Wall clock time and date at job start Sun Mar 7 2021 10:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86305 * 109.47263 * 2 1 4 4 C 1.86296 * 109.47186 * 239.99530 * 2 1 3 5 5 C 1.86299 * 109.46625 * 119.99818 * 2 1 3 6 6 N 1.46501 * 109.47321 * 59.99872 * 5 2 1 7 7 C 1.35808 * 126.05180 * 90.00117 * 6 5 2 8 8 C 1.35759 * 107.56510 * 179.97438 * 7 6 5 9 9 N 1.40760 * 126.08004 * 179.97438 * 8 7 6 10 10 C 1.34782 * 119.99719 * 179.97438 * 9 8 7 11 11 O 1.21309 * 119.99775 * 359.97438 * 10 9 8 12 12 C 1.50694 * 119.99926 * 180.02562 * 10 9 8 13 13 O 1.42901 * 109.46937 * 180.02562 * 12 10 9 14 14 C 1.35905 * 116.99604 * 180.02562 * 13 12 10 15 15 C 1.38701 * 120.05928 * 359.72208 * 14 13 12 16 16 C 1.38166 * 119.94369 * 179.71820 * 15 14 13 17 17 C 1.38238 * 120.05745 * 0.53837 * 16 15 14 18 18 C 1.50706 * 119.94775 * 179.73853 * 17 16 15 19 19 O 1.42899 * 109.47182 * 245.02385 * 18 17 16 20 20 Si 1.86295 * 109.46935 * 5.02436 * 18 17 16 21 21 H 1.48497 * 109.47203 * 59.99660 * 20 18 17 22 22 H 1.48496 * 109.47327 * 179.97438 * 20 18 17 23 23 H 1.48510 * 109.47177 * 299.99670 * 20 18 17 24 24 C 1.38291 * 120.10926 * 359.76415 * 17 16 15 25 25 C 1.38119 * 120.05500 * 359.95562 * 24 17 16 26 26 N 1.48006 * 120.02627 * 180.02562 * 25 24 17 27 27 O 1.21799 * 120.00163 * 359.96932 * 26 25 24 28 28 O 1.21805 * 119.99918 * 179.97438 * 26 25 24 29 29 C 1.40254 * 107.83470 * 0.25651 * 8 7 6 30 30 N 1.30830 * 108.33525 * 359.55980 * 29 8 7 31 31 H 1.09002 * 109.47284 * 300.00624 * 1 2 3 32 32 H 1.09007 * 109.46764 * 60.00009 * 1 2 3 33 33 H 1.08996 * 109.47439 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.46777 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.46557 * 299.99952 * 3 2 1 36 36 H 1.08995 * 109.47109 * 59.99621 * 3 2 1 37 37 H 1.08996 * 109.47315 * 300.00546 * 4 2 1 38 38 H 1.09007 * 109.46893 * 60.00540 * 4 2 1 39 39 H 1.08997 * 109.46757 * 180.02562 * 4 2 1 40 40 H 1.09006 * 109.47368 * 299.99611 * 5 2 1 41 41 H 1.09006 * 109.46778 * 180.02562 * 5 2 1 42 42 H 1.08005 * 126.22147 * 359.97438 * 7 6 5 43 43 H 0.96995 * 120.00348 * 0.02562 * 9 8 7 44 44 H 1.08999 * 109.47314 * 60.00033 * 12 10 9 45 45 H 1.08998 * 109.47471 * 300.00068 * 12 10 9 46 46 H 1.08001 * 120.02725 * 0.02562 * 15 14 13 47 47 H 1.08007 * 119.97106 * 180.27414 * 16 15 14 48 48 H 1.09001 * 109.46537 * 125.02325 * 18 17 16 49 49 H 0.96701 * 114.00449 * 59.99872 * 19 18 17 50 50 H 1.08008 * 119.97030 * 179.97438 * 24 17 16 51 51 H 1.07996 * 125.83343 * 179.73783 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5210 5 6 2.4839 -0.8782 1.5212 6 7 1.9955 -2.2594 1.5213 7 6 2.6256 -3.3300 0.9724 8 6 1.8451 -4.4197 1.1882 9 7 2.1290 -5.7365 0.7800 10 6 1.2633 -6.7306 1.0612 11 8 0.2398 -6.4904 1.6665 12 6 1.5674 -8.1405 0.6248 13 8 0.5070 -9.0056 1.0362 14 6 0.6264 -10.3217 0.7190 15 6 1.7380 -10.7702 0.0212 16 6 1.8597 -12.1097 -0.2949 17 6 0.8694 -13.0009 0.0739 18 6 1.0019 -14.4604 -0.2773 19 8 -0.0314 -14.8253 -1.1945 20 14 2.6642 -14.7617 -1.0625 21 1 3.7379 -14.3825 -0.1094 22 1 2.7951 -16.2000 -1.4081 23 1 2.7849 -13.9429 -2.2956 24 6 -0.2429 -12.5552 0.7642 25 6 -0.3665 -11.2182 1.0877 26 7 -1.5570 -10.7420 1.8270 27 8 -2.4285 -11.5292 2.1500 28 8 -1.6653 -9.5628 2.1124 29 6 0.7027 -3.9987 1.8844 30 7 0.7964 -2.7098 2.0880 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3634 -1.0276 0.0005 34 1 3.5741 1.7564 0.0005 35 1 2.1207 2.2702 -0.8900 36 1 2.1207 2.2703 0.8899 37 1 2.1207 -1.9059 -1.5210 38 1 2.1208 -0.3645 -2.4111 39 1 3.5740 -0.8787 -1.5207 40 1 2.1206 -0.3643 2.4112 41 1 3.5739 -0.8778 1.5215 42 1 3.5750 -3.3169 0.4578 43 1 2.9478 -5.9288 0.2970 44 1 2.5018 -8.4683 1.0803 45 1 1.6615 -8.1726 -0.4607 46 1 2.5102 -10.0737 -0.2704 47 1 2.7273 -12.4601 -0.8344 48 1 0.9132 -15.0614 0.6278 49 1 -0.0138 -14.3294 -2.0245 50 1 -1.0155 -13.2534 1.0510 51 1 -0.1135 -4.6311 2.2011 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_4549638.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:41:38 Heat of formation + Delta-G solvation = -22.771963 kcal Electronic energy + Delta-G solvation = -35669.342965 eV Core-core repulsion = 30698.953616 eV Total energy + Delta-G solvation = -4970.389349 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 408.152 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -43.27728 -42.36482 -41.69272 -40.54032 -39.36771 -37.57301 -37.36017 -35.94255 -33.76060 -33.45241 -32.26366 -31.05593 -29.64664 -29.31181 -28.38295 -28.31723 -27.81181 -26.92395 -26.42174 -24.23748 -23.11034 -22.69742 -22.07304 -21.16163 -20.46531 -19.76164 -19.24349 -18.62032 -18.60308 -18.23331 -17.98218 -17.61065 -17.13751 -16.68450 -16.47649 -16.31001 -16.08836 -15.71038 -15.61333 -15.37982 -15.13566 -14.99082 -14.19548 -14.16205 -14.10580 -14.06349 -13.91522 -13.83213 -13.80511 -13.76360 -13.41730 -13.22171 -13.20463 -13.13621 -13.01911 -12.68611 -12.41126 -12.29271 -12.25682 -12.18190 -12.15775 -12.06652 -11.74778 -11.70936 -11.37651 -10.96493 -10.85009 -10.82907 -10.80198 -10.50629 -10.03173 -9.79374 -8.63538 -1.30690 -0.23450 0.16153 0.36363 0.75056 1.09150 1.16780 1.26263 1.49061 1.49894 1.56490 1.68337 1.87879 2.00161 2.04034 2.05587 2.11228 2.35954 2.58029 3.13071 3.23220 3.40717 3.54167 3.60183 3.70075 3.77449 3.79358 3.92646 4.01089 4.01843 4.27652 4.30196 4.40692 4.57373 4.58954 4.63745 4.68345 4.69802 4.73895 4.74894 4.82671 4.83811 4.85191 4.87501 4.89304 5.08202 5.09175 5.20862 5.50706 5.61035 5.66045 5.72229 5.79198 6.09782 6.43069 6.44066 6.69702 6.69936 7.16644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.478 4.478 2 Si 1.094 2.906 3 C -0.455 4.455 4 C -0.455 4.455 5 C -0.189 4.189 6 N -0.341 5.341 7 C 0.038 3.962 8 C -0.024 4.024 9 N -0.617 5.617 10 C 0.503 3.497 11 O -0.551 6.551 12 C 0.032 3.968 13 O -0.291 6.291 14 C 0.194 3.806 15 C -0.188 4.188 16 C -0.018 4.018 17 C -0.150 4.150 18 C -0.088 4.088 19 O -0.555 6.555 20 Si 0.986 3.014 21 H -0.241 1.241 22 H -0.281 1.281 23 H -0.229 1.229 24 C 0.001 3.999 25 C -0.103 4.103 26 N 0.034 4.966 27 O -0.200 6.200 28 O -0.175 6.175 29 C 0.018 3.982 30 N -0.323 5.323 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.135 0.865 42 H 0.227 0.773 43 H 0.435 0.565 44 H 0.148 0.852 45 H 0.149 0.851 46 H 0.206 0.794 47 H 0.178 0.822 48 H 0.124 0.876 49 H 0.392 0.608 50 H 0.155 0.845 51 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.563 0.758 -9.759 20.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.582 4.582 2 Si 1.283 2.717 3 C -0.564 4.564 4 C -0.563 4.563 5 C -0.353 4.353 6 N -0.123 5.123 7 C -0.111 4.111 8 C -0.128 4.128 9 N -0.266 5.266 10 C 0.290 3.710 11 O -0.427 6.427 12 C -0.045 4.045 13 O -0.201 6.201 14 C 0.145 3.855 15 C -0.207 4.207 16 C -0.036 4.036 17 C -0.151 4.151 18 C -0.196 4.196 19 O -0.362 6.362 20 Si 0.807 3.193 21 H -0.164 1.164 22 H -0.206 1.206 23 H -0.152 1.152 24 C -0.018 4.018 25 C -0.189 4.189 26 N 0.544 4.456 27 O -0.408 6.408 28 O -0.388 6.388 29 C -0.167 4.167 30 N -0.147 5.147 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.110 0.890 40 H 0.118 0.882 41 H 0.153 0.847 42 H 0.244 0.756 43 H 0.275 0.725 44 H 0.166 0.834 45 H 0.166 0.834 46 H 0.223 0.777 47 H 0.195 0.805 48 H 0.142 0.858 49 H 0.241 0.759 50 H 0.173 0.827 51 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 17.319 1.374 -8.890 19.516 hybrid contribution -1.106 -0.311 0.186 1.163 sum 16.214 1.063 -8.704 18.433 Atomic orbital electron populations 1.26563 1.24837 1.02936 1.03849 0.78280 0.63706 0.65959 0.63765 1.26146 1.07401 1.17904 1.04949 1.26175 1.07562 1.07672 1.14940 1.27394 1.06748 0.81786 1.19381 1.48309 1.14646 1.07816 1.41509 1.22598 1.00807 0.84865 1.02817 1.17711 0.98156 0.86118 1.10856 1.42260 1.24312 1.03168 1.56888 1.20589 0.83359 0.87278 0.79768 1.90757 1.27644 1.83656 1.40645 1.23020 0.91151 0.85571 1.04786 1.86464 1.45626 1.14568 1.73444 1.18922 0.92369 0.83064 0.91182 1.21779 0.97700 0.98591 1.02598 1.21743 0.97457 0.92024 0.92339 1.20463 0.94427 0.98509 1.01746 1.25303 1.04458 0.91067 0.98821 1.86553 1.53265 1.65291 1.31132 0.85198 0.73067 0.80351 0.80671 1.16402 1.20634 1.15171 1.20884 0.98509 0.90805 0.91625 1.20894 0.89410 0.95996 1.12570 1.43904 1.02206 1.00576 0.98904 1.94502 1.35717 1.52430 1.58188 1.94687 1.84822 1.00616 1.58676 1.24291 0.99939 0.92088 1.00346 1.77413 1.03447 1.12519 1.21309 0.92128 0.91309 0.93634 0.89462 0.90754 0.91098 0.91896 0.91014 0.88988 0.88164 0.84655 0.75642 0.72526 0.83417 0.83376 0.77678 0.80520 0.85772 0.75891 0.82728 0.80657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 -0.83 8.65 113.37 0.98 0.15 16 2 Si 1.09 -8.23 12.79 68.60 0.88 -7.36 16 3 C -0.46 3.59 8.65 113.37 0.98 4.57 16 4 C -0.46 3.58 8.65 113.37 0.98 4.56 16 5 C -0.19 1.10 5.59 127.77 0.71 1.82 16 6 N -0.34 -0.42 3.01 -182.92 -0.55 -0.97 16 7 C 0.04 -0.14 11.44 83.50 0.96 0.82 16 8 C -0.02 -0.05 6.90 37.62 0.26 0.21 16 9 N -0.62 3.06 5.47 -304.04 -1.66 1.40 16 10 C 0.50 0.66 7.88 87.65 0.69 1.35 16 11 O -0.55 -8.15 13.66 15.92 0.22 -7.93 16 12 C 0.03 -0.26 5.22 71.23 0.37 0.11 16 13 O -0.29 -1.15 7.68 -63.46 -0.49 -1.63 16 14 C 0.19 0.05 6.67 22.50 0.15 0.20 16 15 C -0.19 2.04 9.04 22.36 0.20 2.24 16 16 C -0.02 0.20 8.66 22.25 0.19 0.39 16 17 C -0.15 0.88 5.35 -19.85 -0.11 0.77 16 18 C -0.09 0.63 2.80 71.24 0.20 0.83 16 19 O -0.55 2.21 12.83 -148.98 -1.91 0.29 16 20 Si 0.99 -9.82 25.13 68.60 1.72 -8.09 16 21 H -0.24 2.56 7.11 99.48 0.71 3.27 16 22 H -0.28 1.07 7.11 99.48 0.71 1.78 16 23 H -0.23 2.94 7.04 99.48 0.70 3.64 16 24 C 0.00 0.00 9.19 22.25 0.20 0.21 16 25 C -0.10 -0.70 6.87 36.47 0.25 -0.44 16 26 N 0.03 0.56 4.45 -46.24 -0.21 0.36 16 27 O -0.20 -3.72 18.45 18.89 0.35 -3.37 16 28 O -0.17 -3.80 17.24 25.60 0.44 -3.36 16 29 C 0.02 0.21 10.84 85.33 0.92 1.13 16 30 N -0.32 -3.52 12.56 -56.77 -0.71 -4.23 16 31 H 0.06 0.19 7.96 -2.39 -0.02 0.17 16 32 H 0.07 0.06 7.96 -2.38 -0.02 0.04 16 33 H 0.04 0.32 7.96 -2.39 -0.02 0.30 16 34 H 0.09 -0.90 7.96 -2.39 -0.02 -0.92 16 35 H 0.07 -0.51 7.96 -2.39 -0.02 -0.53 16 36 H 0.07 -0.48 7.96 -2.39 -0.02 -0.50 16 37 H 0.06 -0.35 7.96 -2.39 -0.02 -0.37 16 38 H 0.07 -0.47 7.96 -2.38 -0.02 -0.49 16 39 H 0.09 -1.07 7.96 -2.39 -0.02 -1.09 16 40 H 0.10 -0.42 7.96 -2.38 -0.02 -0.44 16 41 H 0.14 -1.75 7.96 -2.38 -0.02 -1.77 16 42 H 0.23 -3.32 8.06 -2.91 -0.02 -3.34 16 43 H 0.43 -6.97 8.83 -92.71 -0.82 -7.79 16 44 H 0.15 -2.55 7.67 -2.39 -0.02 -2.57 16 45 H 0.15 -2.58 7.65 -2.39 -0.02 -2.60 16 46 H 0.21 -4.35 6.30 -2.91 -0.02 -4.37 16 47 H 0.18 -3.11 4.86 -2.91 -0.01 -3.12 16 48 H 0.12 -0.93 7.96 -2.39 -0.02 -0.95 16 49 H 0.39 -4.41 8.70 -74.06 -0.64 -5.05 16 50 H 0.16 0.42 7.61 -2.91 -0.02 0.40 16 51 H 0.18 2.95 5.92 -2.91 -0.02 2.93 16 Total: 0.00 -45.68 438.09 6.32 -39.36 By element: Atomic # 1 Polarization: -23.66 SS G_CDS: 0.29 Total: -23.37 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: 7.95 Total: 18.91 kcal Atomic # 7 Polarization: -0.31 SS G_CDS: -3.13 Total: -3.45 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -1.39 Total: -16.00 kcal Atomic # 14 Polarization: -18.05 SS G_CDS: 2.60 Total: -15.45 kcal Total: -45.68 6.32 -39.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_4549638.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.590 kcal (2) G-P(sol) polarization free energy of solvation -45.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds