37450 1.49153 0.85289 0.77900 0.76795 0.79168 1.17483 1.21298 1.18207 1.24207 0.99886 0.91840 1.00155 1.77336 1.03369 1.12636 1.21342 0.91946 0.91157 0.93571 0.89651 0.90622 0.90956 0.92138 0.90884 0.89356 0.88207 0.85353 0.76868 0.74120 0.87093 0.89844 0.92420 0.90720 0.88511 0.75321 0.84440 0.86982 0.77520 0.80403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 -1.33 8.65 113.37 0.98 -0.35 16 2 Si 1.09 -5.71 12.79 68.60 0.88 -4.83 16 3 C -0.45 2.79 8.65 113.37 0.98 3.77 16 4 C -0.46 2.22 8.65 113.37 0.98 3.20 16 5 C -0.19 0.48 5.59 127.77 0.71 1.20 16 6 N -0.34 -1.68 3.01 -182.93 -0.55 -2.24 16 7 C 0.02 0.04 11.44 83.50 0.96 0.99 16 8 C -0.01 -0.06 6.90 37.62 0.26 0.20 16 9 N -0.63 -1.62 5.47 -304.05 -1.66 -3.28 16 10 C 0.53 3.30 4.94 87.66 0.43 3.74 16 11 O -0.57 -8.33 13.25 -3.13 -0.04 -8.37 16 12 C -0.03 0.00 2.69 -12.43 -0.03 -0.03 16 13 C -0.13 0.02 5.31 30.79 0.16 0.19 16 14 C 0.12 -0.62 7.16 86.46 0.62 0.00 16 15 N -0.75 2.99 5.83 -345.88 -2.02 0.98 16 16 C 0.14 -0.27 9.61 83.41 0.80 0.53 16 17 C -0.29 0.10 5.00 -16.77 -0.08 0.01 16 18 C -0.06 0.02 2.21 71.23 0.16 0.17 16 19 O -0.56 -2.95 11.72 -148.98 -1.75 -4.69 16 20 Si 0.98 -1.20 25.53 68.60 1.75 0.55 16 21 H -0.25 0.36 7.11 99.48 0.71 1.07 16 22 H -0.29 -1.07 7.11 99.48 0.71 -0.36 16 23 H -0.26 0.35 6.61 99.48 0.66 1.01 16 24 C 0.02 0.34 10.84 85.33 0.92 1.26 16 25 N -0.32 -4.30 12.56 -56.77 -0.71 -5.02 16 26 H 0.06 0.24 7.96 -2.38 -0.02 0.22 16 27 H 0.07 0.11 7.96 -2.39 -0.02 0.09 16 28 H 0.04 0.37 7.96 -2.39 -0.02 0.35 16 29 H 0.08 -0.70 7.96 -2.39 -0.02 -0.72 16 30 H 0.07 -0.42 7.96 -2.38 -0.02 -0.44 16 31 H 0.07 -0.40 7.96 -2.39 -0.02 -0.41 16 32 H 0.06 -0.12 7.96 -2.39 -0.02 -0.14 16 33 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 34 H 0.09 -0.72 7.96 -2.39 -0.02 -0.73 16 35 H 0.10 -0.14 7.96 -2.39 -0.02 -0.16 16 36 H 0.13 -1.12 7.96 -2.39 -0.02 -1.14 16 37 H 0.21 -1.63 8.06 -2.91 -0.02 -1.65 16 38 H 0.42 -2.15 8.79 -92.71 -0.81 -2.96 16 39 H 0.11 -0.61 8.09 -2.39 -0.02 -0.63 16 40 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 41 H 0.06 0.35 7.51 -2.38 -0.02 0.34 16 42 H 0.07 -0.52 8.14 -2.39 -0.02 -0.54 16 43 H 0.10 -0.75 8.14 -2.38 -0.02 -0.77 16 44 H 0.41 -3.07 8.96 -92.71 -0.83 -3.90 16 45 H 0.14 -0.57 4.43 -2.91 -0.01 -0.58 16 46 H 0.11 -0.30 7.96 -2.39 -0.02 -0.32 16 47 H 0.38 0.64 8.70 -74.06 -0.64 0.00 16 48 H 0.18 3.21 5.92 -2.91 -0.02 3.20 16 Total: 0.00 -24.87 389.08 3.15 -21.72 By element: Atomic # 1 Polarization: -9.10 SS G_CDS: -0.60 Total: -9.69 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: 7.85 Total: 14.87 kcal Atomic # 7 Polarization: -4.61 SS G_CDS: -4.94 Total: -9.56 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: -1.79 Total: -13.06 kcal Atomic # 14 Polarization: -6.91 SS G_CDS: 2.63 Total: -4.28 kcal Total: -24.87 3.15 -21.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_15608500.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.353 kcal (2) G-P(sol) polarization free energy of solvation -24.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds