Wall clock time and date at job start Sun Mar 7 2021 10:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86300 * 109.46954 * 2 1 4 4 C 1.86299 * 109.47404 * 239.99726 * 2 1 3 5 5 C 1.86304 * 109.47402 * 119.99511 * 2 1 3 6 6 N 1.46506 * 109.46537 * 60.00072 * 5 2 1 7 7 C 1.35811 * 126.05378 * 90.00523 * 6 5 2 8 8 C 1.35747 * 107.56479 * 179.97438 * 7 6 5 9 9 N 1.40765 * 126.08040 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99962 * 179.97438 * 9 8 7 11 11 O 1.21301 * 120.00211 * 0.02562 * 10 9 8 12 12 C 1.50706 * 120.00146 * 180.02562 * 10 9 8 13 13 C 1.52999 * 109.46953 * 180.02562 * 12 10 9 14 14 O 1.42905 * 109.46728 * 180.02562 * 13 12 10 15 15 C 1.35896 * 117.00039 * 179.97438 * 14 13 12 16 16 C 1.38738 * 120.05353 * 359.72616 * 15 14 13 17 17 C 1.38148 * 119.94048 * 179.74738 * 16 15 14 18 18 C 1.38261 * 120.05800 * 0.50500 * 17 16 15 19 19 C 1.50703 * 119.94589 * 179.75166 * 18 17 16 20 20 O 1.42902 * 109.46840 * 245.01936 * 19 18 17 21 21 Si 1.86294 * 109.47009 * 5.01633 * 19 18 17 22 22 H 1.48499 * 109.47378 * 60.00493 * 21 19 18 23 23 H 1.48497 * 109.47077 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47291 * 300.00372 * 21 19 18 25 25 C 1.38262 * 120.11048 * 359.76434 * 18 17 16 26 26 C 1.38145 * 120.05942 * 359.97438 * 25 18 17 27 27 C 1.40253 * 107.83949 * 0.26113 * 8 7 6 28 28 N 1.30832 * 108.33451 * 359.55190 * 27 8 7 29 29 H 1.09003 * 109.47149 * 300.00154 * 1 2 3 30 30 H 1.08997 * 109.47423 * 60.00260 * 1 2 3 31 31 H 1.09006 * 109.47079 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47225 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.46948 * 299.99643 * 3 2 1 34 34 H 1.08998 * 109.47727 * 60.00174 * 3 2 1 35 35 H 1.08997 * 109.46828 * 300.00583 * 4 2 1 36 36 H 1.09007 * 109.46901 * 59.99480 * 4 2 1 37 37 H 1.08990 * 109.47496 * 179.97438 * 4 2 1 38 38 H 1.08991 * 109.47090 * 300.00659 * 5 2 1 39 39 H 1.08990 * 109.47196 * 180.02562 * 5 2 1 40 40 H 1.08001 * 126.21510 * 359.97438 * 7 6 5 41 41 H 0.96999 * 119.99994 * 0.02562 * 9 8 7 42 42 H 1.09000 * 109.46974 * 60.00144 * 12 10 9 43 43 H 1.09001 * 109.46547 * 300.00234 * 12 10 9 44 44 H 1.09000 * 109.47486 * 60.00062 * 13 12 10 45 45 H 1.09001 * 109.47362 * 299.99339 * 13 12 10 46 46 H 1.07995 * 120.02746 * 359.97438 * 16 15 14 47 47 H 1.08004 * 119.97067 * 180.22662 * 17 16 15 48 48 H 1.08995 * 109.47668 * 125.02330 * 19 18 17 49 49 H 0.96699 * 113.99859 * 59.99468 * 20 19 18 50 50 H 1.08009 * 119.97583 * 179.97438 * 25 18 17 51 51 H 1.08000 * 120.03441 * 179.97438 * 26 25 18 52 52 H 1.08003 * 125.83259 * 179.73910 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4841 -0.8783 -1.5211 5 6 2.4841 -0.8781 1.5212 6 7 1.9957 -2.2594 1.5212 7 6 2.6258 -3.3299 0.9723 8 6 1.8454 -4.4195 1.1880 9 7 2.1292 -5.7365 0.7798 10 6 1.2636 -6.7305 1.0610 11 8 0.2397 -6.4903 1.6654 12 6 1.5677 -8.1405 0.6244 13 6 0.4324 -9.0668 1.0649 14 8 0.7211 -10.4039 0.6515 15 6 -0.1934 -11.3583 0.9670 16 6 -1.3423 -11.0159 1.6653 17 6 -2.2729 -11.9871 1.9803 18 6 -2.0552 -13.3011 1.6094 19 6 -3.0694 -14.3595 1.9592 20 8 -2.4894 -15.2907 2.8750 21 14 -4.5561 -13.5588 2.7460 22 1 -5.1589 -12.5911 1.7945 23 1 -5.5553 -14.6017 3.0913 24 1 -4.1393 -12.8454 3.9800 25 6 -0.9083 -13.6458 0.9184 26 6 0.0228 -12.6775 0.5962 27 6 0.7029 -3.9987 1.8842 28 7 0.7966 -2.7098 2.0879 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.5739 1.7565 -0.0005 33 1 2.1206 2.2703 -0.8901 34 1 2.1207 2.2704 0.8900 35 1 2.1206 -1.9059 -1.5210 36 1 2.1206 -0.3645 -2.4111 37 1 3.5740 -0.8779 -1.5213 38 1 2.1207 -0.3643 2.4111 39 1 3.5740 -0.8777 1.5214 40 1 3.5752 -3.3168 0.4577 41 1 2.9482 -5.9286 0.2968 42 1 2.5021 -8.4683 1.0800 43 1 1.6619 -8.1724 -0.4610 44 1 -0.5018 -8.7388 0.6090 45 1 0.3379 -9.0350 2.1504 46 1 -1.5107 -9.9904 1.9591 47 1 -3.1692 -11.7204 2.5207 48 1 -3.3753 -14.8831 1.0536 49 1 -2.1935 -14.8934 3.7054 50 1 -0.7402 -14.6731 0.6301 51 1 0.9187 -12.9473 0.0568 52 1 -0.1133 -4.6312 2.2008 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_4549602.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:34:55 Heat of formation + Delta-G solvation = -36.506589 kcal Electronic energy + Delta-G solvation = -30576.855073 eV Core-core repulsion = 26281.348962 eV Total energy + Delta-G solvation = -4295.506111 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 377.173 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.34707 -41.34182 -40.55237 -39.14727 -37.17027 -35.93037 -33.88227 -33.23628 -32.06578 -31.48167 -30.33836 -29.52689 -28.39173 -28.34733 -27.24101 -26.41036 -25.50923 -23.72827 -22.75005 -22.21939 -21.87815 -20.98173 -19.48266 -18.48625 -18.33370 -17.59648 -17.50424 -17.12966 -16.75282 -16.53231 -16.43751 -16.05214 -15.85199 -15.69540 -15.20733 -15.09152 -14.79709 -14.43055 -14.39070 -14.23715 -14.19444 -14.16325 -13.89743 -13.82988 -13.81583 -13.57257 -13.42785 -13.22141 -13.15213 -13.03505 -12.90185 -12.81436 -12.26744 -12.16791 -12.14762 -12.02819 -11.77636 -11.76713 -11.54231 -11.37237 -11.00583 -10.86088 -10.81616 -10.38425 -10.04249 -10.03726 -9.21609 -8.62847 0.27343 0.30443 0.74239 1.18794 1.28096 1.34307 1.43037 1.50779 1.65008 1.75851 1.86405 1.89960 2.07503 2.12363 2.52305 2.56652 2.65784 3.52485 3.57910 3.69035 3.76573 3.82976 3.87293 3.91594 3.95687 4.06344 4.24406 4.27380 4.34213 4.45532 4.59380 4.61310 4.67693 4.68627 4.69580 4.69817 4.72933 4.73996 4.79801 4.82020 4.83106 4.86239 4.87654 4.96766 5.12297 5.18227 5.27811 5.49582 5.49766 5.59421 5.64784 5.72712 5.77179 6.08182 6.31568 6.43689 6.69300 6.71564 7.16009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.475 4.475 2 Si 1.093 2.907 3 C -0.455 4.455 4 C -0.458 4.458 5 C -0.189 4.189 6 N -0.341 5.341 7 C 0.032 3.968 8 C -0.026 4.026 9 N -0.625 5.625 10 C 0.516 3.484 11 O -0.570 6.570 12 C -0.125 4.125 13 C 0.072 3.928 14 O -0.319 6.319 15 C 0.124 3.876 16 C -0.212 4.212 17 C -0.095 4.095 18 C -0.162 4.162 19 C -0.069 4.069 20 O -0.552 6.552 21 Si 0.975 3.025 22 H -0.262 1.262 23 H -0.273 1.273 24 H -0.256 1.256 25 C -0.054 4.054 26 C -0.156 4.156 27 C 0.021 3.979 28 N -0.321 5.321 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.132 0.868 40 H 0.221 0.779 41 H 0.431 0.569 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.136 0.864 47 H 0.129 0.871 48 H 0.127 0.873 49 H 0.388 0.612 50 H 0.148 0.852 51 H 0.146 0.854 52 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.030 2.847 -4.048 9.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.579 4.579 2 Si 1.282 2.718 3 C -0.564 4.564 4 C -0.566 4.566 5 C -0.353 4.353 6 N -0.123 5.123 7 C -0.117 4.117 8 C -0.131 4.131 9 N -0.272 5.272 10 C 0.305 3.695 11 O -0.449 6.449 12 C -0.164 4.164 13 C -0.004 4.004 14 O -0.232 6.232 15 C 0.078 3.922 16 C -0.230 4.230 17 C -0.112 4.112 18 C -0.162 4.162 19 C -0.180 4.180 20 O -0.359 6.359 21 Si 0.801 3.199 22 H -0.186 1.186 23 H -0.199 1.199 24 H -0.180 1.180 25 C -0.072 4.072 26 C -0.175 4.175 27 C -0.164 4.164 28 N -0.145 5.145 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.120 0.880 39 H 0.150 0.850 40 H 0.237 0.763 41 H 0.270 0.730 42 H 0.150 0.850 43 H 0.150 0.850 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.154 0.846 47 H 0.146 0.854 48 H 0.144 0.856 49 H 0.237 0.763 50 H 0.165 0.835 51 H 0.164 0.836 52 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 6.127 4.083 -3.262 8.053 hybrid contribution 0.480 -0.395 0.122 0.633 sum 6.607 3.688 -3.140 8.192 Atomic orbital electron populations 1.26514 1.24432 1.03026 1.03962 0.78281 0.64001 0.65904 0.63576 1.26143 1.07343 1.17878 1.05016 1.26210 1.07454 1.07662 1.15229 1.27387 1.06638 0.81833 1.19453 1.48284 1.14722 1.07707 1.41613 1.22558 1.00843 0.85205 1.03080 1.17812 0.98278 0.86268 1.10697 1.42586 1.24514 1.03580 1.56538 1.20764 0.82673 0.87447 0.78622 1.90638 1.27777 1.84318 1.42171 1.21362 1.00843 0.88117 1.06096 1.22452 0.98821 0.78959 1.00168 1.85949 1.44584 1.17166 1.75543 1.19176 0.88700 0.89416 0.94888 1.21379 0.95734 1.01187 1.04741 1.21013 0.98809 0.92737 0.98681 1.20333 0.98483 0.94421 1.02973 1.24860 1.01285 0.93832 0.98056 1.86479 1.82223 1.36186 1.31016 0.85328 0.76551 0.78133 0.79934 1.18590 1.19853 1.18036 1.21026 0.91762 0.99773 0.94640 1.20726 1.02272 0.89679 1.04773 1.24327 0.99803 0.92022 1.00209 1.77388 1.03320 1.12578 1.21245 0.91934 0.91250 0.93523 0.89590 0.90721 0.90960 0.92049 0.90987 0.89240 0.87997 0.84952 0.76294 0.73011 0.84993 0.84986 0.91666 0.91663 0.84633 0.85352 0.85575 0.76314 0.83467 0.83632 0.79941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 -0.53 8.65 113.37 0.98 0.45 16 2 Si 1.09 -7.96 12.79 68.60 0.88 -7.08 16 3 C -0.46 3.50 8.65 113.37 0.98 4.48 16 4 C -0.46 3.13 8.65 113.37 0.98 4.11 16 5 C -0.19 1.04 5.59 127.77 0.71 1.75 16 6 N -0.34 -0.50 3.01 -182.94 -0.55 -1.05 16 7 C 0.03 -0.07 11.44 83.50 0.96 0.88 16 8 C -0.03 -0.07 6.90 37.62 0.26 0.19 16 9 N -0.63 1.88 5.47 -304.05 -1.66 0.21 16 10 C 0.52 0.38 7.80 87.66 0.68 1.06 16 11 O -0.57 -5.43 13.14 -3.09 -0.04 -5.47 16 12 C -0.12 0.68 6.07 29.85 0.18 0.86 16 13 C 0.07 0.03 4.03 71.98 0.29 0.32 16 14 O -0.32 -0.91 10.14 -92.39 -0.94 -1.85 16 15 C 0.12 0.54 6.69 22.51 0.15 0.69 16 16 C -0.21 -0.90 9.04 22.37 0.20 -0.70 16 17 C -0.09 -0.31 8.66 22.25 0.19 -0.12 16 18 C -0.16 -0.34 5.35 -19.85 -0.11 -0.44 16 19 C -0.07 0.00 2.80 71.24 0.20 0.20 16 20 O -0.55 -0.60 12.83 -148.98 -1.91 -2.51 16 21 Si 0.97 0.58 25.13 68.60 1.72 2.31 16 22 H -0.26 -0.60 7.11 99.48 0.71 0.11 16 23 H -0.27 -1.01 7.11 99.48 0.71 -0.30 16 24 H -0.26 -0.26 7.04 99.48 0.70 0.44 16 25 C -0.05 -0.09 9.68 22.25 0.22 0.13 16 26 C -0.16 -0.39 9.99 22.37 0.22 -0.17 16 27 C 0.02 0.21 10.84 85.33 0.92 1.14 16 28 N -0.32 -3.16 12.56 -56.77 -0.71 -3.88 16 29 H 0.06 0.14 7.96 -2.39 -0.02 0.12 16 30 H 0.07 0.02 7.96 -2.39 -0.02 0.00 16 31 H 0.05 0.28 7.96 -2.38 -0.02 0.27 16 32 H 0.09 -0.85 7.96 -2.39 -0.02 -0.87 16 33 H 0.07 -0.50 7.96 -2.38 -0.02 -0.52 16 34 H 0.07 -0.50 7.96 -2.39 -0.02 -0.52 16 35 H 0.06 -0.27 7.96 -2.39 -0.02 -0.29 16 36 H 0.07 -0.41 7.96 -2.38 -0.02 -0.43 16 37 H 0.09 -0.91 7.96 -2.39 -0.02 -0.93 16 38 H 0.10 -0.44 7.96 -2.39 -0.02 -0.46 16 39 H 0.13 -1.58 7.96 -2.39 -0.02 -1.60 16 40 H 0.22 -2.67 8.06 -2.91 -0.02 -2.69 16 41 H 0.43 -4.97 8.83 -92.71 -0.82 -5.79 16 42 H 0.13 -1.27 8.14 -2.39 -0.02 -1.29 16 43 H 0.13 -1.27 8.14 -2.39 -0.02 -1.29 16 44 H 0.07 0.14 7.63 -2.39 -0.02 0.12 16 45 H 0.07 0.13 7.61 -2.39 -0.02 0.11 16 46 H 0.14 0.40 6.30 -2.91 -0.02 0.38 16 47 H 0.13 0.14 4.86 -2.91 -0.01 0.13 16 48 H 0.13 -0.27 7.96 -2.39 -0.02 -0.29 16 49 H 0.39 -1.88 8.70 -74.06 -0.64 -2.52 16 50 H 0.15 -0.20 8.06 -2.91 -0.02 -0.22 16 51 H 0.15 -0.08 8.06 -2.91 -0.02 -0.10 16 52 H 0.18 2.40 5.92 -2.91 -0.02 2.38 16 Total: 0.00 -25.56 433.02 5.04 -20.52 By element: Atomic # 1 Polarization: -16.27 SS G_CDS: 0.23 Total: -16.04 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: 8.03 Total: 14.83 kcal Atomic # 7 Polarization: -1.78 SS G_CDS: -2.93 Total: -4.71 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -2.89 Total: -9.83 kcal Atomic # 14 Polarization: -7.37 SS G_CDS: 2.60 Total: -4.77 kcal Total: -25.56 5.04 -20.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_4549602.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.985 kcal (2) G-P(sol) polarization free energy of solvation -25.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds