Wall clock time and date at job start Sun Mar 7 2021 10:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.38530 * 120.06859 * 0.02562 * 3 2 1 5 5 C 1.38290 * 119.99537 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.92476 * 180.02562 * 5 4 3 7 7 O 1.42897 * 109.47044 * 104.99952 * 6 5 4 8 8 Si 1.86304 * 109.47092 * 344.99581 * 6 5 4 9 9 H 1.48500 * 109.46942 * 60.00287 * 8 6 5 10 10 H 1.48495 * 109.46961 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47241 * 300.00495 * 8 6 5 12 12 C 1.38211 * 120.14717 * 0.02562 * 5 4 3 13 13 N 1.47999 * 119.92464 * 179.97438 * 12 5 4 14 14 O 1.21806 * 119.99825 * 180.02562 * 13 12 5 15 15 O 1.21798 * 120.00224 * 0.02562 * 13 12 5 16 16 C 1.38286 * 120.14654 * 0.02562 * 12 5 4 17 17 C 1.38527 * 120.00148 * 359.67740 * 16 12 5 18 18 O 1.35989 * 120.07678 * 180.29800 * 17 16 12 19 19 C 1.42902 * 116.99738 * 0.32059 * 18 17 16 20 20 C 1.50707 * 109.46833 * 180.02562 * 19 18 17 21 21 O 1.21306 * 120.00079 * 359.97438 * 20 19 18 22 22 N 1.34781 * 119.99636 * 179.97438 * 20 19 18 23 23 C 1.40760 * 119.99465 * 179.97438 * 22 20 19 24 24 C 1.35758 * 126.07822 * 180.02562 * 23 22 20 25 25 N 1.35815 * 107.56073 * 180.02562 * 24 23 22 26 26 C 1.46501 * 126.04866 * 179.97438 * 25 24 23 27 27 Si 1.86301 * 109.47177 * 90.00153 * 26 25 24 28 28 C 1.86304 * 109.47002 * 60.00112 * 27 26 25 29 29 C 1.86303 * 109.46931 * 179.97438 * 27 26 25 30 30 C 1.86297 * 109.47096 * 299.99823 * 27 26 25 31 31 N 1.40063 * 107.89676 * 0.02562 * 25 24 23 32 32 C 1.30829 * 108.36886 * 359.71464 * 31 25 24 33 33 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 35 35 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 36 36 H 1.07996 * 120.00403 * 359.97438 * 4 3 2 37 37 H 1.09001 * 109.46781 * 225.00237 * 6 5 4 38 38 H 0.96702 * 113.99812 * 299.99317 * 7 6 5 39 39 H 1.08003 * 120.00340 * 179.97438 * 16 12 5 40 40 H 1.09001 * 109.46853 * 299.99862 * 19 18 17 41 41 H 1.08991 * 109.47374 * 60.00076 * 19 18 17 42 42 H 0.96993 * 120.00203 * 0.02562 * 22 20 19 43 43 H 1.08001 * 126.21963 * 359.97438 * 24 23 22 44 44 H 1.09004 * 109.47242 * 210.00271 * 26 25 24 45 45 H 1.09000 * 109.47445 * 330.00183 * 26 25 24 46 46 H 1.08995 * 109.47136 * 59.99252 * 28 27 26 47 47 H 1.08996 * 109.46911 * 180.02562 * 28 27 26 48 48 H 1.09001 * 109.46550 * 299.99594 * 28 27 26 49 49 H 1.09007 * 109.46968 * 60.00597 * 29 27 26 50 50 H 1.09005 * 109.46950 * 179.97438 * 29 27 26 51 51 H 1.08991 * 109.47385 * 300.00261 * 29 27 26 52 52 H 1.08999 * 109.47070 * 60.00035 * 30 27 26 53 53 H 1.08996 * 109.46766 * 179.97438 * 30 27 26 54 54 H 1.09000 * 109.47142 * 299.99736 * 30 27 26 55 55 H 1.07996 * 125.83536 * 180.26319 * 32 31 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2935 2.3744 0.0005 5 6 1.9230 3.6057 0.0000 6 6 1.1022 4.8697 0.0012 7 8 1.1368 5.4588 1.3026 8 14 -0.6595 4.4666 -0.4516 9 1 -1.2190 3.5121 0.5389 10 1 -1.4680 5.7121 -0.4510 11 1 -0.6953 3.8542 -1.8040 12 6 3.3031 3.6798 -0.0016 13 7 3.9716 5.0002 -0.0027 14 8 5.1878 5.0670 -0.0046 15 8 3.3057 6.0200 -0.0018 16 6 4.0606 2.5229 -0.0032 17 6 3.4365 1.2862 0.0035 18 8 4.1799 0.1476 0.0081 19 6 5.6007 0.3005 0.0127 20 6 6.2522 -1.0584 0.0167 21 8 5.5672 -2.0595 0.0161 22 7 7.5961 -1.1614 0.0208 23 6 8.2046 -2.4307 0.0251 24 6 9.5396 -2.6773 0.0300 25 7 9.7073 -4.0250 0.0323 26 6 10.9892 -4.7343 0.0371 27 14 11.5273 -5.0325 1.7956 28 6 10.2449 -6.0618 2.6714 29 6 13.1571 -5.9351 1.8016 30 6 11.7178 -3.3997 2.6721 31 7 8.4378 -4.6168 0.0282 32 6 7.5396 -3.6656 0.0297 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3633 0.5139 -0.8900 35 1 -0.3633 0.5139 0.8900 36 1 0.2149 2.3193 0.0005 37 1 1.5130 5.5702 -0.7259 38 1 0.7856 4.8899 2.0013 39 1 5.1389 2.5834 -0.0049 40 1 5.9100 0.8487 -0.8773 41 1 5.9039 0.8518 0.9026 42 1 8.1439 -0.3610 0.0216 43 1 10.3254 -1.9364 0.0309 44 1 10.8778 -5.6896 -0.4758 45 1 11.7395 -4.1321 -0.4753 46 1 10.1335 -7.0170 2.1584 47 1 10.5596 -6.2359 3.7003 48 1 9.2912 -5.5340 2.6678 49 1 13.9077 -5.3332 1.2891 50 1 13.4722 -6.1092 2.8305 51 1 13.0453 -6.8904 1.2888 52 1 10.7640 -2.8720 2.6686 53 1 12.0322 -3.5743 3.7011 54 1 12.4681 -2.7976 2.1598 55 1 6.4689 -3.8070 0.0313 RHF calculation, no. of doubly occupied orbitals= 79 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_4549636.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:36:53 Heat of formation + Delta-G solvation = -48.496850 kcal Electronic energy + Delta-G solvation = -40610.779828 eV Core-core repulsion = 35165.055153 eV Total energy + Delta-G solvation = -5445.724675 eV No. of doubly occupied orbitals = 79 Molecular weight (most abundant/longest-lived isotopes) = 438.167 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -43.35570 -42.40230 -42.06126 -40.80538 -39.61399 -39.19005 -37.68935 -37.11926 -35.97606 -33.75585 -32.69019 -32.56691 -31.02574 -29.66074 -29.36744 -28.80022 -28.38490 -28.32315 -27.89385 -26.83815 -25.77391 -24.05560 -23.28728 -22.90769 -22.11955 -21.20039 -20.72727 -19.81022 -19.53849 -18.71333 -18.69071 -18.60617 -18.01907 -17.77556 -17.59391 -17.34204 -16.95159 -16.73612 -16.56225 -16.42425 -16.15427 -15.71064 -15.54528 -15.21249 -15.07172 -14.93588 -14.78674 -14.20115 -14.16189 -14.10894 -13.94158 -13.89331 -13.82575 -13.81126 -13.48286 -13.40336 -13.21646 -13.14635 -13.03058 -13.02587 -12.71971 -12.50123 -12.44918 -12.42035 -12.21220 -12.19508 -12.18580 -12.05237 -11.77658 -11.59498 -11.39696 -11.02675 -10.85441 -10.80926 -10.49657 -10.45040 -10.04768 -9.50303 -8.66458 -1.32380 -0.44494 0.19841 0.33931 0.71938 1.00820 1.09862 1.21700 1.33788 1.46387 1.49715 1.67677 1.84932 1.86875 1.87799 1.90120 2.02568 2.09906 2.36778 2.57167 2.97493 3.17624 3.27960 3.43453 3.50809 3.56868 3.74878 3.88874 3.91882 3.97086 3.99126 4.05234 4.07063 4.25365 4.25662 4.26395 4.34734 4.55909 4.61905 4.67705 4.68085 4.69772 4.72090 4.74058 4.74564 4.82791 4.84018 4.86885 4.88348 5.04839 5.31291 5.50461 5.54955 5.60330 5.65432 5.74023 6.02455 6.06558 6.37571 6.54224 6.65709 6.67257 7.08431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.307 6.307 3 C 0.167 3.833 4 C -0.182 4.182 5 C -0.039 4.039 6 C -0.098 4.098 7 O -0.533 6.533 8 Si 0.972 3.028 9 H -0.223 1.223 10 H -0.264 1.264 11 H -0.246 1.246 12 C -0.040 4.040 13 N 0.035 4.965 14 O -0.188 6.188 15 O -0.155 6.155 16 C -0.107 4.107 17 C 0.103 3.897 18 O -0.291 6.291 19 C 0.033 3.967 20 C 0.512 3.488 21 O -0.552 6.552 22 N -0.619 5.619 23 C -0.026 4.026 24 C 0.037 3.963 25 N -0.340 5.340 26 C -0.190 4.190 27 Si 1.093 2.907 28 C -0.476 4.476 29 C -0.455 4.455 30 C -0.458 4.458 31 N -0.320 5.320 32 C 0.021 3.979 33 H 0.124 0.876 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.180 0.820 37 H 0.128 0.872 38 H 0.386 0.614 39 H 0.188 0.812 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.433 0.567 43 H 0.224 0.776 44 H 0.102 0.898 45 H 0.134 0.866 46 H 0.061 0.939 47 H 0.068 0.932 48 H 0.045 0.955 49 H 0.085 0.915 50 H 0.073 0.927 51 H 0.071 0.929 52 H 0.061 0.939 53 H 0.071 0.929 54 H 0.089 0.911 55 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.182 -0.007 0.211 3.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.219 6.219 3 C 0.119 3.881 4 C -0.200 4.200 5 C -0.041 4.041 6 C -0.207 4.207 7 O -0.339 6.339 8 Si 0.791 3.209 9 H -0.146 1.146 10 H -0.188 1.188 11 H -0.169 1.169 12 C -0.125 4.125 13 N 0.549 4.451 14 O -0.397 6.397 15 O -0.371 6.371 16 C -0.127 4.127 17 C 0.056 3.944 18 O -0.203 6.203 19 C -0.044 4.044 20 C 0.299 3.701 21 O -0.429 6.429 22 N -0.267 5.267 23 C -0.130 4.130 24 C -0.112 4.112 25 N -0.122 5.122 26 C -0.353 4.353 27 Si 1.283 2.717 28 C -0.580 4.580 29 C -0.564 4.564 30 C -0.566 4.566 31 N -0.144 5.144 32 C -0.164 4.164 33 H 0.142 0.858 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.197 0.803 37 H 0.145 0.855 38 H 0.235 0.765 39 H 0.205 0.795 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.273 0.727 43 H 0.240 0.760 44 H 0.121 0.879 45 H 0.152 0.848 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.065 0.935 49 H 0.104 0.896 50 H 0.093 0.907 51 H 0.090 0.910 52 H 0.080 0.920 53 H 0.090 0.910 54 H 0.108 0.892 55 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 2.096 -2.782 -0.386 3.504 hybrid contribution 0.187 1.201 0.322 1.257 sum 2.283 -1.581 -0.063 2.778 Atomic orbital electron populations 1.23727 0.75155 1.06983 1.03510 1.86325 1.24390 1.24757 1.86382 1.18690 0.89383 0.86170 0.93906 1.21181 1.02016 0.88815 1.08027 1.20184 0.91373 0.97430 0.95090 1.25575 1.10531 0.93558 0.91000 1.86683 1.86975 1.44372 1.15887 0.85438 0.72859 0.80902 0.81706 1.14552 1.18835 1.16922 1.20508 0.92536 0.82199 1.17210 1.43642 1.00828 1.03283 0.97299 1.94508 0.96415 1.94056 1.54742 1.94578 1.64443 1.25156 1.52969 1.20947 1.03185 0.87975 1.00577 1.17906 0.88530 0.85235 1.02733 1.86291 1.18455 1.26830 1.88734 1.22826 0.78747 0.95040 1.07812 1.20394 0.82203 0.90974 0.76525 1.90685 1.63658 1.39399 1.49158 1.42307 1.05502 1.06780 1.72159 1.17726 0.91584 0.85941 1.17743 1.22581 0.96411 0.87094 1.05113 1.48302 1.05293 1.04120 1.54500 1.27397 0.82552 1.01760 1.23604 0.78280 0.64907 0.66487 0.62067 1.26519 1.12847 1.10018 1.08587 1.26147 1.16401 1.08629 1.05229 1.26211 1.04835 1.16953 1.08577 1.77399 0.88744 1.22901 1.25351 1.24300 1.00337 0.89812 1.01926 0.85817 0.90310 0.90084 0.80333 0.85472 0.76518 0.79465 0.84840 0.84837 0.72703 0.75979 0.87949 0.84824 0.91941 0.91273 0.93528 0.89581 0.90744 0.90970 0.91984 0.91020 0.89192 0.80220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.81 113.37 1.11 1.11 16 2 O -0.31 -0.48 10.28 -79.61 -0.82 -1.30 16 3 C 0.17 0.04 6.70 22.57 0.15 0.19 16 4 C -0.18 0.60 7.65 22.35 0.17 0.77 16 5 C -0.04 0.01 5.26 -19.86 -0.10 -0.09 16 6 C -0.10 0.06 1.74 71.24 0.12 0.19 16 7 O -0.53 -0.52 11.80 -129.63 -1.53 -2.04 16 8 Si 0.97 -4.58 25.49 68.60 1.75 -2.83 16 9 H -0.22 2.00 6.73 99.48 0.67 2.67 16 10 H -0.26 0.12 7.11 99.48 0.71 0.83 16 11 H -0.25 1.09 7.11 99.48 0.71 1.80 16 12 C -0.04 -0.10 6.85 36.38 0.25 0.15 16 13 N 0.04 0.28 4.45 -46.46 -0.21 0.07 16 14 O -0.19 -1.69 18.44 18.88 0.35 -1.34 16 15 O -0.16 -1.69 14.62 25.10 0.37 -1.32 16 16 C -0.11 0.15 8.54 22.35 0.19 0.34 16 17 C 0.10 0.06 6.70 22.57 0.15 0.21 16 18 O -0.29 -0.87 9.46 -67.02 -0.63 -1.50 16 19 C 0.03 -0.17 5.22 71.24 0.37 0.20 16 20 C 0.51 0.93 7.88 87.66 0.69 1.62 16 21 O -0.55 -6.98 13.66 15.92 0.22 -6.76 16 22 N -0.62 2.12 5.47 -304.03 -1.66 0.46 16 23 C -0.03 -0.07 6.90 37.62 0.26 0.19 16 24 C 0.04 -0.11 11.44 83.50 0.96 0.85 16 25 N -0.34 -0.40 3.01 -182.92 -0.55 -0.95 16 26 C -0.19 1.10 5.59 127.77 0.71 1.81 16 27 Si 1.09 -8.13 12.79 68.60 0.88 -7.25 16 28 C -0.48 -0.51 8.65 113.37 0.98 0.47 16 29 C -0.46 3.53 8.65 113.37 0.98 4.51 16 30 C -0.46 3.22 8.65 113.37 0.98 4.20 16 31 N -0.32 -3.15 12.56 -56.77 -0.71 -3.87 16 32 C 0.02 0.22 10.84 85.33 0.92 1.14 16 33 H 0.12 -1.13 8.14 -2.39 -0.02 -1.15 16 34 H 0.08 -0.80 7.66 -2.39 -0.02 -0.82 16 35 H 0.08 -0.85 7.66 -2.38 -0.02 -0.87 16 36 H 0.18 -1.49 3.12 -2.91 -0.01 -1.50 16 37 H 0.13 0.23 6.07 -2.39 -0.01 0.22 16 38 H 0.39 -2.84 8.70 -74.06 -0.64 -3.48 16 39 H 0.19 -1.26 5.85 -2.91 -0.02 -1.27 16 40 H 0.13 -1.56 7.65 -2.39 -0.02 -1.58 16 41 H 0.13 -1.56 7.68 -2.39 -0.02 -1.58 16 42 H 0.43 -5.60 8.83 -92.71 -0.82 -6.42 16 43 H 0.22 -2.90 8.06 -2.91 -0.02 -2.93 16 44 H 0.10 -0.47 7.96 -2.38 -0.02 -0.49 16 45 H 0.13 -1.66 7.96 -2.39 -0.02 -1.67 16 46 H 0.06 0.14 7.96 -2.39 -0.02 0.12 16 47 H 0.07 0.02 7.96 -2.39 -0.02 0.00 16 48 H 0.05 0.28 7.96 -2.39 -0.02 0.26 16 49 H 0.09 -0.85 7.96 -2.38 -0.02 -0.87 16 50 H 0.07 -0.50 7.96 -2.38 -0.02 -0.52 16 51 H 0.07 -0.50 7.96 -2.39 -0.02 -0.52 16 52 H 0.06 -0.29 7.96 -2.39 -0.02 -0.31 16 53 H 0.07 -0.42 7.96 -2.39 -0.02 -0.44 16 54 H 0.09 -0.94 7.96 -2.39 -0.02 -0.96 16 55 H 0.18 2.57 5.92 -2.91 -0.02 2.55 16 Total: 0.00 -36.26 462.97 6.58 -29.68 By element: Atomic # 1 Polarization: -19.17 SS G_CDS: 0.24 Total: -18.93 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 8.91 Total: 17.88 kcal Atomic # 7 Polarization: -1.15 SS G_CDS: -3.14 Total: -4.29 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -2.05 Total: -14.26 kcal Atomic # 14 Polarization: -12.71 SS G_CDS: 2.63 Total: -10.08 kcal Total: -36.26 6.58 -29.68 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_4549636.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.817 kcal (2) G-P(sol) polarization free energy of solvation -36.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds