Wall clock time and date at job start Sun Mar 7 2021 10:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86298 * 109.47187 * 2 1 4 4 C 1.86297 * 109.46848 * 240.00180 * 2 1 3 5 5 C 1.86300 * 109.47279 * 119.99990 * 2 1 3 6 6 N 1.46504 * 109.46684 * 59.99777 * 5 2 1 7 7 C 1.35815 * 126.05271 * 90.00691 * 6 5 2 8 8 C 1.35755 * 107.56248 * 179.97438 * 7 6 5 9 9 N 1.40764 * 126.07665 * 179.97438 * 8 7 6 10 10 C 1.34779 * 119.99721 * 180.02562 * 9 8 7 11 11 O 1.21308 * 119.99956 * 359.97438 * 10 9 8 12 12 C 1.50698 * 120.00201 * 180.02562 * 10 9 8 13 13 C 1.52992 * 109.47592 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47482 * 179.97438 * 13 12 10 15 15 O 1.42898 * 109.47319 * 180.02562 * 14 13 12 16 16 C 1.35900 * 117.00172 * 179.97438 * 15 14 13 17 17 C 1.38710 * 120.05544 * 359.72769 * 16 15 14 18 18 C 1.38159 * 119.94311 * 179.72143 * 17 16 15 19 19 C 1.38250 * 120.05742 * 0.57011 * 18 17 16 20 20 C 1.38280 * 120.10833 * 359.68104 * 19 18 17 21 21 C 1.50697 * 119.97205 * 180.02562 * 20 19 18 22 22 O 1.42902 * 109.47393 * 245.02079 * 21 20 19 23 23 Si 1.86306 * 109.47148 * 5.02162 * 21 20 19 24 24 H 1.48504 * 109.46673 * 59.99962 * 23 21 20 25 25 H 1.48495 * 109.47180 * 179.97438 * 23 21 20 26 26 H 1.48491 * 109.46932 * 300.00295 * 23 21 20 27 27 C 1.38129 * 120.05716 * 0.04353 * 20 19 18 28 28 C 1.40252 * 107.83898 * 0.25848 * 8 7 6 29 29 N 1.30828 * 108.33628 * 359.55347 * 28 8 7 30 30 H 1.09007 * 109.46787 * 300.00177 * 1 2 3 31 31 H 1.08999 * 109.47149 * 59.99870 * 1 2 3 32 32 H 1.09000 * 109.47162 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47319 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47182 * 300.00109 * 3 2 1 35 35 H 1.09004 * 109.46908 * 60.00203 * 3 2 1 36 36 H 1.09000 * 109.47149 * 299.99898 * 4 2 1 37 37 H 1.08999 * 109.47287 * 60.00034 * 4 2 1 38 38 H 1.09009 * 109.47021 * 180.02562 * 4 2 1 39 39 H 1.09004 * 109.46879 * 300.00402 * 5 2 1 40 40 H 1.08993 * 109.47546 * 179.97438 * 5 2 1 41 41 H 1.07998 * 126.21450 * 359.97438 * 7 6 5 42 42 H 0.96992 * 119.99943 * 359.97438 * 9 8 7 43 43 H 1.09002 * 109.47210 * 59.99599 * 12 10 9 44 44 H 1.09001 * 109.46665 * 299.99857 * 12 10 9 45 45 H 1.09002 * 109.47103 * 59.99616 * 13 12 10 46 46 H 1.08998 * 109.46862 * 300.00428 * 13 12 10 47 47 H 1.09002 * 109.47153 * 59.99783 * 14 13 12 48 48 H 1.09001 * 109.46832 * 299.99974 * 14 13 12 49 49 H 1.08006 * 120.02494 * 359.97438 * 17 16 15 50 50 H 1.08006 * 119.97038 * 180.27439 * 18 17 16 51 51 H 1.08000 * 119.94133 * 179.70045 * 19 18 17 52 52 H 1.09005 * 109.47122 * 125.02014 * 21 20 19 53 53 H 0.96696 * 113.99487 * 59.99932 * 22 21 20 54 54 H 1.07998 * 120.02418 * 180.02562 * 27 20 19 55 55 H 1.08001 * 125.83317 * 179.73973 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4841 -0.8782 1.5211 6 7 1.9957 -2.2594 1.5211 7 6 2.6258 -3.3300 0.9721 8 6 1.8453 -4.4197 1.1878 9 7 2.1291 -5.7365 0.7795 10 6 1.2629 -6.7304 1.0597 11 8 0.2390 -6.4901 1.6642 12 6 1.5670 -8.1404 0.6232 13 6 0.4318 -9.0667 1.0635 14 6 0.7402 -10.4980 0.6197 15 8 -0.3205 -11.3631 1.0305 16 6 -0.2020 -12.6789 0.7118 17 6 0.9093 -13.1271 0.0131 18 6 1.0301 -14.4662 -0.3046 19 6 0.0390 -15.3573 0.0628 20 6 -1.0723 -14.9120 0.7549 21 6 -2.1506 -15.8861 1.1544 22 8 -3.3609 -15.5660 0.4653 23 14 -1.6211 -17.6158 0.7088 24 1 -0.3633 -17.9483 1.4250 25 1 -2.6833 -18.5757 1.1031 26 1 -1.3941 -17.7020 -0.7561 27 6 -1.1951 -13.5752 1.0799 28 6 0.7028 -3.9988 1.8840 29 7 0.7966 -2.7099 2.0878 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.5740 1.7565 0.0005 34 1 2.1207 2.2703 -0.8900 35 1 2.1207 2.2702 0.8900 36 1 2.1206 -1.9058 -1.5212 37 1 2.1206 -0.3643 -2.4111 38 1 3.5740 -0.8786 -1.5210 39 1 2.1207 -0.3644 2.4111 40 1 3.5740 -0.8786 1.5209 41 1 3.5752 -3.3169 0.4575 42 1 2.9476 -5.9285 0.2959 43 1 2.5009 -8.4686 1.0794 44 1 1.6620 -8.1721 -0.4622 45 1 -0.5024 -8.7386 0.6077 46 1 0.3372 -9.0348 2.1489 47 1 1.6744 -10.8263 1.0753 48 1 0.8344 -10.5295 -0.4657 49 1 1.6814 -12.4306 -0.2786 50 1 1.8973 -14.8165 -0.8448 51 1 0.1330 -16.4029 -0.1908 52 1 -2.3171 -15.8227 2.2298 53 1 -3.2862 -15.6023 -0.4981 54 1 -2.0631 -13.2281 1.6208 55 1 -0.1134 -4.6312 2.2007 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_4549616.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:35:28 Heat of formation + Delta-G solvation = -43.454568 kcal Electronic energy + Delta-G solvation = -32099.671566 eV Core-core repulsion = 27648.326549 eV Total energy + Delta-G solvation = -4451.345017 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 391.189 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.31377 -41.26777 -40.54110 -39.17070 -37.28846 -35.90332 -34.91381 -33.63441 -32.44840 -31.32388 -30.50765 -29.54610 -28.46700 -28.38973 -28.26190 -26.95529 -26.55246 -23.92470 -23.65682 -22.61272 -21.99853 -21.69555 -20.92022 -19.17650 -18.42168 -17.95424 -17.91968 -17.45472 -17.19023 -16.84154 -16.68003 -16.61059 -16.20134 -16.03524 -15.61742 -15.21661 -15.04115 -14.93942 -14.68909 -14.46791 -14.22194 -14.18604 -14.15819 -13.99220 -13.84242 -13.81326 -13.43325 -13.31077 -13.22489 -13.21858 -13.14425 -13.05903 -13.03165 -12.73189 -12.32970 -12.25031 -12.12737 -12.10534 -11.86403 -11.75559 -11.57461 -11.49044 -11.35011 -10.89669 -10.85908 -10.81134 -10.45350 -10.02572 -9.91350 -9.23551 -8.59770 0.22586 0.40668 0.76422 1.16816 1.33927 1.39427 1.48038 1.55012 1.66475 1.86436 1.89966 1.97245 2.11620 2.16078 2.44090 2.56917 2.68777 3.52484 3.63407 3.70488 3.77334 3.85915 3.92375 3.94964 4.02132 4.10784 4.22332 4.23030 4.29113 4.38731 4.44971 4.46847 4.57382 4.62136 4.67029 4.68246 4.69682 4.72593 4.74243 4.75342 4.82526 4.83494 4.86397 4.88092 5.00177 5.04751 5.13804 5.22458 5.30609 5.38170 5.45137 5.49824 5.59640 5.65025 5.74942 5.80055 6.10547 6.45130 6.51359 6.69006 6.71711 7.26725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.475 4.475 2 Si 1.091 2.909 3 C -0.454 4.454 4 C -0.457 4.457 5 C -0.190 4.190 6 N -0.341 5.341 7 C 0.031 3.969 8 C -0.025 4.025 9 N -0.629 5.629 10 C 0.505 3.495 11 O -0.575 6.575 12 C -0.120 4.120 13 C -0.103 4.103 14 C 0.057 3.943 15 O -0.338 6.338 16 C 0.118 3.882 17 C -0.205 4.205 18 C -0.074 4.074 19 C -0.174 4.174 20 C -0.084 4.084 21 C -0.089 4.089 22 O -0.554 6.554 23 Si 0.995 3.005 24 H -0.255 1.255 25 H -0.277 1.277 26 H -0.246 1.246 27 C -0.148 4.148 28 C 0.018 3.982 29 N -0.322 5.322 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.133 0.867 41 H 0.221 0.779 42 H 0.430 0.570 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.084 0.916 48 H 0.084 0.916 49 H 0.155 0.845 50 H 0.156 0.844 51 H 0.135 0.865 52 H 0.119 0.881 53 H 0.389 0.611 54 H 0.121 0.879 55 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.921 0.792 -6.716 13.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.579 4.579 2 Si 1.281 2.719 3 C -0.563 4.563 4 C -0.564 4.564 5 C -0.353 4.353 6 N -0.123 5.123 7 C -0.119 4.119 8 C -0.130 4.130 9 N -0.276 5.276 10 C 0.294 3.706 11 O -0.454 6.454 12 C -0.160 4.160 13 C -0.141 4.141 14 C -0.017 4.017 15 O -0.252 6.252 16 C 0.072 3.928 17 C -0.224 4.224 18 C -0.092 4.092 19 C -0.192 4.192 20 C -0.085 4.085 21 C -0.198 4.198 22 O -0.361 6.361 23 Si 0.818 3.182 24 H -0.179 1.179 25 H -0.203 1.203 26 H -0.170 1.170 27 C -0.166 4.166 28 C -0.166 4.166 29 N -0.147 5.147 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.119 0.881 40 H 0.151 0.849 41 H 0.238 0.762 42 H 0.269 0.731 43 H 0.150 0.850 44 H 0.150 0.850 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.103 0.897 48 H 0.103 0.897 49 H 0.173 0.827 50 H 0.173 0.827 51 H 0.153 0.847 52 H 0.137 0.863 53 H 0.238 0.762 54 H 0.139 0.861 55 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 10.576 1.405 -5.243 11.888 hybrid contribution 0.121 -0.277 -0.458 0.549 sum 10.698 1.128 -5.701 12.174 Atomic orbital electron populations 1.26520 1.24514 1.02958 1.03937 0.78310 0.63970 0.65981 0.63657 1.26133 1.07360 1.17801 1.05018 1.26195 1.07481 1.07627 1.15141 1.27393 1.06634 0.81860 1.19439 1.48281 1.14693 1.07722 1.41640 1.22561 1.00875 0.85179 1.03251 1.17853 0.98077 0.86605 1.10421 1.42706 1.24627 1.03555 1.56724 1.21345 0.82499 0.88238 0.78492 1.90640 1.28123 1.84387 1.42209 1.21486 1.00961 0.87919 1.05585 1.21155 0.99110 0.91721 1.02094 1.23000 0.89348 0.88439 1.00923 1.86058 1.47361 1.15979 1.75819 1.19210 0.94977 0.83333 0.95238 1.21590 0.98874 0.98146 1.03767 1.21263 0.98759 0.92119 0.97048 1.21207 0.95200 1.00763 1.02039 1.20207 0.96404 0.94000 0.97876 1.25217 0.85892 1.07276 1.01448 1.86496 1.32023 1.93087 1.24531 0.85042 0.78868 0.73302 0.80959 1.17858 1.20288 1.16972 1.20353 0.99263 0.92235 1.04798 1.24305 0.99909 0.92029 1.00397 1.77379 1.03408 1.12582 1.21305 0.91991 0.91232 0.93626 0.89539 0.90688 0.90989 0.92068 0.90947 0.89162 0.88072 0.84906 0.76222 0.73079 0.84990 0.84964 0.92097 0.92096 0.89740 0.89742 0.82738 0.82680 0.84736 0.86314 0.76192 0.86094 0.80266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 -0.84 8.65 113.37 0.98 0.14 16 2 Si 1.09 -7.46 12.79 68.60 0.88 -6.59 16 3 C -0.45 3.37 8.65 113.37 0.98 4.36 16 4 C -0.46 3.04 8.65 113.37 0.98 4.03 16 5 C -0.19 0.93 5.59 127.77 0.71 1.65 16 6 N -0.34 -0.77 3.01 -182.93 -0.55 -1.32 16 7 C 0.03 -0.05 11.44 83.50 0.96 0.90 16 8 C -0.02 -0.09 6.90 37.62 0.26 0.17 16 9 N -0.63 1.63 5.47 -304.04 -1.66 -0.04 16 10 C 0.51 0.75 7.80 87.66 0.68 1.43 16 11 O -0.57 -6.94 13.14 -3.12 -0.04 -6.98 16 12 C -0.12 0.91 5.70 29.84 0.17 1.08 16 13 C -0.10 0.07 4.87 30.59 0.15 0.21 16 14 C 0.06 -0.17 4.74 71.98 0.34 0.17 16 15 O -0.34 -1.95 10.14 -92.43 -0.94 -2.88 16 16 C 0.12 0.57 6.69 22.50 0.15 0.72 16 17 C -0.21 0.08 9.04 22.36 0.20 0.29 16 18 C -0.07 0.11 10.04 22.25 0.22 0.34 16 19 C -0.17 -0.07 8.67 22.28 0.19 0.12 16 20 C -0.08 -0.25 5.35 -19.88 -0.11 -0.36 16 21 C -0.09 -0.11 2.80 71.23 0.20 0.09 16 22 O -0.55 -1.70 12.83 -148.98 -1.91 -3.61 16 23 Si 0.99 -0.89 25.14 68.60 1.72 0.84 16 24 H -0.25 0.07 7.11 99.48 0.71 0.77 16 25 H -0.28 -0.77 7.11 99.48 0.71 -0.07 16 26 H -0.25 0.48 7.04 99.48 0.70 1.18 16 27 C -0.15 -0.93 9.62 22.37 0.22 -0.71 16 28 C 0.02 0.21 10.84 85.33 0.92 1.14 16 29 N -0.32 -3.59 12.56 -56.77 -0.71 -4.30 16 30 H 0.06 0.18 7.96 -2.38 -0.02 0.16 16 31 H 0.07 0.06 7.96 -2.39 -0.02 0.04 16 32 H 0.04 0.32 7.96 -2.39 -0.02 0.30 16 33 H 0.09 -0.84 7.96 -2.39 -0.02 -0.86 16 34 H 0.07 -0.49 7.96 -2.39 -0.02 -0.51 16 35 H 0.07 -0.48 7.96 -2.39 -0.02 -0.49 16 36 H 0.06 -0.25 7.96 -2.39 -0.02 -0.27 16 37 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 38 H 0.09 -0.92 7.96 -2.38 -0.02 -0.94 16 39 H 0.10 -0.37 7.96 -2.38 -0.02 -0.39 16 40 H 0.13 -1.54 7.96 -2.39 -0.02 -1.56 16 41 H 0.22 -2.61 8.06 -2.91 -0.02 -2.63 16 42 H 0.43 -5.08 8.83 -92.71 -0.82 -5.90 16 43 H 0.13 -1.78 8.14 -2.39 -0.02 -1.80 16 44 H 0.13 -1.79 8.14 -2.39 -0.02 -1.81 16 45 H 0.06 0.25 8.10 -2.39 -0.02 0.23 16 46 H 0.06 0.25 8.10 -2.39 -0.02 0.23 16 47 H 0.08 -0.59 7.68 -2.39 -0.02 -0.61 16 48 H 0.08 -0.59 7.65 -2.39 -0.02 -0.61 16 49 H 0.16 -0.97 6.30 -2.91 -0.02 -0.99 16 50 H 0.16 -1.12 8.06 -2.91 -0.02 -1.14 16 51 H 0.14 -0.38 4.86 -2.91 -0.01 -0.39 16 52 H 0.12 0.06 7.96 -2.38 -0.02 0.04 16 53 H 0.39 -1.47 8.70 -74.06 -0.64 -2.12 16 54 H 0.12 0.96 8.06 -2.91 -0.02 0.94 16 55 H 0.18 2.78 5.92 -2.91 -0.02 2.76 16 Total: 0.00 -31.18 454.52 5.19 -25.99 By element: Atomic # 1 Polarization: -17.06 SS G_CDS: 0.19 Total: -16.87 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 8.22 Total: 15.76 kcal Atomic # 7 Polarization: -2.73 SS G_CDS: -2.93 Total: -5.66 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -2.89 Total: -13.48 kcal Atomic # 14 Polarization: -8.35 SS G_CDS: 2.60 Total: -5.75 kcal Total: -31.18 5.19 -25.99 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_4549616.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.464 kcal (2) G-P(sol) polarization free energy of solvation -31.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds