Wall clock time and date at job start Sun Mar 7 2021 10:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86303 * 109.47161 * 2 1 4 4 C 1.86299 * 109.47217 * 119.99499 * 2 1 3 5 5 C 1.86293 * 109.47364 * 239.99588 * 2 1 3 6 6 N 1.46505 * 109.46974 * 60.00146 * 5 2 1 7 7 C 1.35809 * 126.05363 * 90.00371 * 6 5 2 8 8 C 1.35753 * 107.56243 * 179.97438 * 7 6 5 9 9 N 1.40770 * 126.08077 * 179.97438 * 8 7 6 10 10 C 1.34779 * 119.99880 * 179.97438 * 9 8 7 11 11 O 1.21308 * 119.99988 * 359.97438 * 10 9 8 12 12 C 1.50700 * 119.99724 * 180.02562 * 10 9 8 13 13 C 1.52997 * 109.46996 * 180.02562 * 12 10 9 14 14 O 1.42897 * 109.47409 * 180.02562 * 13 12 10 15 15 C 1.35898 * 117.00296 * 179.97438 * 14 13 12 16 16 C 1.38709 * 120.05524 * 359.72499 * 15 14 13 17 17 C 1.38163 * 119.94481 * 179.72604 * 16 15 14 18 18 C 1.38251 * 120.05662 * 0.56586 * 17 16 15 19 19 C 1.38284 * 120.10623 * 359.68616 * 18 17 16 20 20 C 1.50703 * 119.97107 * 180.02562 * 19 18 17 21 21 O 1.42904 * 109.46954 * 245.02056 * 20 19 18 22 22 Si 1.86298 * 109.47100 * 5.01737 * 20 19 18 23 23 H 1.48504 * 109.46971 * 60.00180 * 22 20 19 24 24 H 1.48503 * 109.47038 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47279 * 300.00119 * 22 20 19 26 26 C 1.38125 * 120.05939 * 0.03800 * 19 18 17 27 27 C 1.40255 * 107.84084 * 359.97438 * 8 7 6 28 28 N 1.30830 * 108.33140 * 359.75546 * 27 8 7 29 29 H 1.09001 * 109.46570 * 60.00396 * 1 2 3 30 30 H 1.09001 * 109.47076 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47204 * 300.00331 * 1 2 3 32 32 H 1.09000 * 109.47332 * 59.99747 * 3 2 1 33 33 H 1.09002 * 109.47176 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.46801 * 299.99758 * 3 2 1 35 35 H 1.09001 * 109.47058 * 60.00032 * 4 2 1 36 36 H 1.09002 * 109.47782 * 180.02562 * 4 2 1 37 37 H 1.09000 * 109.47172 * 300.00189 * 4 2 1 38 38 H 1.09002 * 109.47236 * 180.02562 * 5 2 1 39 39 H 1.08998 * 109.47688 * 299.99834 * 5 2 1 40 40 H 1.08002 * 126.22167 * 359.93915 * 7 6 5 41 41 H 0.96996 * 120.00001 * 0.02562 * 9 8 7 42 42 H 1.09003 * 109.47022 * 299.99777 * 12 10 9 43 43 H 1.08999 * 109.47369 * 60.00024 * 12 10 9 44 44 H 1.09003 * 109.46885 * 299.99655 * 13 12 10 45 45 H 1.09006 * 109.47469 * 59.99071 * 13 12 10 46 46 H 1.08002 * 120.02878 * 359.97438 * 16 15 14 47 47 H 1.08000 * 119.97607 * 180.27160 * 17 16 15 48 48 H 1.07994 * 119.95006 * 179.70269 * 18 17 16 49 49 H 1.09003 * 109.47452 * 125.02180 * 20 19 18 50 50 H 0.96699 * 114.00299 * 59.99283 * 21 20 19 51 51 H 1.07998 * 120.03021 * 179.97438 * 26 19 18 52 52 H 1.08000 * 125.83430 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8781 1.5212 5 6 2.4841 -0.8783 -1.5210 6 7 1.9957 -0.1877 -2.7172 7 6 2.6259 0.8229 -3.3699 8 6 1.8455 1.1808 -4.4215 9 7 2.1293 2.1928 -5.3579 10 6 1.2637 2.4462 -6.3594 11 8 0.2402 1.8019 -6.4541 12 6 1.5678 3.5292 -7.3623 13 6 0.4326 3.6109 -8.3847 14 8 0.7212 4.6374 -9.3360 15 6 -0.1933 4.8412 -10.3204 16 6 -1.3419 4.0654 -10.3730 17 6 -2.2729 4.2784 -11.3714 18 6 -2.0548 5.2559 -12.3244 19 6 -0.9080 6.0271 -12.2772 20 6 -0.6736 7.0923 -13.3172 21 8 0.4708 6.7489 -14.1012 22 14 -2.1678 7.2203 -14.4226 23 1 -3.3571 7.5770 -13.6080 24 1 -1.9366 8.2694 -15.4479 25 1 -2.4004 5.9160 -15.0935 26 6 0.0231 5.8220 -11.2777 27 6 0.7061 0.3630 -4.4090 28 7 0.7996 -0.4574 -3.3942 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 2.1207 2.2704 0.8899 33 1 3.5740 1.7565 0.0005 34 1 2.1207 2.2703 -0.8901 35 1 2.1207 -1.9058 1.5213 36 1 3.5740 -0.8777 1.5215 37 1 2.1207 -0.3642 2.4111 38 1 3.5741 -0.8787 -1.5207 39 1 2.1208 -1.9060 -1.5210 40 1 3.5750 1.2625 -3.1010 41 1 2.9482 2.7072 -5.2829 42 1 1.6619 4.4853 -6.8472 43 1 2.5022 3.2987 -7.8739 44 1 0.3382 2.6549 -8.8998 45 1 -0.5017 3.8415 -7.8728 46 1 -1.5103 3.2981 -9.6318 47 1 -3.1695 3.6775 -11.4103 48 1 -2.7814 5.4177 -13.1069 49 1 -0.5028 8.0496 -12.8249 50 1 0.3889 5.9065 -14.5688 51 1 0.9187 6.4243 -11.2415 52 1 -0.1076 0.4015 -5.1181 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608520_4549614.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:35:12 Heat of formation + Delta-G solvation = -39.119758 kcal Electronic energy + Delta-G solvation = -30571.622401 eV Core-core repulsion = 26276.002974 eV Total energy + Delta-G solvation = -4295.619426 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 377.173 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.30404 -41.29256 -40.52208 -39.07329 -37.23536 -35.91201 -33.87769 -33.19505 -32.41544 -30.96854 -30.24563 -29.69855 -28.60179 -28.47009 -27.29160 -26.83703 -25.33355 -23.64900 -22.87588 -22.17995 -21.72809 -20.95206 -19.26051 -18.50257 -18.12916 -17.62733 -17.51739 -17.14129 -16.89064 -16.64622 -16.51600 -16.15939 -15.84460 -15.62385 -15.13636 -14.98945 -14.80546 -14.56940 -14.38492 -14.33761 -14.31361 -14.27160 -13.99221 -13.88515 -13.81379 -13.57595 -13.43473 -13.27857 -13.23028 -13.19078 -12.97775 -12.86269 -12.36562 -12.18963 -12.15257 -11.88066 -11.79506 -11.67759 -11.48640 -11.37892 -11.06396 -10.96836 -10.93987 -10.44660 -10.04000 -9.86919 -9.19277 -8.61562 0.26833 0.45920 0.71336 1.15157 1.21994 1.33703 1.45547 1.51923 1.54434 1.64747 1.69360 1.91491 1.96531 2.15397 2.38846 2.49792 2.73078 3.44874 3.48617 3.66235 3.68474 3.78856 3.81087 3.87582 3.92954 4.08080 4.22232 4.25481 4.30750 4.36588 4.46060 4.54142 4.56354 4.56613 4.57578 4.59036 4.60422 4.62194 4.65348 4.72385 4.74600 4.74694 4.77798 5.02926 5.12908 5.30704 5.31533 5.37726 5.42781 5.49172 5.54853 5.73292 5.88992 6.00682 6.30590 6.41572 6.55777 6.78418 7.07154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.446 4.446 2 Si 1.019 2.981 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.169 4.169 6 N -0.343 5.343 7 C 0.016 3.984 8 C -0.008 4.008 9 N -0.640 5.640 10 C 0.522 3.478 11 O -0.528 6.528 12 C -0.137 4.137 13 C 0.074 3.926 14 O -0.316 6.316 15 C 0.133 3.867 16 C -0.202 4.202 17 C -0.073 4.073 18 C -0.164 4.164 19 C -0.083 4.083 20 C -0.081 4.081 21 O -0.537 6.537 22 Si 0.954 3.046 23 H -0.250 1.250 24 H -0.255 1.255 25 H -0.252 1.252 26 C -0.122 4.122 27 C 0.047 3.953 28 N -0.282 5.282 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.176 0.824 41 H 0.412 0.588 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.133 0.867 47 H 0.129 0.871 48 H 0.122 0.878 49 H 0.120 0.880 50 H 0.377 0.623 51 H 0.136 0.864 52 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.798 0.809 3.111 4.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.555 4.555 2 Si 1.213 2.787 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.335 4.335 6 N -0.126 5.126 7 C -0.132 4.132 8 C -0.112 4.112 9 N -0.285 5.285 10 C 0.309 3.691 11 O -0.404 6.404 12 C -0.177 4.177 13 C -0.002 4.002 14 O -0.230 6.230 15 C 0.087 3.913 16 C -0.221 4.221 17 C -0.091 4.091 18 C -0.182 4.182 19 C -0.083 4.083 20 C -0.192 4.192 21 O -0.342 6.342 22 Si 0.777 3.223 23 H -0.174 1.174 24 H -0.179 1.179 25 H -0.175 1.175 26 C -0.141 4.141 27 C -0.139 4.139 28 N -0.105 5.105 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.117 0.883 39 H 0.123 0.877 40 H 0.193 0.807 41 H 0.247 0.753 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.151 0.849 47 H 0.147 0.853 48 H 0.140 0.860 49 H 0.137 0.863 50 H 0.224 0.776 51 H 0.154 0.846 52 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 2.257 0.047 3.457 4.129 hybrid contribution 1.010 0.092 -0.199 1.033 sum 3.267 0.139 3.259 4.616 Atomic orbital electron populations 1.26070 1.20042 1.04833 1.04506 0.79387 0.68121 0.67110 0.64093 1.26126 1.06141 1.18599 1.04893 1.26096 1.06393 1.08338 1.14977 1.26968 1.04470 1.05179 0.96887 1.47992 1.15773 1.26774 1.22061 1.21885 1.00157 0.95723 0.95461 1.17663 0.98651 0.98885 0.96005 1.42704 1.24065 1.35251 1.26491 1.20302 0.83163 0.84344 0.81318 1.90640 1.25932 1.50055 1.73727 1.21410 1.01106 0.99262 0.95967 1.22412 0.97996 0.90660 0.89090 1.85966 1.44650 1.54711 1.37632 1.18953 0.88606 0.94899 0.88803 1.21395 0.95515 1.02810 1.02340 1.20910 0.98441 0.96536 0.93174 1.20977 0.98008 0.98323 1.00877 1.20087 0.94338 0.97385 0.96525 1.25028 0.99466 0.98967 0.95732 1.86525 1.39338 1.43750 1.64602 0.85618 0.76180 0.81269 0.79240 1.17354 1.17861 1.17549 1.20238 1.01030 0.98977 0.93850 1.24466 0.98943 0.93266 0.97254 1.77466 1.01402 1.23115 1.08498 0.91020 0.91017 0.91197 0.90717 0.91102 0.91130 0.90843 0.90956 0.90551 0.88276 0.87664 0.80658 0.75270 0.87194 0.87195 0.90791 0.90765 0.84910 0.85257 0.86047 0.86267 0.77596 0.84649 0.77923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.16 8.65 101.05 0.87 1.03 16 2 Si 1.02 -3.29 12.79 -169.99 -2.17 -5.46 16 3 C -0.45 1.14 8.65 101.05 0.87 2.02 16 4 C -0.45 1.37 8.65 101.05 0.87 2.24 16 5 C -0.17 0.35 5.59 59.85 0.33 0.69 16 6 N -0.34 -0.30 3.01 -9.17 -0.03 -0.33 16 7 C 0.02 -0.01 11.44 -16.68 -0.19 -0.20 16 8 C -0.01 -0.01 6.90 -83.88 -0.58 -0.59 16 9 N -0.64 0.78 5.47 -10.03 -0.05 0.73 16 10 C 0.52 0.06 7.80 -10.98 -0.09 -0.02 16 11 O -0.53 -1.88 13.14 5.53 0.07 -1.81 16 12 C -0.14 0.32 6.07 -27.88 -0.17 0.15 16 13 C 0.07 -0.01 4.03 37.16 0.15 0.14 16 14 O -0.32 -0.50 10.14 -19.42 -0.20 -0.69 16 15 C 0.13 0.28 6.69 -39.22 -0.26 0.02 16 16 C -0.20 -0.28 9.04 -39.43 -0.36 -0.64 16 17 C -0.07 -0.06 10.04 -39.60 -0.40 -0.46 16 18 C -0.16 -0.15 8.67 -39.56 -0.34 -0.49 16 19 C -0.08 -0.09 5.35 -104.64 -0.56 -0.65 16 20 C -0.08 0.01 2.80 36.01 0.10 0.11 16 21 O -0.54 -0.33 12.83 -35.23 -0.45 -0.78 16 22 Si 0.95 -0.38 25.14 -169.99 -4.27 -4.65 16 23 H -0.25 -0.06 7.11 56.52 0.40 0.34 16 24 H -0.25 -0.25 7.11 56.52 0.40 0.15 16 25 H -0.25 0.06 7.04 56.52 0.40 0.46 16 26 C -0.12 -0.23 9.62 -39.43 -0.38 -0.61 16 27 C 0.05 0.18 10.84 -17.22 -0.19 -0.01 16 28 N -0.28 -1.11 12.56 30.70 0.39 -0.72 16 29 H 0.07 0.11 7.96 -51.93 -0.41 -0.30 16 30 H 0.07 -0.01 7.96 -51.93 -0.41 -0.42 16 31 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 32 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 33 H 0.07 -0.24 7.96 -51.93 -0.41 -0.66 16 34 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 35 H 0.07 -0.21 7.96 -51.93 -0.41 -0.63 16 36 H 0.07 -0.25 7.96 -51.93 -0.41 -0.67 16 37 H 0.08 -0.21 7.96 -51.93 -0.41 -0.62 16 38 H 0.10 -0.42 7.96 -51.93 -0.41 -0.84 16 39 H 0.10 -0.20 7.96 -51.93 -0.41 -0.62 16 40 H 0.18 -0.71 8.06 -52.49 -0.42 -1.14 16 41 H 0.41 -1.96 8.83 -40.82 -0.36 -2.32 16 42 H 0.11 -0.42 8.14 -51.93 -0.42 -0.85 16 43 H 0.11 -0.42 8.14 -51.93 -0.42 -0.84 16 44 H 0.07 0.02 7.61 -51.93 -0.39 -0.38 16 45 H 0.07 0.01 7.63 -51.93 -0.40 -0.38 16 46 H 0.13 0.04 6.30 -52.49 -0.33 -0.29 16 47 H 0.13 -0.14 8.06 -52.49 -0.42 -0.56 16 48 H 0.12 -0.05 4.86 -52.49 -0.25 -0.31 16 49 H 0.12 -0.11 7.96 -51.93 -0.41 -0.53 16 50 H 0.38 -0.95 8.70 45.56 0.40 -0.56 16 51 H 0.14 0.20 8.06 -52.49 -0.42 -0.23 16 52 H 0.20 0.89 5.92 -52.49 -0.31 0.58 16 LS Contribution 433.03 15.07 6.53 6.53 Total: 0.00 -9.58 433.03 -8.02 -17.61 By element: Atomic # 1 Polarization: -5.62 SS G_CDS: -7.53 Total: -13.15 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -0.30 Total: 2.73 kcal Atomic # 7 Polarization: -0.62 SS G_CDS: 0.30 Total: -0.32 kcal Atomic # 8 Polarization: -2.71 SS G_CDS: -0.58 Total: -3.29 kcal Atomic # 14 Polarization: -3.66 SS G_CDS: -6.45 Total: -10.11 kcal Total LS contribution 6.53 Total: 6.53 kcal Total: -9.58 -8.02 -17.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_4549614.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.515 kcal (2) G-P(sol) polarization free energy of solvation -9.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds