Wall clock time and date at job start Sun Mar 7 2021 10:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86300 * 109.46954 * 2 1 4 4 C 1.86299 * 109.47404 * 239.99726 * 2 1 3 5 5 C 1.86304 * 109.47402 * 119.99511 * 2 1 3 6 6 N 1.46506 * 109.46537 * 60.00072 * 5 2 1 7 7 C 1.35811 * 126.05378 * 90.00523 * 6 5 2 8 8 C 1.35747 * 107.56479 * 179.97438 * 7 6 5 9 9 N 1.40765 * 126.08040 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99962 * 179.97438 * 9 8 7 11 11 O 1.21301 * 120.00211 * 0.02562 * 10 9 8 12 12 C 1.50706 * 120.00146 * 180.02562 * 10 9 8 13 13 C 1.52999 * 109.46953 * 180.02562 * 12 10 9 14 14 O 1.42905 * 109.46728 * 180.02562 * 13 12 10 15 15 C 1.35896 * 117.00039 * 179.97438 * 14 13 12 16 16 C 1.38738 * 120.05353 * 359.72616 * 15 14 13 17 17 C 1.38148 * 119.94048 * 179.74738 * 16 15 14 18 18 C 1.38261 * 120.05800 * 0.50500 * 17 16 15 19 19 C 1.50703 * 119.94589 * 179.75166 * 18 17 16 20 20 O 1.42902 * 109.46840 * 245.01936 * 19 18 17 21 21 Si 1.86294 * 109.47009 * 5.01633 * 19 18 17 22 22 H 1.48499 * 109.47378 * 60.00493 * 21 19 18 23 23 H 1.48497 * 109.47077 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47291 * 300.00372 * 21 19 18 25 25 C 1.38262 * 120.11048 * 359.76434 * 18 17 16 26 26 C 1.38145 * 120.05942 * 359.97438 * 25 18 17 27 27 C 1.40253 * 107.83949 * 0.26113 * 8 7 6 28 28 N 1.30832 * 108.33451 * 359.55190 * 27 8 7 29 29 H 1.09003 * 109.47149 * 300.00154 * 1 2 3 30 30 H 1.08997 * 109.47423 * 60.00260 * 1 2 3 31 31 H 1.09006 * 109.47079 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47225 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.46948 * 299.99643 * 3 2 1 34 34 H 1.08998 * 109.47727 * 60.00174 * 3 2 1 35 35 H 1.08997 * 109.46828 * 300.00583 * 4 2 1 36 36 H 1.09007 * 109.46901 * 59.99480 * 4 2 1 37 37 H 1.08990 * 109.47496 * 179.97438 * 4 2 1 38 38 H 1.08991 * 109.47090 * 300.00659 * 5 2 1 39 39 H 1.08990 * 109.47196 * 180.02562 * 5 2 1 40 40 H 1.08001 * 126.21510 * 359.97438 * 7 6 5 41 41 H 0.96999 * 119.99994 * 0.02562 * 9 8 7 42 42 H 1.09000 * 109.46974 * 60.00144 * 12 10 9 43 43 H 1.09001 * 109.46547 * 300.00234 * 12 10 9 44 44 H 1.09000 * 109.47486 * 60.00062 * 13 12 10 45 45 H 1.09001 * 109.47362 * 299.99339 * 13 12 10 46 46 H 1.07995 * 120.02746 * 359.97438 * 16 15 14 47 47 H 1.08004 * 119.97067 * 180.22662 * 17 16 15 48 48 H 1.08995 * 109.47668 * 125.02330 * 19 18 17 49 49 H 0.96699 * 113.99859 * 59.99468 * 20 19 18 50 50 H 1.08009 * 119.97583 * 179.97438 * 25 18 17 51 51 H 1.08000 * 120.03441 * 179.97438 * 26 25 18 52 52 H 1.08003 * 125.83259 * 179.73910 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4841 -0.8783 -1.5211 5 6 2.4841 -0.8781 1.5212 6 7 1.9957 -2.2594 1.5212 7 6 2.6258 -3.3299 0.9723 8 6 1.8454 -4.4195 1.1880 9 7 2.1292 -5.7365 0.7798 10 6 1.2636 -6.7305 1.0610 11 8 0.2397 -6.4903 1.6654 12 6 1.5677 -8.1405 0.6244 13 6 0.4324 -9.0668 1.0649 14 8 0.7211 -10.4039 0.6515 15 6 -0.1934 -11.3583 0.9670 16 6 -1.3423 -11.0159 1.6653 17 6 -2.2729 -11.9871 1.9803 18 6 -2.0552 -13.3011 1.6094 19 6 -3.0694 -14.3595 1.9592 20 8 -2.4894 -15.2907 2.8750 21 14 -4.5561 -13.5588 2.7460 22 1 -5.1589 -12.5911 1.7945 23 1 -5.5553 -14.6017 3.0913 24 1 -4.1393 -12.8454 3.9800 25 6 -0.9083 -13.6458 0.9184 26 6 0.0228 -12.6775 0.5962 27 6 0.7029 -3.9987 1.8842 28 7 0.7966 -2.7098 2.0879 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.5739 1.7565 -0.0005 33 1 2.1206 2.2703 -0.8901 34 1 2.1207 2.2704 0.8900 35 1 2.1206 -1.9059 -1.5210 36 1 2.1206 -0.3645 -2.4111 37 1 3.5740 -0.8779 -1.5213 38 1 2.1207 -0.3643 2.4111 39 1 3.5740 -0.8777 1.5214 40 1 3.5752 -3.3168 0.4577 41 1 2.9482 -5.9286 0.2968 42 1 2.5021 -8.4683 1.0800 43 1 1.6619 -8.1724 -0.4610 44 1 -0.5018 -8.7388 0.6090 45 1 0.3379 -9.0350 2.1504 46 1 -1.5107 -9.9904 1.9591 47 1 -3.1692 -11.7204 2.5207 48 1 -3.3753 -14.8831 1.0536 49 1 -2.1935 -14.8934 3.7054 50 1 -0.7402 -14.6731 0.6301 51 1 0.9187 -12.9473 0.0568 52 1 -0.1133 -4.6312 2.2008 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608520_4549602.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:34:56 Heat of formation + Delta-G solvation = -39.370994 kcal Electronic energy + Delta-G solvation = -30576.979283 eV Core-core repulsion = 26281.348962 eV Total energy + Delta-G solvation = -4295.630321 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 377.173 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.31372 -41.30093 -40.53056 -39.11303 -37.14598 -35.92333 -33.89304 -33.25464 -32.02157 -31.44153 -30.34480 -29.70929 -28.60906 -28.47589 -27.29349 -26.40139 -25.50677 -23.68093 -22.71631 -22.19759 -21.88330 -20.96872 -19.44617 -18.50639 -18.33007 -17.61314 -17.53436 -17.08948 -16.76799 -16.52363 -16.41520 -16.04342 -15.85135 -15.66147 -15.16705 -15.04216 -14.79927 -14.42042 -14.39849 -14.34787 -14.34422 -14.31657 -14.00178 -13.90007 -13.82141 -13.58156 -13.54082 -13.44013 -13.28428 -13.19747 -12.95136 -12.86442 -12.21867 -12.19860 -12.07493 -12.00900 -11.78501 -11.68556 -11.49284 -11.38699 -11.07009 -10.97600 -10.94870 -10.36306 -10.04762 -9.97297 -9.14541 -8.62468 0.34853 0.37647 0.70448 1.19829 1.20957 1.32692 1.46063 1.51180 1.54865 1.63946 1.68272 1.93579 1.94823 2.14440 2.38241 2.48197 2.72678 3.43145 3.52688 3.65241 3.71351 3.78430 3.79357 3.86912 3.88394 3.99382 4.22143 4.27306 4.31727 4.40679 4.45435 4.53565 4.55684 4.55821 4.58437 4.58963 4.59765 4.63380 4.64543 4.71620 4.74015 4.77293 4.78078 5.00876 5.11855 5.23645 5.30129 5.34437 5.37134 5.54340 5.55405 5.76851 5.88111 5.99832 6.29373 6.38695 6.59161 6.77549 7.06016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.447 4.447 2 Si 1.019 2.981 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.169 4.169 6 N -0.343 5.343 7 C 0.016 3.984 8 C -0.008 4.008 9 N -0.640 5.640 10 C 0.521 3.479 11 O -0.527 6.527 12 C -0.137 4.137 13 C 0.073 3.927 14 O -0.316 6.316 15 C 0.138 3.862 16 C -0.202 4.202 17 C -0.084 4.084 18 C -0.159 4.159 19 C -0.075 4.075 20 O -0.540 6.540 21 Si 0.946 3.054 22 H -0.251 1.251 23 H -0.254 1.254 24 H -0.252 1.252 25 C -0.050 4.050 26 C -0.150 4.150 27 C 0.047 3.953 28 N -0.282 5.282 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.176 0.824 41 H 0.412 0.588 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.134 0.866 47 H 0.123 0.877 48 H 0.117 0.883 49 H 0.376 0.624 50 H 0.135 0.865 51 H 0.134 0.866 52 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.131 2.653 -2.923 6.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.555 4.555 2 Si 1.213 2.787 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.335 4.335 6 N -0.126 5.126 7 C -0.132 4.132 8 C -0.112 4.112 9 N -0.285 5.285 10 C 0.308 3.692 11 O -0.403 6.403 12 C -0.177 4.177 13 C -0.002 4.002 14 O -0.230 6.230 15 C 0.092 3.908 16 C -0.220 4.220 17 C -0.102 4.102 18 C -0.159 4.159 19 C -0.185 4.185 20 O -0.345 6.345 21 Si 0.770 3.230 22 H -0.174 1.174 23 H -0.178 1.178 24 H -0.176 1.176 25 C -0.069 4.069 26 C -0.169 4.169 27 C -0.139 4.139 28 N -0.105 5.105 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.123 0.877 39 H 0.117 0.883 40 H 0.193 0.807 41 H 0.247 0.753 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.152 0.848 47 H 0.140 0.860 48 H 0.135 0.865 49 H 0.223 0.777 50 H 0.153 0.847 51 H 0.152 0.848 52 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 3.232 3.888 -2.137 5.489 hybrid contribution 1.419 -0.408 -0.240 1.495 sum 4.650 3.480 -2.377 6.276 Atomic orbital electron populations 1.26072 1.20048 1.04904 1.04439 0.79385 0.68112 0.66425 0.64768 1.26096 1.06392 1.18204 1.05114 1.26125 1.06141 1.08270 1.15227 1.26965 1.04469 0.83201 1.18867 1.47993 1.15648 1.06405 1.42558 1.21883 1.00192 0.86514 1.04628 1.17658 0.98612 0.84751 1.10191 1.42701 1.24067 1.04714 1.57025 1.20300 0.83179 0.86392 0.79279 1.90639 1.25892 1.83625 1.40173 1.21411 1.01083 0.90523 1.04715 1.22425 0.98034 0.79106 1.00673 1.85968 1.44663 1.16841 1.75491 1.18982 0.88419 0.88894 0.94476 1.21253 0.95461 1.00854 1.04472 1.20855 0.98522 0.92461 0.98375 1.20200 0.98191 0.94399 1.03150 1.24880 1.01867 0.94063 0.97728 1.86511 1.82171 1.35597 1.30198 0.85733 0.77332 0.79379 0.80590 1.17421 1.17821 1.17632 1.20832 0.91948 0.99186 0.94888 1.20514 1.01726 0.89861 1.04802 1.24465 0.98902 0.91799 0.98767 1.77469 1.01215 1.12279 1.19498 0.91018 0.91198 0.91016 0.90958 0.90551 0.90842 0.91136 0.90715 0.91101 0.87666 0.88269 0.80660 0.75274 0.87204 0.87194 0.90725 0.90753 0.84832 0.85981 0.86531 0.77691 0.84728 0.84815 0.77927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.17 8.65 101.05 0.87 1.05 16 2 Si 1.02 -3.34 12.79 -169.99 -2.17 -5.51 16 3 C -0.45 1.39 8.65 101.05 0.87 2.26 16 4 C -0.45 1.16 8.65 101.05 0.87 2.04 16 5 C -0.17 0.36 5.59 59.85 0.33 0.70 16 6 N -0.34 -0.28 3.01 -9.18 -0.03 -0.31 16 7 C 0.02 -0.01 11.44 -16.68 -0.19 -0.20 16 8 C -0.01 -0.01 6.90 -83.89 -0.58 -0.59 16 9 N -0.64 0.86 5.47 -10.04 -0.05 0.80 16 10 C 0.52 0.00 7.80 -10.98 -0.09 -0.09 16 11 O -0.53 -1.83 13.14 5.54 0.07 -1.75 16 12 C -0.14 0.34 6.07 -27.88 -0.17 0.17 16 13 C 0.07 -0.02 4.03 37.16 0.15 0.13 16 14 O -0.32 -0.40 10.14 -19.41 -0.20 -0.59 16 15 C 0.14 0.25 6.69 -39.21 -0.26 -0.01 16 16 C -0.20 -0.30 9.04 -39.43 -0.36 -0.65 16 17 C -0.08 -0.10 8.66 -39.61 -0.34 -0.44 16 18 C -0.16 -0.15 5.35 -104.60 -0.56 -0.71 16 19 C -0.07 0.00 2.80 36.01 0.10 0.10 16 20 O -0.54 -0.36 12.83 -35.23 -0.45 -0.82 16 21 Si 0.95 0.00 25.13 -169.99 -4.27 -4.27 16 22 H -0.25 -0.18 7.11 56.52 0.40 0.23 16 23 H -0.25 -0.36 7.11 56.52 0.40 0.05 16 24 H -0.25 -0.06 7.04 56.52 0.40 0.34 16 25 C -0.05 -0.04 9.68 -39.61 -0.38 -0.43 16 26 C -0.15 -0.19 9.99 -39.43 -0.39 -0.58 16 27 C 0.05 0.17 10.84 -17.22 -0.19 -0.01 16 28 N -0.28 -1.09 12.56 30.70 0.39 -0.70 16 29 H 0.07 -0.01 7.96 -51.93 -0.41 -0.42 16 30 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 31 H 0.07 0.11 7.96 -51.93 -0.41 -0.30 16 32 H 0.07 -0.26 7.96 -51.93 -0.41 -0.67 16 33 H 0.08 -0.21 7.96 -51.92 -0.41 -0.62 16 34 H 0.07 -0.22 7.96 -51.93 -0.41 -0.63 16 35 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 36 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 37 H 0.07 -0.25 7.96 -51.93 -0.41 -0.66 16 38 H 0.10 -0.21 7.96 -51.93 -0.41 -0.62 16 39 H 0.10 -0.43 7.96 -51.93 -0.41 -0.84 16 40 H 0.18 -0.73 8.06 -52.49 -0.42 -1.15 16 41 H 0.41 -2.01 8.83 -40.82 -0.36 -2.37 16 42 H 0.11 -0.44 8.14 -51.93 -0.42 -0.86 16 43 H 0.11 -0.45 8.14 -51.93 -0.42 -0.87 16 44 H 0.07 0.00 7.63 -51.93 -0.40 -0.39 16 45 H 0.07 0.01 7.61 -51.93 -0.39 -0.39 16 46 H 0.13 0.05 6.30 -52.49 -0.33 -0.28 16 47 H 0.12 0.00 4.86 -52.48 -0.25 -0.25 16 48 H 0.12 -0.10 7.96 -51.93 -0.41 -0.52 16 49 H 0.38 -0.89 8.70 45.56 0.40 -0.49 16 50 H 0.13 -0.05 8.06 -52.48 -0.42 -0.47 16 51 H 0.13 -0.01 8.06 -52.49 -0.42 -0.43 16 52 H 0.20 0.88 5.92 -52.48 -0.31 0.57 16 LS Contribution 433.02 15.07 6.53 6.53 Total: 0.00 -9.51 433.02 -8.02 -17.54 By element: Atomic # 1 Polarization: -6.11 SS G_CDS: -7.53 Total: -13.64 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -0.30 Total: 2.74 kcal Atomic # 7 Polarization: -0.51 SS G_CDS: 0.30 Total: -0.21 kcal Atomic # 8 Polarization: -2.59 SS G_CDS: -0.58 Total: -3.16 kcal Atomic # 14 Polarization: -3.34 SS G_CDS: -6.45 Total: -9.78 kcal Total LS contribution 6.53 Total: 6.53 kcal Total: -9.51 -8.02 -17.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_4549602.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.834 kcal (2) G-P(sol) polarization free energy of solvation -9.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds