Wall clock time and date at job start Sun Mar 7 2021 10:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86303 * 109.47161 * 2 1 4 4 C 1.86299 * 109.47217 * 119.99499 * 2 1 3 5 5 C 1.86293 * 109.47364 * 239.99588 * 2 1 3 6 6 N 1.46505 * 109.46974 * 60.00146 * 5 2 1 7 7 C 1.35809 * 126.05363 * 90.00371 * 6 5 2 8 8 C 1.35753 * 107.56243 * 179.97438 * 7 6 5 9 9 N 1.40770 * 126.08077 * 179.97438 * 8 7 6 10 10 C 1.34779 * 119.99880 * 179.97438 * 9 8 7 11 11 O 1.21308 * 119.99988 * 359.97438 * 10 9 8 12 12 C 1.50700 * 119.99724 * 180.02562 * 10 9 8 13 13 O 1.42900 * 109.46872 * 179.97438 * 12 10 9 14 14 C 1.35904 * 116.99896 * 179.97438 * 13 12 10 15 15 C 1.38726 * 120.05579 * 359.73089 * 14 13 12 16 16 C 1.38147 * 119.94390 * 179.74335 * 15 14 13 17 17 C 1.38261 * 120.05479 * 0.50255 * 16 15 14 18 18 C 1.50700 * 119.94367 * 179.74577 * 17 16 15 19 19 O 1.42901 * 109.47316 * 245.02281 * 18 17 16 20 20 Si 1.86295 * 109.47300 * 5.02500 * 18 17 16 21 21 H 1.48508 * 109.46972 * 59.99658 * 20 18 17 22 22 H 1.48498 * 109.47352 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.46951 * 300.00061 * 20 18 17 24 24 C 1.38265 * 120.11041 * 359.77399 * 17 16 15 25 25 C 1.38141 * 120.05788 * 359.97089 * 24 17 16 26 26 C 1.40255 * 107.84084 * 359.97438 * 8 7 6 27 27 N 1.30830 * 108.33140 * 359.75546 * 26 8 7 28 28 H 1.09001 * 109.46570 * 60.00396 * 1 2 3 29 29 H 1.09001 * 109.47076 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47204 * 300.00331 * 1 2 3 31 31 H 1.09000 * 109.47332 * 59.99747 * 3 2 1 32 32 H 1.09002 * 109.47176 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.46801 * 299.99758 * 3 2 1 34 34 H 1.09001 * 109.47058 * 60.00032 * 4 2 1 35 35 H 1.09002 * 109.47782 * 180.02562 * 4 2 1 36 36 H 1.09000 * 109.47172 * 300.00189 * 4 2 1 37 37 H 1.09002 * 109.47236 * 180.02562 * 5 2 1 38 38 H 1.08998 * 109.47688 * 299.99834 * 5 2 1 39 39 H 1.08002 * 126.22167 * 359.93915 * 7 6 5 40 40 H 0.96996 * 120.00001 * 0.02562 * 9 8 7 41 41 H 1.09003 * 109.47022 * 299.99777 * 12 10 9 42 42 H 1.08999 * 109.47369 * 60.00024 * 12 10 9 43 43 H 1.08000 * 120.02978 * 359.97438 * 15 14 13 44 44 H 1.08002 * 119.97055 * 180.23029 * 16 15 14 45 45 H 1.09010 * 109.46703 * 125.02821 * 18 17 16 46 46 H 0.96700 * 113.99698 * 59.99717 * 19 18 17 47 47 H 1.08000 * 119.97190 * 179.97438 * 24 17 16 48 48 H 1.08003 * 120.03042 * 179.97438 * 25 24 17 49 49 H 1.08000 * 125.83430 * 179.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8781 1.5212 5 6 2.4841 -0.8783 -1.5210 6 7 1.9957 -0.1877 -2.7172 7 6 2.6259 0.8229 -3.3699 8 6 1.8455 1.1808 -4.4215 9 7 2.1293 2.1928 -5.3579 10 6 1.2637 2.4462 -6.3594 11 8 0.2402 1.8019 -6.4541 12 6 1.5678 3.5292 -7.3623 13 8 0.5081 3.6046 -8.3179 14 6 0.6270 4.5380 -9.2986 15 6 1.7380 5.3679 -9.3370 16 6 1.8590 6.3123 -10.3380 17 6 0.8691 6.4377 -11.2950 18 6 1.0010 7.4725 -12.3825 19 8 -0.0338 8.4478 -12.2401 20 14 2.6620 8.3055 -12.2490 21 1 3.7373 7.2920 -12.3970 22 1 2.7922 9.3249 -13.3210 23 1 2.7807 8.9631 -10.9229 24 6 -0.2419 5.6155 -11.2557 25 6 -0.3651 4.6661 -10.2598 26 6 0.7061 0.3630 -4.4090 27 7 0.7996 -0.4574 -3.3942 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 2.1207 2.2704 0.8899 32 1 3.5740 1.7565 0.0005 33 1 2.1207 2.2703 -0.8901 34 1 2.1207 -1.9058 1.5213 35 1 3.5740 -0.8777 1.5215 36 1 2.1207 -0.3642 2.4111 37 1 3.5741 -0.8787 -1.5207 38 1 2.1208 -1.9060 -1.5210 39 1 3.5750 1.2625 -3.1010 40 1 2.9482 2.7072 -5.2829 41 1 1.6619 4.4853 -6.8472 42 1 2.5022 3.2987 -7.8739 43 1 2.5094 5.2733 -8.5871 44 1 2.7255 6.9561 -10.3704 45 1 0.9137 6.9897 -13.3560 46 1 -0.0175 8.9179 -11.3953 47 1 -1.0140 5.7157 -12.0041 48 1 -1.2334 4.0244 -10.2293 49 1 -0.1076 0.4015 -5.1181 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_2989410.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:34:41 Heat of formation + Delta-G solvation = -27.439606 kcal Electronic energy + Delta-G solvation = -28868.427093 eV Core-core repulsion = 24728.851775 eV Total energy + Delta-G solvation = -4139.575318 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 363.157 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.37596 -41.45167 -40.41385 -38.98071 -37.11079 -35.95522 -33.74814 -32.42121 -31.74893 -30.93276 -29.60951 -29.20022 -28.38602 -28.32041 -26.84761 -26.13471 -24.15679 -23.07948 -22.36454 -21.97839 -21.11597 -19.49398 -18.70157 -18.17263 -17.90496 -17.48471 -16.99976 -16.82010 -16.45603 -16.32030 -15.99221 -15.61461 -15.50273 -15.23471 -15.05203 -14.89270 -14.42458 -14.19927 -14.16068 -14.04744 -13.89118 -13.83662 -13.71753 -13.56595 -13.43858 -13.41773 -13.21604 -13.14387 -13.02570 -12.25475 -12.22038 -12.14398 -12.05768 -12.01098 -11.77376 -11.53961 -11.39236 -10.96583 -10.85430 -10.80783 -10.34984 -10.04625 -10.03075 -9.22445 -8.65624 0.27961 0.31640 0.72868 1.21389 1.22657 1.25245 1.49270 1.55947 1.58719 1.69607 1.87143 1.96052 2.03971 2.12146 2.57232 2.60139 2.66570 3.48838 3.60342 3.72269 3.76156 3.85080 3.95832 3.99144 4.03561 4.09488 4.26319 4.29874 4.43580 4.55853 4.60809 4.67798 4.69561 4.72162 4.73760 4.74511 4.83013 4.84294 4.87043 4.88546 4.97456 5.06466 5.16918 5.25308 5.50373 5.51115 5.60381 5.65529 5.69974 5.74874 6.07390 6.26387 6.44098 6.67856 6.75189 7.12150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.477 4.477 2 Si 1.094 2.906 3 C -0.457 4.457 4 C -0.455 4.455 5 C -0.190 4.190 6 N -0.340 5.340 7 C 0.038 3.962 8 C -0.026 4.026 9 N -0.619 5.619 10 C 0.509 3.491 11 O -0.558 6.558 12 C 0.043 3.957 13 O -0.319 6.319 14 C 0.121 3.879 15 C -0.200 4.200 16 C -0.089 4.089 17 C -0.161 4.161 18 C -0.079 4.079 19 O -0.556 6.556 20 Si 0.984 3.016 21 H -0.254 1.254 22 H -0.280 1.280 23 H -0.246 1.246 24 C -0.056 4.056 25 C -0.165 4.165 26 C 0.020 3.980 27 N -0.321 5.321 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.134 0.866 38 H 0.101 0.899 39 H 0.225 0.775 40 H 0.433 0.567 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.164 0.836 44 H 0.141 0.859 45 H 0.120 0.880 46 H 0.388 0.612 47 H 0.139 0.861 48 H 0.128 0.872 49 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.668 3.723 4.941 12.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.581 4.581 2 Si 1.283 2.717 3 C -0.565 4.565 4 C -0.564 4.564 5 C -0.353 4.353 6 N -0.122 5.122 7 C -0.112 4.112 8 C -0.130 4.130 9 N -0.268 5.268 10 C 0.296 3.704 11 O -0.435 6.435 12 C -0.034 4.034 13 O -0.232 6.232 14 C 0.076 3.924 15 C -0.219 4.219 16 C -0.107 4.107 17 C -0.162 4.162 18 C -0.189 4.189 19 O -0.363 6.363 20 Si 0.809 3.191 21 H -0.178 1.178 22 H -0.206 1.206 23 H -0.169 1.169 24 C -0.074 4.074 25 C -0.184 4.184 26 C -0.165 4.165 27 N -0.145 5.145 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.152 0.848 38 H 0.120 0.880 39 H 0.242 0.758 40 H 0.273 0.727 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.182 0.818 44 H 0.159 0.841 45 H 0.137 0.863 46 H 0.237 0.763 47 H 0.156 0.844 48 H 0.146 0.854 49 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 9.918 2.285 5.055 11.364 hybrid contribution -0.212 0.486 -0.210 0.571 sum 9.706 2.771 4.845 11.196 Atomic orbital electron populations 1.26539 1.24635 1.03758 1.03145 0.78267 0.63847 0.66419 0.63123 1.26201 1.07515 1.18419 1.04370 1.26145 1.07372 1.08201 1.14669 1.27405 1.06733 1.05105 0.96092 1.48310 1.14780 1.26889 1.22247 1.22583 1.00761 0.94211 0.93619 1.17747 0.98374 0.99533 0.97344 1.42322 1.24320 1.34893 1.25229 1.20638 0.83155 0.84610 0.82005 1.90671 1.27778 1.50887 1.74166 1.22645 0.91602 0.99347 0.89837 1.86123 1.45413 1.53870 1.37779 1.19189 0.95290 0.89206 0.88694 1.21472 0.98971 0.98645 1.02774 1.21094 0.98364 0.97721 0.93528 1.20373 0.96358 1.00383 0.99051 1.25031 1.02927 0.90946 1.00019 1.86489 1.53315 1.53524 1.42971 0.85201 0.74571 0.79091 0.80274 1.17841 1.20603 1.16950 1.20940 0.97325 0.92438 0.96743 1.20661 0.99810 1.02115 0.95814 1.24291 0.99896 0.94867 0.97487 1.77400 1.03568 1.24173 1.09346 0.93593 0.92004 0.91266 0.91005 0.89114 0.91976 0.91011 0.89528 0.90740 0.84762 0.88021 0.75833 0.72692 0.85161 0.85223 0.81815 0.84129 0.86259 0.76272 0.84355 0.85445 0.80408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 -0.64 8.65 113.37 0.98 0.34 16 2 Si 1.09 -8.17 12.79 68.60 0.88 -7.29 16 3 C -0.46 3.35 8.65 113.37 0.98 4.33 16 4 C -0.46 3.58 8.65 113.37 0.98 4.56 16 5 C -0.19 1.09 5.59 127.77 0.71 1.80 16 6 N -0.34 -0.47 3.01 -182.93 -0.55 -1.03 16 7 C 0.04 -0.11 11.44 83.50 0.96 0.85 16 8 C -0.03 -0.08 6.90 37.62 0.26 0.18 16 9 N -0.62 1.91 5.47 -304.03 -1.66 0.25 16 10 C 0.51 1.46 7.88 87.66 0.69 2.15 16 11 O -0.56 -7.96 13.66 15.92 0.22 -7.75 16 12 C 0.04 -0.18 5.22 71.24 0.37 0.19 16 13 O -0.32 -1.70 9.67 -73.44 -0.71 -2.41 16 14 C 0.12 0.38 6.69 22.50 0.15 0.53 16 15 C -0.20 0.50 9.04 22.36 0.20 0.70 16 16 C -0.09 0.18 8.66 22.25 0.19 0.38 16 17 C -0.16 -0.01 5.35 -19.85 -0.11 -0.12 16 18 C -0.08 0.13 2.80 71.24 0.20 0.33 16 19 O -0.56 -0.18 12.83 -148.98 -1.91 -2.09 16 20 Si 0.98 -2.90 25.13 68.60 1.72 -1.18 16 21 H -0.25 0.61 7.11 99.48 0.71 1.32 16 22 H -0.28 -0.39 7.11 99.48 0.71 0.32 16 23 H -0.25 1.01 7.04 99.48 0.70 1.71 16 24 C -0.06 -0.13 9.68 22.25 0.22 0.09 16 25 C -0.17 -0.75 9.99 22.36 0.22 -0.53 16 26 C 0.02 0.22 10.84 85.33 0.92 1.14 16 27 N -0.32 -3.36 12.56 -56.77 -0.71 -4.08 16 28 H 0.04 0.30 7.96 -2.39 -0.02 0.28 16 29 H 0.06 0.16 7.96 -2.39 -0.02 0.14 16 30 H 0.07 0.04 7.96 -2.39 -0.02 0.02 16 31 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 32 H 0.09 -0.99 7.96 -2.39 -0.02 -1.01 16 33 H 0.06 -0.31 7.96 -2.38 -0.02 -0.33 16 34 H 0.07 -0.50 7.96 -2.39 -0.02 -0.52 16 35 H 0.09 -0.88 7.96 -2.39 -0.02 -0.90 16 36 H 0.07 -0.51 7.96 -2.39 -0.02 -0.53 16 37 H 0.13 -1.68 7.96 -2.39 -0.02 -1.70 16 38 H 0.10 -0.44 7.96 -2.39 -0.02 -0.46 16 39 H 0.23 -3.01 8.06 -2.91 -0.02 -3.03 16 40 H 0.43 -5.71 8.83 -92.71 -0.82 -6.53 16 41 H 0.13 -1.45 7.65 -2.39 -0.02 -1.47 16 42 H 0.13 -1.42 7.68 -2.39 -0.02 -1.44 16 43 H 0.16 -1.65 6.30 -2.91 -0.02 -1.67 16 44 H 0.14 -0.84 4.86 -2.91 -0.01 -0.85 16 45 H 0.12 -0.31 7.96 -2.38 -0.02 -0.33 16 46 H 0.39 -2.40 8.70 -74.06 -0.64 -3.05 16 47 H 0.14 0.10 8.06 -2.91 -0.02 0.08 16 48 H 0.13 0.64 8.06 -2.91 -0.02 0.62 16 49 H 0.18 2.77 5.92 -2.91 -0.02 2.75 16 Total: 0.00 -31.16 412.07 5.47 -25.69 By element: Atomic # 1 Polarization: -17.31 SS G_CDS: 0.27 Total: -17.04 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 7.94 Total: 16.92 kcal Atomic # 7 Polarization: -1.93 SS G_CDS: -2.93 Total: -4.85 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -2.40 Total: -12.24 kcal Atomic # 14 Polarization: -11.07 SS G_CDS: 2.60 Total: -8.47 kcal Total: -31.16 5.47 -25.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_2989410.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.750 kcal (2) G-P(sol) polarization free energy of solvation -31.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds