Wall clock time and date at job start Sun Mar 7 2021 10:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86299 * 109.47593 * 2 1 4 4 C 1.86308 * 109.47343 * 239.99826 * 2 1 3 5 5 C 1.86300 * 109.46849 * 120.00043 * 2 1 3 6 6 N 1.46496 * 109.47208 * 60.00198 * 5 2 1 7 7 C 1.35808 * 126.05774 * 90.00246 * 6 5 2 8 8 C 1.35751 * 107.56625 * 179.97438 * 7 6 5 9 9 N 1.40761 * 126.08160 * 179.97438 * 8 7 6 10 10 C 1.34782 * 120.00183 * 179.97438 * 9 8 7 11 11 O 1.21305 * 119.99713 * 0.02562 * 10 9 8 12 12 C 1.50693 * 120.00106 * 180.02562 * 10 9 8 13 13 O 1.42903 * 109.47218 * 180.02562 * 12 10 9 14 14 C 1.35897 * 117.00214 * 179.97438 * 13 12 10 15 15 C 1.38709 * 120.05637 * 359.95484 * 14 13 12 16 16 C 1.38172 * 119.94642 * 179.97438 * 15 14 13 17 17 C 1.38245 * 120.05216 * 0.02562 * 16 15 14 18 18 C 1.38287 * 120.11339 * 0.02562 * 17 16 15 19 19 C 1.38125 * 120.05453 * 359.95334 * 18 17 16 20 20 C 1.50699 * 120.02390 * 180.02562 * 19 18 17 21 21 O 1.42895 * 109.47124 * 105.00291 * 20 19 18 22 22 Si 1.86302 * 109.47415 * 344.99961 * 20 19 18 23 23 H 1.48499 * 109.47007 * 59.99977 * 22 20 19 24 24 H 1.48500 * 109.46966 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46711 * 300.00285 * 22 20 19 26 26 C 1.40252 * 107.83893 * 0.26019 * 8 7 6 27 27 N 1.30829 * 108.33236 * 359.55420 * 26 8 7 28 28 H 1.08995 * 109.46972 * 300.00260 * 1 2 3 29 29 H 1.09002 * 109.46889 * 60.00061 * 1 2 3 30 30 H 1.09004 * 109.47027 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47385 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.47210 * 300.00376 * 3 2 1 33 33 H 1.09005 * 109.46802 * 59.99474 * 3 2 1 34 34 H 1.08999 * 109.47118 * 300.00496 * 4 2 1 35 35 H 1.09004 * 109.46519 * 60.00200 * 4 2 1 36 36 H 1.08992 * 109.47318 * 180.02562 * 4 2 1 37 37 H 1.08995 * 109.47086 * 299.99627 * 5 2 1 38 38 H 1.09009 * 109.47236 * 179.97438 * 5 2 1 39 39 H 1.08003 * 126.21507 * 359.97438 * 7 6 5 40 40 H 0.96999 * 120.00059 * 0.02562 * 9 8 7 41 41 H 1.08997 * 109.47633 * 60.00409 * 12 10 9 42 42 H 1.09008 * 109.47230 * 300.00084 * 12 10 9 43 43 H 1.08002 * 120.02844 * 0.04164 * 15 14 13 44 44 H 1.08002 * 119.97211 * 180.29545 * 16 15 14 45 45 H 1.07997 * 119.93859 * 179.97438 * 17 16 15 46 46 H 1.07998 * 119.97069 * 179.97438 * 18 17 16 47 47 H 1.09005 * 109.46839 * 225.00112 * 20 19 18 48 48 H 0.96697 * 114.00132 * 59.99807 * 21 20 19 49 49 H 1.07999 * 125.83682 * 179.73992 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4841 -0.8783 -1.5212 5 6 2.4839 -0.8783 1.5212 6 7 1.9956 -2.2594 1.5211 7 6 2.6257 -3.3300 0.9722 8 6 1.8452 -4.4196 1.1879 9 7 2.1290 -5.7365 0.7797 10 6 1.2634 -6.7306 1.0609 11 8 0.2395 -6.4903 1.6654 12 6 1.5675 -8.1405 0.6244 13 8 0.5071 -9.0057 1.0358 14 6 0.6259 -10.3216 0.7177 15 6 1.7394 -10.7707 0.0231 16 6 1.8581 -12.1091 -0.2987 17 6 0.8679 -13.0004 0.0706 18 6 -0.2437 -12.5550 0.7621 19 6 -0.3668 -11.2181 1.0865 20 6 -1.5782 -10.7336 1.8407 21 8 -1.2205 -10.4721 3.1992 22 14 -2.9058 -12.0396 1.7884 23 1 -2.3984 -13.2865 2.4154 24 1 -4.0997 -11.5618 2.5310 25 1 -3.2774 -12.3113 0.3765 26 6 0.7027 -3.9988 1.8841 27 7 0.7965 -2.7099 2.0878 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.5741 1.7563 0.0005 32 1 2.1208 2.2703 -0.8900 33 1 2.1207 2.2702 0.8900 34 1 2.1207 -1.9059 -1.5212 35 1 2.1207 -0.3644 -2.4111 36 1 3.5740 -0.8787 -1.5209 37 1 2.1206 -0.3644 2.4111 38 1 3.5740 -0.8787 1.5210 39 1 3.5751 -3.3169 0.4576 40 1 2.9480 -5.9287 0.2967 41 1 2.5018 -8.4684 1.0800 42 1 1.6616 -8.1725 -0.4611 43 1 2.5136 -10.0749 -0.2649 44 1 2.7272 -12.4601 -0.8352 45 1 0.9624 -14.0461 -0.1823 46 1 -1.0161 -13.2532 1.0490 47 1 -1.9507 -9.8183 1.3804 48 1 -0.5326 -9.8004 3.3025 49 1 -0.1134 -4.6312 2.2008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_2989392.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:34:26 Heat of formation + Delta-G solvation = -29.172974 kcal Electronic energy + Delta-G solvation = -29660.954520 eV Core-core repulsion = 25521.304037 eV Total energy + Delta-G solvation = -4139.650483 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 363.157 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.36747 -41.55022 -40.39830 -38.47546 -37.45811 -35.93868 -33.73719 -32.73869 -31.47380 -30.69795 -29.58341 -29.09192 -28.38169 -28.31480 -26.79221 -26.61825 -23.93845 -22.81968 -22.58297 -22.04825 -21.05790 -19.43025 -18.59463 -18.31936 -17.88583 -17.50598 -17.19799 -16.75672 -16.58555 -16.42470 -15.87809 -15.59609 -15.47866 -15.22535 -15.08341 -14.89006 -14.36759 -14.19387 -14.15603 -14.02116 -13.89975 -13.83086 -13.74386 -13.43866 -13.41321 -13.21442 -13.14082 -13.02283 -12.71689 -12.62003 -12.28606 -12.20435 -12.07316 -11.84021 -11.76218 -11.38242 -11.18699 -11.04895 -10.92043 -10.85052 -10.80287 -10.03762 -9.94508 -9.23184 -8.64345 0.23772 0.39403 0.73918 1.17439 1.22049 1.26555 1.45198 1.49275 1.58958 1.69898 1.87817 1.92958 2.05265 2.12583 2.57562 2.59093 2.70557 3.50231 3.63184 3.76181 3.83125 3.94982 3.99390 4.01877 4.10434 4.12787 4.27208 4.28885 4.32683 4.51357 4.57353 4.67384 4.68679 4.70307 4.73066 4.74829 4.83354 4.84588 4.87089 4.88856 4.95659 5.07792 5.25786 5.38338 5.50850 5.52689 5.60754 5.65738 5.70884 5.76470 6.08262 6.25582 6.44225 6.57546 6.69032 7.13371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.477 4.477 2 Si 1.097 2.903 3 C -0.456 4.456 4 C -0.457 4.457 5 C -0.190 4.190 6 N -0.340 5.340 7 C 0.036 3.964 8 C -0.024 4.024 9 N -0.620 5.620 10 C 0.509 3.491 11 O -0.554 6.554 12 C 0.045 3.955 13 O -0.314 6.314 14 C 0.127 3.873 15 C -0.204 4.204 16 C -0.077 4.077 17 C -0.155 4.155 18 C -0.101 4.101 19 C -0.163 4.163 20 C -0.092 4.092 21 O -0.553 6.553 22 Si 1.039 2.961 23 H -0.254 1.254 24 H -0.279 1.279 25 H -0.237 1.237 26 C 0.020 3.980 27 N -0.321 5.321 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.134 0.866 39 H 0.224 0.776 40 H 0.433 0.567 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.163 0.837 44 H 0.156 0.844 45 H 0.147 0.853 46 H 0.134 0.866 47 H 0.069 0.931 48 H 0.373 0.627 49 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.253 1.417 -7.360 13.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.581 4.581 2 Si 1.286 2.714 3 C -0.564 4.564 4 C -0.565 4.565 5 C -0.353 4.353 6 N -0.122 5.122 7 C -0.113 4.113 8 C -0.129 4.129 9 N -0.268 5.268 10 C 0.296 3.704 11 O -0.431 6.431 12 C -0.033 4.033 13 O -0.228 6.228 14 C 0.082 3.918 15 C -0.222 4.222 16 C -0.095 4.095 17 C -0.173 4.173 18 C -0.119 4.119 19 C -0.164 4.164 20 C -0.199 4.199 21 O -0.359 6.359 22 Si 0.859 3.141 23 H -0.179 1.179 24 H -0.204 1.204 25 H -0.160 1.160 26 C -0.165 4.165 27 N -0.145 5.145 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.152 0.848 39 H 0.241 0.759 40 H 0.272 0.728 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.181 0.819 44 H 0.174 0.826 45 H 0.165 0.835 46 H 0.151 0.849 47 H 0.087 0.913 48 H 0.222 0.778 49 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 8.775 1.717 -6.192 10.876 hybrid contribution 1.066 0.084 -0.250 1.098 sum 9.840 1.801 -6.441 11.898 Atomic orbital electron populations 1.26538 1.24645 1.02973 1.03896 0.78233 0.63802 0.65829 0.63581 1.26152 1.07354 1.17965 1.04961 1.26199 1.07495 1.07669 1.15120 1.27404 1.06693 0.81778 1.19465 1.48297 1.14663 1.07765 1.41509 1.22577 1.00816 0.85010 1.02901 1.17727 0.98274 0.85996 1.10859 1.42325 1.24349 1.03371 1.56801 1.20597 0.83191 0.87162 0.79408 1.90676 1.27558 1.83822 1.41073 1.22622 0.91548 0.85607 1.03517 1.86063 1.45348 1.15790 1.75555 1.18905 0.94887 0.82301 0.95753 1.21631 0.98461 0.98498 1.03651 1.21409 0.98961 0.92249 0.96861 1.21396 0.94183 1.01543 1.00137 1.21163 0.99355 0.93627 0.97713 1.19725 0.97895 0.93624 1.05132 1.25348 1.02091 1.08697 0.83808 1.86618 1.61689 1.63575 1.24065 0.84174 0.74116 0.75376 0.80419 1.17862 1.20449 1.16024 1.24294 0.99840 0.92068 1.00275 1.77403 1.03379 1.12505 1.21248 0.92028 0.91301 0.93579 0.89560 0.90763 0.91046 0.91982 0.91022 0.89141 0.88053 0.84807 0.75930 0.72778 0.85288 0.85400 0.81932 0.82626 0.83542 0.84860 0.91277 0.77833 0.80341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 -0.59 8.65 113.37 0.98 0.39 16 2 Si 1.10 -8.31 12.79 68.60 0.88 -7.44 16 3 C -0.46 3.58 8.65 113.37 0.98 4.56 16 4 C -0.46 3.40 8.65 113.37 0.98 4.38 16 5 C -0.19 1.10 5.59 127.77 0.71 1.82 16 6 N -0.34 -0.41 3.01 -182.93 -0.55 -0.96 16 7 C 0.04 -0.11 11.44 83.50 0.96 0.85 16 8 C -0.02 -0.06 6.90 37.62 0.26 0.20 16 9 N -0.62 2.32 5.47 -304.05 -1.66 0.65 16 10 C 0.51 0.86 7.88 87.65 0.69 1.55 16 11 O -0.55 -7.00 13.66 15.93 0.22 -6.78 16 12 C 0.04 -0.24 5.22 71.23 0.37 0.14 16 13 O -0.31 -1.12 8.58 -73.36 -0.63 -1.75 16 14 C 0.13 0.35 6.62 22.51 0.15 0.50 16 15 C -0.20 0.63 9.04 22.37 0.20 0.84 16 16 C -0.08 0.26 10.04 22.26 0.22 0.48 16 17 C -0.15 0.11 10.04 22.28 0.22 0.33 16 18 C -0.10 -0.33 8.66 22.25 0.19 -0.14 16 19 C -0.16 -0.92 5.28 -19.77 -0.10 -1.02 16 20 C -0.09 -0.70 2.33 71.24 0.17 -0.54 16 21 O -0.55 -5.77 12.65 -148.98 -1.89 -7.65 16 22 Si 1.04 5.57 25.75 68.60 1.77 7.33 16 23 H -0.25 -1.34 6.73 99.48 0.67 -0.67 16 24 H -0.28 -2.43 7.11 99.48 0.71 -1.72 16 25 H -0.24 -0.73 7.11 99.48 0.71 -0.02 16 26 C 0.02 0.21 10.84 85.33 0.92 1.14 16 27 N -0.32 -3.28 12.56 -56.77 -0.71 -3.99 16 28 H 0.06 0.16 7.96 -2.39 -0.02 0.14 16 29 H 0.07 0.03 7.96 -2.39 -0.02 0.01 16 30 H 0.04 0.29 7.96 -2.38 -0.02 0.27 16 31 H 0.09 -0.87 7.96 -2.39 -0.02 -0.89 16 32 H 0.07 -0.50 7.96 -2.39 -0.02 -0.52 16 33 H 0.07 -0.50 7.96 -2.38 -0.02 -0.51 16 34 H 0.06 -0.32 7.96 -2.39 -0.02 -0.33 16 35 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 36 H 0.09 -0.99 7.96 -2.39 -0.02 -1.01 16 37 H 0.10 -0.44 7.96 -2.39 -0.02 -0.46 16 38 H 0.13 -1.68 7.96 -2.38 -0.02 -1.70 16 39 H 0.22 -3.01 8.06 -2.91 -0.02 -3.04 16 40 H 0.43 -5.86 8.83 -92.71 -0.82 -6.68 16 41 H 0.13 -1.53 7.66 -2.39 -0.02 -1.54 16 42 H 0.13 -1.49 7.66 -2.38 -0.02 -1.51 16 43 H 0.16 -1.73 6.30 -2.91 -0.02 -1.75 16 44 H 0.16 -1.41 8.06 -2.91 -0.02 -1.44 16 45 H 0.15 -0.73 8.06 -2.91 -0.02 -0.75 16 46 H 0.13 0.21 4.89 -2.91 -0.01 0.20 16 47 H 0.07 0.57 7.83 -2.38 -0.02 0.56 16 48 H 0.37 2.87 8.61 -74.06 -0.64 2.23 16 49 H 0.18 2.66 5.92 -2.91 -0.02 2.65 16 Total: 0.00 -29.65 410.71 5.57 -24.07 By element: Atomic # 1 Polarization: -19.21 SS G_CDS: 0.24 Total: -18.96 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: 7.91 Total: 15.48 kcal Atomic # 7 Polarization: -1.37 SS G_CDS: -2.93 Total: -4.30 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -2.30 Total: -16.18 kcal Atomic # 14 Polarization: -2.75 SS G_CDS: 2.64 Total: -0.11 kcal Total: -29.65 5.57 -24.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_2989392.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.099 kcal (2) G-P(sol) polarization free energy of solvation -29.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds