Wall clock time and date at job start Sun Mar 7 2021 10:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86299 * 109.47007 * 2 1 4 4 C 1.86297 * 109.47148 * 239.99794 * 2 1 3 5 5 C 1.86307 * 109.47083 * 120.00008 * 2 1 3 6 6 N 1.46495 * 109.46946 * 59.99797 * 5 2 1 7 7 C 1.35835 * 126.05857 * 270.29187 * 6 5 2 8 8 C 1.35759 * 107.55906 * 180.19318 * 7 6 5 9 9 N 1.40752 * 126.07925 * 179.83860 * 8 7 6 10 10 C 1.34771 * 119.99953 * 179.71997 * 9 8 7 11 11 O 1.21649 * 120.00158 * 0.02562 * 10 9 8 12 12 C 1.47261 * 119.99689 * 180.02562 * 10 9 8 13 13 C 1.36339 * 126.96509 * 180.02562 * 12 10 9 14 14 C 1.50994 * 126.79729 * 0.03094 * 13 12 10 15 15 C 1.53397 * 108.24685 * 164.28162 * 14 13 12 16 16 C 1.53160 * 109.04377 * 48.48273 * 15 14 13 17 17 C 1.53109 * 109.55051 * 290.44146 * 16 15 14 18 18 N 1.35226 * 108.65686 * 180.02562 * 13 12 10 19 19 C 1.36416 * 109.89951 * 359.97438 * 18 13 12 20 20 C 1.50700 * 125.49995 * 180.02562 * 19 18 13 21 21 O 1.42905 * 109.46921 * 329.98292 * 20 19 18 22 22 Si 1.86301 * 109.47565 * 209.98547 * 20 19 18 23 23 H 1.48497 * 109.46997 * 59.99969 * 22 20 19 24 24 H 1.48504 * 109.47023 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46920 * 299.99695 * 22 20 19 26 26 C 1.34504 * 109.01463 * 0.02562 * 19 18 13 27 27 C 1.40259 * 107.84082 * 359.58473 * 8 7 6 28 28 N 1.30829 * 108.33890 * 0.25610 * 27 8 7 29 29 H 1.09000 * 109.47284 * 300.00103 * 1 2 3 30 30 H 1.08998 * 109.46887 * 60.00138 * 1 2 3 31 31 H 1.08999 * 109.47215 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46960 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47184 * 299.99680 * 3 2 1 34 34 H 1.08998 * 109.47314 * 60.00359 * 3 2 1 35 35 H 1.09001 * 109.47663 * 300.00310 * 4 2 1 36 36 H 1.09004 * 109.46935 * 59.99859 * 4 2 1 37 37 H 1.09000 * 109.47122 * 180.02562 * 4 2 1 38 38 H 1.09000 * 109.46970 * 300.00081 * 5 2 1 39 39 H 1.09000 * 109.47157 * 179.97438 * 5 2 1 40 40 H 1.07992 * 126.22048 * 0.06180 * 7 6 5 41 41 H 0.97002 * 119.99353 * 359.71839 * 9 8 7 42 42 H 1.08997 * 109.70722 * 44.59691 * 14 13 12 43 43 H 1.08991 * 109.71189 * 283.97476 * 14 13 12 44 44 H 1.09006 * 109.53968 * 168.35046 * 15 14 13 45 45 H 1.08997 * 109.54371 * 288.60657 * 15 14 13 46 46 H 1.08998 * 109.46373 * 50.43779 * 16 15 14 47 47 H 1.09004 * 109.45619 * 170.40276 * 16 15 14 48 48 H 1.08996 * 109.50289 * 291.14103 * 17 16 15 49 49 H 1.08991 * 109.70001 * 170.86152 * 17 16 15 50 50 H 1.09003 * 109.47375 * 89.98384 * 20 19 18 51 51 H 0.96694 * 114.00277 * 299.99930 * 21 20 19 52 52 H 1.07999 * 126.82031 * 179.97438 * 26 19 18 53 53 H 1.08005 * 125.82804 * 180.26150 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8783 1.5212 6 7 1.9956 -2.2594 1.5212 7 6 0.8299 -2.6953 2.0654 8 6 0.7554 -4.0345 1.8557 9 7 -0.2928 -4.8804 2.2640 10 6 -0.2431 -6.1980 1.9848 11 8 0.7079 -6.6562 1.3802 12 6 -1.3401 -7.0829 2.4116 13 6 -1.4357 -8.4274 2.2067 14 6 -0.4355 -9.3074 1.4961 15 6 -0.7496 -10.7683 1.8427 16 6 -2.2479 -11.0176 1.6464 17 6 -3.0374 -10.2678 2.7229 18 7 -2.5932 -8.8666 2.7508 19 6 -3.2660 -7.8230 3.3158 20 6 -4.5951 -7.9172 4.0198 21 8 -5.3596 -8.9835 3.4534 22 14 -5.5208 -6.3133 3.8164 23 1 -5.7433 -6.0500 2.3719 24 1 -6.8308 -6.4064 4.5096 25 1 -4.7264 -5.2053 4.4049 26 6 -2.5519 -6.6963 3.1433 27 6 1.9060 -4.4243 1.1546 28 7 2.6457 -3.3637 0.9554 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.5740 1.7564 0.0005 33 1 2.1207 2.2703 -0.8900 34 1 2.1207 2.2703 0.8900 35 1 2.1207 -1.9059 -1.5212 36 1 2.1206 -0.3644 -2.4111 37 1 3.5740 -0.8787 -1.5208 38 1 2.1207 -0.3644 2.4112 39 1 3.5740 -0.8787 1.5210 40 1 0.0967 -2.0873 2.5744 41 1 -1.0508 -4.5150 2.7465 42 1 0.5728 -9.0596 1.8275 43 1 -0.5157 -9.1597 0.4192 44 1 -0.1812 -11.4287 1.1877 45 1 -0.4805 -10.9627 2.8809 46 1 -2.5494 -10.6612 0.6614 47 1 -2.4516 -12.0856 1.7241 48 1 -2.8557 -10.7279 3.6941 49 1 -4.1020 -10.3086 2.4931 50 1 -4.4319 -8.1105 5.0801 51 1 -5.5434 -8.8778 2.5100 52 1 -2.8177 -5.7042 3.4770 53 1 2.1411 -5.4284 0.8339 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_16915396.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:34:09 Heat of formation + Delta-G solvation = 17.339457 kcal Electronic energy + Delta-G solvation = -32515.527312 eV Core-core repulsion = 28320.074803 eV Total energy + Delta-G solvation = -4195.452509 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.184 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.82202 -42.19796 -40.07193 -37.94418 -36.86473 -35.75873 -33.74884 -33.36351 -31.18853 -30.64403 -29.57495 -29.23832 -28.37198 -28.32504 -27.08234 -26.34499 -24.64463 -24.25040 -22.52233 -21.92155 -21.71521 -20.68613 -19.58637 -18.80014 -18.22105 -17.41290 -16.81277 -16.70607 -16.55594 -16.36478 -16.06821 -15.67508 -15.51863 -15.30146 -15.12619 -15.01817 -14.73174 -14.64130 -14.48787 -14.17607 -14.15075 -14.00134 -13.94978 -13.81918 -13.78097 -13.40556 -13.23832 -13.20427 -13.13493 -13.01933 -12.73154 -12.37166 -12.13794 -12.08344 -11.97520 -11.93994 -11.75795 -11.73414 -11.69092 -11.31604 -10.84733 -10.84175 -10.79481 -10.62493 -9.99224 -9.64261 -9.09369 -8.50947 0.56108 0.90371 0.99966 1.35231 1.40499 1.56934 1.60469 1.68569 1.81581 1.82190 1.88648 2.02894 2.11264 2.44858 2.58354 2.64690 3.34032 3.49674 3.60538 3.70677 3.78294 3.83040 3.84468 3.98140 4.14269 4.31988 4.36971 4.37251 4.42939 4.57009 4.63064 4.63997 4.69806 4.71976 4.74983 4.76043 4.77606 4.81989 4.83434 4.84139 4.86849 4.87607 4.89100 4.98429 5.03163 5.15930 5.22351 5.24058 5.51810 5.60663 5.65964 5.69350 5.85119 6.03176 6.12651 6.22965 6.55188 6.57625 6.76664 7.32303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.459 4.459 2 Si 1.092 2.908 3 C -0.453 4.453 4 C -0.474 4.474 5 C -0.189 4.189 6 N -0.341 5.341 7 C 0.027 3.973 8 C -0.018 4.018 9 N -0.629 5.629 10 C 0.588 3.412 11 O -0.572 6.572 12 C -0.253 4.253 13 C 0.109 3.891 14 C -0.054 4.054 15 C -0.125 4.125 16 C -0.134 4.134 17 C 0.095 3.905 18 N -0.424 5.424 19 C -0.011 4.011 20 C -0.054 4.054 21 O -0.549 6.549 22 Si 1.007 2.993 23 H -0.263 1.263 24 H -0.270 1.270 25 H -0.243 1.243 26 C -0.178 4.178 27 C 0.022 3.978 28 N -0.318 5.318 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.045 0.955 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.131 0.869 39 H 0.102 0.898 40 H 0.218 0.782 41 H 0.422 0.578 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.065 0.935 46 H 0.073 0.927 47 H 0.108 0.892 48 H 0.085 0.915 49 H 0.121 0.879 50 H 0.130 0.870 51 H 0.389 0.611 52 H 0.169 0.831 53 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.643 2.705 2.941 7.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.566 4.566 2 Si 1.282 2.718 3 C -0.562 4.562 4 C -0.578 4.578 5 C -0.353 4.353 6 N -0.123 5.123 7 C -0.123 4.123 8 C -0.123 4.123 9 N -0.274 5.274 10 C 0.379 3.621 11 O -0.453 6.453 12 C -0.263 4.263 13 C -0.010 4.010 14 C -0.092 4.092 15 C -0.163 4.163 16 C -0.172 4.172 17 C -0.025 4.025 18 N -0.100 5.100 19 C -0.120 4.120 20 C -0.164 4.164 21 O -0.356 6.356 22 Si 0.828 3.172 23 H -0.187 1.187 24 H -0.195 1.195 25 H -0.166 1.166 26 C -0.202 4.202 27 C -0.163 4.163 28 N -0.142 5.142 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.149 0.851 39 H 0.121 0.879 40 H 0.234 0.766 41 H 0.260 0.740 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.106 0.894 45 H 0.084 0.916 46 H 0.091 0.909 47 H 0.126 0.874 48 H 0.103 0.897 49 H 0.139 0.861 50 H 0.148 0.852 51 H 0.238 0.762 52 H 0.186 0.814 53 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -5.426 3.089 2.598 6.763 hybrid contribution -0.324 -0.742 -0.065 0.813 sum -5.750 2.347 2.533 6.707 Atomic orbital electron populations 1.26226 1.20650 1.04210 1.05551 0.78294 0.66343 0.64917 0.62273 1.26119 1.06692 1.17822 1.05564 1.26494 1.06169 1.07473 1.17673 1.27394 1.06943 0.80747 1.20213 1.48248 1.14789 1.07233 1.42065 1.22472 0.92836 0.93504 1.03445 1.17831 0.93697 0.90590 1.10176 1.42423 1.21738 1.06260 1.56992 1.17580 0.85193 0.81289 0.78031 1.90632 1.35786 1.75737 1.43102 1.19745 0.98938 0.93060 1.14521 1.20528 0.88826 0.93164 0.98483 1.20449 0.96225 0.93054 0.99477 1.21706 0.96852 0.95069 1.02663 1.21930 0.94389 1.02264 0.98577 1.22508 1.01896 0.76755 1.01318 1.44057 1.15110 1.08667 1.42120 1.21033 0.98341 0.87119 1.05517 1.24903 0.87860 1.03343 1.00257 1.86474 1.73360 1.45790 1.29968 0.84895 0.77931 0.73834 0.80528 1.18679 1.19456 1.16581 1.22018 0.94479 0.98734 1.04938 1.24310 0.93058 0.98761 1.00142 1.77358 1.21838 0.93281 1.21745 0.89314 0.90937 0.92223 0.90888 0.90670 0.89622 0.93591 0.91209 0.91839 0.85100 0.87919 0.76570 0.73982 0.90139 0.89987 0.89376 0.91612 0.90859 0.87412 0.89657 0.86113 0.85232 0.76172 0.81360 0.79915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.24 8.65 113.37 0.98 3.22 16 2 Si 1.09 -6.17 12.78 68.60 0.88 -5.29 16 3 C -0.45 2.98 8.65 113.37 0.98 3.96 16 4 C -0.47 -1.19 8.65 113.37 0.98 -0.21 16 5 C -0.19 0.65 5.59 127.77 0.71 1.37 16 6 N -0.34 -1.44 3.02 -182.92 -0.55 -1.99 16 7 C 0.03 0.04 11.43 83.50 0.95 1.00 16 8 C -0.02 -0.14 6.90 37.62 0.26 0.12 16 9 N -0.63 -3.15 5.47 -307.10 -1.68 -4.83 16 10 C 0.59 5.98 7.78 86.62 0.67 6.65 16 11 O -0.57 -9.29 12.49 -4.19 -0.05 -9.34 16 12 C -0.25 -1.70 6.28 -19.12 -0.12 -1.82 16 13 C 0.11 0.61 6.57 41.69 0.27 0.88 16 14 C -0.05 -0.24 5.32 30.07 0.16 -0.08 16 15 C -0.13 0.17 5.98 30.78 0.18 0.35 16 16 C -0.13 0.64 5.92 30.68 0.18 0.82 16 17 C 0.09 -0.35 6.22 86.32 0.54 0.18 16 18 N -0.42 -0.49 3.11 -493.65 -1.54 -2.03 16 19 C -0.01 0.00 6.15 40.99 0.25 0.25 16 20 C -0.05 0.25 3.00 71.24 0.21 0.46 16 21 O -0.55 2.72 10.28 -148.98 -1.53 1.19 16 22 Si 1.01 -5.13 26.55 68.60 1.82 -3.31 16 23 H -0.26 0.76 7.11 99.48 0.71 1.46 16 24 H -0.27 0.52 7.11 99.48 0.71 1.23 16 25 H -0.24 1.42 6.80 99.48 0.68 2.10 16 26 C -0.18 -0.18 9.09 23.64 0.21 0.03 16 27 C 0.02 0.30 10.84 85.33 0.92 1.23 16 28 N -0.32 -3.99 12.56 -56.77 -0.71 -4.70 16 29 H 0.09 -0.73 7.96 -2.39 -0.02 -0.75 16 30 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 31 H 0.06 -0.11 7.96 -2.39 -0.02 -0.13 16 32 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 33 H 0.07 -0.43 7.96 -2.39 -0.02 -0.45 16 34 H 0.08 -0.75 7.96 -2.39 -0.02 -0.76 16 35 H 0.04 0.36 7.96 -2.39 -0.02 0.34 16 36 H 0.07 0.10 7.96 -2.38 -0.02 0.08 16 37 H 0.06 0.21 7.96 -2.39 -0.02 0.20 16 38 H 0.13 -1.29 7.96 -2.39 -0.02 -1.31 16 39 H 0.10 -0.27 7.96 -2.39 -0.02 -0.29 16 40 H 0.22 -1.76 8.06 -2.91 -0.02 -1.79 16 41 H 0.42 -0.92 7.95 -92.71 -0.74 -1.66 16 42 H 0.08 0.67 7.40 -2.39 -0.02 0.65 16 43 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.09 -0.27 8.14 -2.38 -0.02 -0.29 16 45 H 0.07 -0.04 8.12 -2.39 -0.02 -0.06 16 46 H 0.07 -0.29 8.11 -2.39 -0.02 -0.31 16 47 H 0.11 -0.89 8.14 -2.38 -0.02 -0.91 16 48 H 0.09 -0.33 8.14 -2.39 -0.02 -0.34 16 49 H 0.12 -0.80 5.67 -2.39 -0.01 -0.82 16 50 H 0.13 -0.81 7.96 -2.39 -0.02 -0.82 16 51 H 0.39 -3.97 8.27 -74.06 -0.61 -4.58 16 52 H 0.17 -0.77 6.32 -2.91 -0.02 -0.79 16 53 H 0.18 3.11 5.91 -2.91 -0.02 3.10 16 Total: 0.00 -24.44 424.24 5.31 -19.13 By element: Atomic # 1 Polarization: -7.57 SS G_CDS: 0.31 Total: -7.27 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: 8.37 Total: 18.42 kcal Atomic # 7 Polarization: -9.06 SS G_CDS: -4.48 Total: -13.54 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -1.58 Total: -8.15 kcal Atomic # 14 Polarization: -11.30 SS G_CDS: 2.70 Total: -8.60 kcal Total: -24.44 5.31 -19.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_16915396.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.473 kcal (2) G-P(sol) polarization free energy of solvation -24.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds