Wall clock time and date at job start Sun Mar 7 2021 10:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86303 * 109.47161 * 2 1 4 4 C 1.86299 * 109.47217 * 119.99499 * 2 1 3 5 5 C 1.86293 * 109.47364 * 239.99588 * 2 1 3 6 6 N 1.46505 * 109.46974 * 60.00146 * 5 2 1 7 7 C 1.35809 * 126.05363 * 90.00371 * 6 5 2 8 8 C 1.35753 * 107.56243 * 179.97438 * 7 6 5 9 9 N 1.40770 * 126.08077 * 179.97438 * 8 7 6 10 10 C 1.34779 * 119.99880 * 179.97438 * 9 8 7 11 11 O 1.21308 * 119.99988 * 359.97438 * 10 9 8 12 12 C 1.50700 * 119.99724 * 180.02562 * 10 9 8 13 13 C 1.52997 * 109.46996 * 180.02562 * 12 10 9 14 14 O 1.42897 * 109.47409 * 180.02562 * 13 12 10 15 15 C 1.35898 * 117.00296 * 179.97438 * 14 13 12 16 16 C 1.38709 * 120.05524 * 359.72499 * 15 14 13 17 17 C 1.38163 * 119.94481 * 179.72604 * 16 15 14 18 18 C 1.38251 * 120.05662 * 0.56586 * 17 16 15 19 19 C 1.38284 * 120.10623 * 359.68616 * 18 17 16 20 20 C 1.50703 * 119.97107 * 180.02562 * 19 18 17 21 21 O 1.42904 * 109.46954 * 245.02056 * 20 19 18 22 22 Si 1.86298 * 109.47100 * 5.01737 * 20 19 18 23 23 H 1.48504 * 109.46971 * 60.00180 * 22 20 19 24 24 H 1.48503 * 109.47038 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47279 * 300.00119 * 22 20 19 26 26 C 1.38125 * 120.05939 * 0.03800 * 19 18 17 27 27 C 1.40255 * 107.84084 * 359.97438 * 8 7 6 28 28 N 1.30830 * 108.33140 * 359.75546 * 27 8 7 29 29 H 1.09001 * 109.46570 * 60.00396 * 1 2 3 30 30 H 1.09001 * 109.47076 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47204 * 300.00331 * 1 2 3 32 32 H 1.09000 * 109.47332 * 59.99747 * 3 2 1 33 33 H 1.09002 * 109.47176 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.46801 * 299.99758 * 3 2 1 35 35 H 1.09001 * 109.47058 * 60.00032 * 4 2 1 36 36 H 1.09002 * 109.47782 * 180.02562 * 4 2 1 37 37 H 1.09000 * 109.47172 * 300.00189 * 4 2 1 38 38 H 1.09002 * 109.47236 * 180.02562 * 5 2 1 39 39 H 1.08998 * 109.47688 * 299.99834 * 5 2 1 40 40 H 1.08002 * 126.22167 * 359.93915 * 7 6 5 41 41 H 0.96996 * 120.00001 * 0.02562 * 9 8 7 42 42 H 1.09003 * 109.47022 * 299.99777 * 12 10 9 43 43 H 1.08999 * 109.47369 * 60.00024 * 12 10 9 44 44 H 1.09003 * 109.46885 * 299.99655 * 13 12 10 45 45 H 1.09006 * 109.47469 * 59.99071 * 13 12 10 46 46 H 1.08002 * 120.02878 * 359.97438 * 16 15 14 47 47 H 1.08000 * 119.97607 * 180.27160 * 17 16 15 48 48 H 1.07994 * 119.95006 * 179.70269 * 18 17 16 49 49 H 1.09003 * 109.47452 * 125.02180 * 20 19 18 50 50 H 0.96699 * 114.00299 * 59.99283 * 21 20 19 51 51 H 1.07998 * 120.03021 * 179.97438 * 26 19 18 52 52 H 1.08000 * 125.83430 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8781 1.5212 5 6 2.4841 -0.8783 -1.5210 6 7 1.9957 -0.1877 -2.7172 7 6 2.6259 0.8229 -3.3699 8 6 1.8455 1.1808 -4.4215 9 7 2.1293 2.1928 -5.3579 10 6 1.2637 2.4462 -6.3594 11 8 0.2402 1.8019 -6.4541 12 6 1.5678 3.5292 -7.3623 13 6 0.4326 3.6109 -8.3847 14 8 0.7212 4.6374 -9.3360 15 6 -0.1933 4.8412 -10.3204 16 6 -1.3419 4.0654 -10.3730 17 6 -2.2729 4.2784 -11.3714 18 6 -2.0548 5.2559 -12.3244 19 6 -0.9080 6.0271 -12.2772 20 6 -0.6736 7.0923 -13.3172 21 8 0.4708 6.7489 -14.1012 22 14 -2.1678 7.2203 -14.4226 23 1 -3.3571 7.5770 -13.6080 24 1 -1.9366 8.2694 -15.4479 25 1 -2.4004 5.9160 -15.0935 26 6 0.0231 5.8220 -11.2777 27 6 0.7061 0.3630 -4.4090 28 7 0.7996 -0.4574 -3.3942 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 2.1207 2.2704 0.8899 33 1 3.5740 1.7565 0.0005 34 1 2.1207 2.2703 -0.8901 35 1 2.1207 -1.9058 1.5213 36 1 3.5740 -0.8777 1.5215 37 1 2.1207 -0.3642 2.4111 38 1 3.5741 -0.8787 -1.5207 39 1 2.1208 -1.9060 -1.5210 40 1 3.5750 1.2625 -3.1010 41 1 2.9482 2.7072 -5.2829 42 1 1.6619 4.4853 -6.8472 43 1 2.5022 3.2987 -7.8739 44 1 0.3382 2.6549 -8.8998 45 1 -0.5017 3.8415 -7.8728 46 1 -1.5103 3.2981 -9.6318 47 1 -3.1695 3.6775 -11.4103 48 1 -2.7814 5.4177 -13.1069 49 1 -0.5028 8.0496 -12.8249 50 1 0.3889 5.9065 -14.5688 51 1 0.9187 6.4243 -11.2415 52 1 -0.1076 0.4015 -5.1181 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_4549614.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:35:11 Heat of formation + Delta-G solvation = -36.326650 kcal Electronic energy + Delta-G solvation = -30571.501282 eV Core-core repulsion = 26276.002974 eV Total energy + Delta-G solvation = -4295.498308 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 377.173 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.34469 -41.34693 -40.55323 -39.11520 -37.25710 -35.92815 -33.87543 -33.17907 -32.46830 -31.02312 -30.24483 -29.52070 -28.38875 -28.34363 -27.26213 -26.83482 -25.33133 -23.71154 -22.92419 -22.18255 -21.74907 -20.97418 -19.29893 -18.48471 -18.13196 -17.63827 -17.50475 -17.18038 -16.90535 -16.65368 -16.53388 -16.15608 -15.85441 -15.64605 -15.18143 -15.01088 -14.81434 -14.58132 -14.32618 -14.23263 -14.18962 -14.16039 -13.88865 -13.82956 -13.81347 -13.42764 -13.22102 -13.21705 -13.14825 -13.03232 -12.95491 -12.87371 -12.37115 -12.16539 -12.14562 -11.91421 -11.79508 -11.76537 -11.51152 -11.37030 -11.00652 -10.85813 -10.81324 -10.45088 -10.03570 -9.94060 -9.27992 -8.62684 0.19230 0.37319 0.74413 1.17422 1.28275 1.34525 1.48148 1.55479 1.65286 1.75839 1.86586 1.93446 2.07794 2.12680 2.52444 2.56904 2.65395 3.51678 3.55516 3.68880 3.76112 3.84034 3.90392 3.91651 4.02679 4.08473 4.19557 4.27653 4.29630 4.41706 4.56274 4.60820 4.65793 4.68058 4.69704 4.69935 4.73005 4.74270 4.78416 4.82254 4.83258 4.86450 4.87868 4.97728 5.12475 5.24665 5.35918 5.42128 5.50108 5.59636 5.64999 5.68679 5.77418 6.08324 6.32879 6.43715 6.69519 6.70111 7.15882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.475 4.475 2 Si 1.093 2.907 3 C -0.458 4.458 4 C -0.455 4.455 5 C -0.190 4.190 6 N -0.341 5.341 7 C 0.032 3.968 8 C -0.026 4.026 9 N -0.625 5.625 10 C 0.517 3.483 11 O -0.570 6.570 12 C -0.125 4.125 13 C 0.073 3.927 14 O -0.321 6.321 15 C 0.119 3.881 16 C -0.212 4.212 17 C -0.078 4.078 18 C -0.171 4.171 19 C -0.084 4.084 20 C -0.082 4.082 21 O -0.551 6.551 22 Si 0.989 3.011 23 H -0.258 1.258 24 H -0.274 1.274 25 H -0.251 1.251 26 C -0.135 4.135 27 C 0.022 3.978 28 N -0.321 5.321 29 H 0.045 0.955 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.132 0.868 39 H 0.102 0.898 40 H 0.220 0.780 41 H 0.431 0.569 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.137 0.863 47 H 0.147 0.853 48 H 0.135 0.865 49 H 0.126 0.874 50 H 0.389 0.611 51 H 0.136 0.864 52 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.161 1.315 3.842 7.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.579 4.579 2 Si 1.282 2.718 3 C -0.566 4.566 4 C -0.564 4.564 5 C -0.353 4.353 6 N -0.123 5.123 7 C -0.117 4.117 8 C -0.131 4.131 9 N -0.272 5.272 10 C 0.306 3.694 11 O -0.449 6.449 12 C -0.165 4.165 13 C -0.003 4.003 14 O -0.235 6.235 15 C 0.074 3.926 16 C -0.230 4.230 17 C -0.096 4.096 18 C -0.189 4.189 19 C -0.084 4.084 20 C -0.192 4.192 21 O -0.358 6.358 22 Si 0.813 3.187 23 H -0.182 1.182 24 H -0.200 1.200 25 H -0.175 1.175 26 C -0.154 4.154 27 C -0.163 4.163 28 N -0.145 5.145 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.150 0.850 39 H 0.120 0.880 40 H 0.237 0.763 41 H 0.270 0.730 42 H 0.149 0.851 43 H 0.149 0.851 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.155 0.845 47 H 0.165 0.835 48 H 0.152 0.848 49 H 0.144 0.856 50 H 0.238 0.762 51 H 0.154 0.846 52 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 4.613 0.548 4.191 6.256 hybrid contribution 0.250 -0.101 -0.370 0.458 sum 4.863 0.447 3.820 6.200 Atomic orbital electron populations 1.26507 1.24385 1.03816 1.03187 0.78289 0.64044 0.66326 0.63158 1.26214 1.07447 1.18572 1.04334 1.26142 1.07337 1.08231 1.14661 1.27390 1.06637 1.05116 0.96176 1.48283 1.14849 1.26909 1.22268 1.22557 1.00800 0.94408 0.93936 1.17817 0.98349 0.99583 0.97319 1.42588 1.24500 1.34634 1.25503 1.20741 0.82670 0.84338 0.81690 1.90637 1.27786 1.51655 1.74778 1.21362 1.00862 0.99298 0.94962 1.22443 0.98796 0.89888 0.89143 1.85945 1.44682 1.55109 1.37747 1.19142 0.89023 0.95280 0.89162 1.21537 0.95656 1.03028 1.02806 1.21191 0.98907 0.96659 0.92818 1.21191 0.98247 0.98235 1.01233 1.20244 0.94189 0.97531 0.96470 1.25112 0.99578 0.98899 0.95569 1.86491 1.39770 1.44773 1.64807 0.85126 0.75253 0.80356 0.77999 1.18187 1.19972 1.17462 1.20356 1.01438 0.99263 0.94296 1.24330 0.99838 0.94684 0.97481 1.77385 1.03496 1.24244 1.09400 0.93524 0.91915 0.91240 0.90984 0.89257 0.92053 0.90945 0.89599 0.90715 0.84970 0.87971 0.76318 0.73030 0.85054 0.85085 0.91635 0.91602 0.84546 0.83496 0.84790 0.85645 0.76178 0.84637 0.79899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 -0.53 8.65 113.37 0.98 0.45 16 2 Si 1.09 -7.86 12.79 68.60 0.88 -6.98 16 3 C -0.46 3.07 8.65 113.37 0.98 4.05 16 4 C -0.45 3.47 8.65 113.37 0.98 4.45 16 5 C -0.19 1.02 5.59 127.77 0.71 1.74 16 6 N -0.34 -0.54 3.01 -182.93 -0.55 -1.09 16 7 C 0.03 -0.07 11.44 83.50 0.96 0.89 16 8 C -0.03 -0.08 6.90 37.62 0.26 0.18 16 9 N -0.63 1.70 5.47 -304.03 -1.66 0.04 16 10 C 0.52 0.53 7.80 87.66 0.68 1.21 16 11 O -0.57 -5.50 13.14 -3.12 -0.04 -5.54 16 12 C -0.13 0.61 6.07 29.85 0.18 0.79 16 13 C 0.07 0.06 4.03 71.98 0.29 0.35 16 14 O -0.32 -1.25 10.14 -92.40 -0.94 -2.19 16 15 C 0.12 0.63 6.69 22.51 0.15 0.78 16 16 C -0.21 -0.83 9.04 22.36 0.20 -0.63 16 17 C -0.08 -0.16 10.04 22.26 0.22 0.06 16 18 C -0.17 -0.32 8.67 22.28 0.19 -0.12 16 19 C -0.08 -0.21 5.35 -19.88 -0.11 -0.31 16 20 C -0.08 0.01 2.80 71.24 0.20 0.21 16 21 O -0.55 -0.69 12.83 -148.98 -1.91 -2.60 16 22 Si 0.99 -0.89 25.14 68.60 1.72 0.83 16 23 H -0.26 -0.08 7.11 99.48 0.71 0.62 16 24 H -0.27 -0.65 7.11 99.48 0.71 0.06 16 25 H -0.25 0.29 7.04 99.48 0.70 0.99 16 26 C -0.13 -0.61 9.62 22.37 0.22 -0.40 16 27 C 0.02 0.22 10.84 85.33 0.92 1.14 16 28 N -0.32 -3.18 12.56 -56.77 -0.71 -3.90 16 29 H 0.05 0.28 7.96 -2.39 -0.02 0.27 16 30 H 0.06 0.14 7.96 -2.39 -0.02 0.12 16 31 H 0.07 0.02 7.96 -2.39 -0.02 0.00 16 32 H 0.07 -0.41 7.96 -2.39 -0.02 -0.42 16 33 H 0.09 -0.90 7.96 -2.39 -0.02 -0.91 16 34 H 0.06 -0.26 7.96 -2.38 -0.02 -0.28 16 35 H 0.07 -0.50 7.96 -2.39 -0.02 -0.52 16 36 H 0.08 -0.84 7.96 -2.39 -0.02 -0.86 16 37 H 0.07 -0.50 7.96 -2.39 -0.02 -0.52 16 38 H 0.13 -1.57 7.96 -2.39 -0.02 -1.59 16 39 H 0.10 -0.43 7.96 -2.39 -0.02 -0.45 16 40 H 0.22 -2.61 8.06 -2.91 -0.02 -2.64 16 41 H 0.43 -4.81 8.83 -92.71 -0.82 -5.63 16 42 H 0.13 -1.17 8.14 -2.39 -0.02 -1.19 16 43 H 0.13 -1.16 8.14 -2.39 -0.02 -1.18 16 44 H 0.07 0.15 7.61 -2.39 -0.02 0.14 16 45 H 0.07 0.15 7.63 -2.38 -0.02 0.13 16 46 H 0.14 0.33 6.30 -2.91 -0.02 0.31 16 47 H 0.15 -0.33 8.06 -2.91 -0.02 -0.35 16 48 H 0.13 -0.17 4.86 -2.91 -0.01 -0.19 16 49 H 0.13 -0.22 7.96 -2.39 -0.02 -0.24 16 50 H 0.39 -1.98 8.70 -74.06 -0.64 -2.62 16 51 H 0.14 0.51 8.06 -2.91 -0.02 0.49 16 52 H 0.18 2.40 5.92 -2.91 -0.02 2.39 16 Total: 0.00 -25.69 433.03 5.04 -20.65 By element: Atomic # 1 Polarization: -14.29 SS G_CDS: 0.23 Total: -14.06 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 8.03 Total: 14.84 kcal Atomic # 7 Polarization: -2.02 SS G_CDS: -2.93 Total: -4.95 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -2.89 Total: -10.33 kcal Atomic # 14 Polarization: -8.75 SS G_CDS: 2.60 Total: -6.15 kcal Total: -25.69 5.04 -20.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_4549614.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.680 kcal (2) G-P(sol) polarization free energy of solvation -25.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds