Wall clock time and date at job start Sun Mar 7 2021 10:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 109.47454 * 2 1 4 4 C 1.86303 * 109.46961 * 240.00100 * 2 1 3 5 5 C 1.86297 * 109.46969 * 120.00523 * 2 1 3 6 6 N 1.46495 * 109.47457 * 59.99555 * 5 2 1 7 7 C 1.35814 * 126.05052 * 90.00098 * 6 5 2 8 8 C 1.35755 * 107.56144 * 179.97438 * 7 6 5 9 9 N 1.40765 * 126.08137 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99854 * 179.97438 * 9 8 7 11 11 O 1.21303 * 120.00450 * 0.02562 * 10 9 8 12 12 C 1.50700 * 119.99675 * 179.72930 * 10 9 8 13 13 O 1.42899 * 109.47143 * 180.27800 * 12 10 9 14 14 C 1.35901 * 116.99988 * 179.97438 * 13 12 10 15 15 C 1.38708 * 120.05836 * 359.72927 * 14 13 12 16 16 C 1.38168 * 119.94815 * 179.71944 * 15 14 13 17 17 C 1.38245 * 120.05134 * 0.56982 * 16 15 14 18 18 C 1.38294 * 120.11364 * 359.68684 * 17 16 15 19 19 C 1.50694 * 119.97212 * 180.02562 * 18 17 16 20 20 O 1.42904 * 109.46797 * 245.01527 * 19 18 17 21 21 Si 1.86292 * 109.47525 * 5.01421 * 19 18 17 22 22 H 1.48503 * 109.47004 * 60.00133 * 21 19 18 23 23 H 1.48500 * 109.47507 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47303 * 300.00657 * 21 19 18 25 25 C 1.38126 * 120.05256 * 0.03295 * 18 17 16 26 26 C 1.40256 * 107.84136 * 0.24533 * 8 7 6 27 27 N 1.30835 * 108.33208 * 359.58580 * 26 8 7 28 28 H 1.08999 * 109.46642 * 300.00296 * 1 2 3 29 29 H 1.09010 * 109.47046 * 59.99510 * 1 2 3 30 30 H 1.08991 * 109.47653 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47470 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47080 * 300.00228 * 3 2 1 33 33 H 1.09003 * 109.46763 * 59.99942 * 3 2 1 34 34 H 1.09001 * 109.47181 * 300.00541 * 4 2 1 35 35 H 1.08997 * 109.47119 * 60.00049 * 4 2 1 36 36 H 1.08998 * 109.47103 * 179.97438 * 4 2 1 37 37 H 1.09007 * 109.46642 * 299.99417 * 5 2 1 38 38 H 1.09003 * 109.47160 * 180.02562 * 5 2 1 39 39 H 1.07992 * 126.22132 * 359.97438 * 7 6 5 40 40 H 0.97001 * 119.99661 * 0.02562 * 9 8 7 41 41 H 1.09009 * 109.47352 * 300.27556 * 12 10 9 42 42 H 1.08998 * 109.47585 * 60.27844 * 12 10 9 43 43 H 1.08004 * 120.02837 * 359.97438 * 15 14 13 44 44 H 1.07998 * 119.97383 * 180.27704 * 16 15 14 45 45 H 1.08002 * 119.94663 * 179.70213 * 17 16 15 46 46 H 1.09005 * 109.47228 * 125.02280 * 19 18 17 47 47 H 0.96696 * 113.99848 * 60.00148 * 20 19 18 48 48 H 1.08001 * 120.02638 * 180.02562 * 25 18 17 49 49 H 1.07995 * 125.83761 * 179.76181 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4840 -0.8784 1.5210 6 7 1.9956 -2.2595 1.5210 7 6 2.6257 -3.3301 0.9720 8 6 1.8452 -4.4197 1.1877 9 7 2.1289 -5.7366 0.7794 10 6 1.2633 -6.7306 1.0607 11 8 0.2394 -6.4904 1.6652 12 6 1.5641 -8.1394 0.6182 13 8 0.5017 -9.0038 1.0257 14 6 0.6174 -10.3186 0.7020 15 6 1.7278 -10.7666 0.0017 16 6 1.8460 -12.1048 -0.3212 17 6 0.8530 -12.9951 0.0429 18 6 -0.2576 -12.5501 0.7365 19 6 -1.3379 -13.5235 1.1322 20 8 -2.5474 -13.1982 0.4442 21 14 -0.8120 -15.2525 0.6802 22 1 0.4449 -15.5905 1.3952 23 1 -1.8768 -16.2116 1.0696 24 1 -0.5850 -15.3337 -0.7852 25 6 -0.3776 -11.2143 1.0666 26 6 0.7029 -3.9990 1.8844 27 7 0.7964 -2.7099 2.0877 28 1 -0.3632 0.5139 0.8900 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3634 -1.0275 -0.0005 31 1 3.5741 1.7564 0.0005 32 1 2.1208 2.2702 -0.8899 33 1 2.1207 2.2702 0.8900 34 1 2.1205 -1.9059 -1.5213 35 1 2.1206 -0.3644 -2.4111 36 1 3.5739 -0.8778 -1.5214 37 1 2.1206 -0.3645 2.4111 38 1 3.5740 -0.8780 1.5213 39 1 3.5750 -3.3169 0.4573 40 1 2.9478 -5.9288 0.2963 41 1 1.6588 -8.1670 -0.4674 42 1 2.4974 -8.4716 1.0729 43 1 2.5014 -10.0706 -0.2874 44 1 2.7125 -12.4548 -0.8625 45 1 0.9448 -14.0399 -0.2146 46 1 -1.5045 -13.4638 2.2078 47 1 -2.4728 -13.2310 -0.5193 48 1 -1.2449 -10.8673 1.6087 49 1 -0.1130 -4.6314 2.2015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_4860298.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:42:32 Heat of formation + Delta-G solvation = -27.384121 kcal Electronic energy + Delta-G solvation = -28947.157147 eV Core-core repulsion = 24807.584235 eV Total energy + Delta-G solvation = -4139.572912 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 363.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.37730 -41.45107 -40.42016 -38.95377 -37.22854 -35.95950 -33.74872 -32.46787 -31.81737 -30.72910 -29.57828 -29.03127 -28.38620 -28.31617 -26.96098 -26.57605 -23.69836 -23.40001 -22.42767 -21.88366 -21.08486 -19.30142 -18.62030 -18.28836 -17.61190 -17.48448 -17.23775 -16.96746 -16.52425 -16.42959 -16.15422 -15.62253 -15.49473 -15.20650 -14.95286 -14.91138 -14.40215 -14.19922 -14.16275 -14.05256 -14.03828 -13.83789 -13.81420 -13.47200 -13.42135 -13.21649 -13.14307 -13.02503 -12.97871 -12.57586 -12.24956 -12.15448 -12.04375 -11.94766 -11.77542 -11.52918 -11.39362 -10.96671 -10.85440 -10.80730 -10.45606 -10.04636 -9.91890 -9.28235 -8.65759 0.21541 0.38807 0.72664 1.14468 1.22162 1.26568 1.48298 1.55084 1.59276 1.69521 1.87116 1.93134 2.03747 2.12160 2.57281 2.60204 2.67616 3.49070 3.55120 3.70551 3.75411 3.85415 3.99090 4.01338 4.09525 4.10456 4.23109 4.26250 4.38071 4.56234 4.57116 4.67463 4.68755 4.69709 4.72081 4.74346 4.83174 4.84441 4.87091 4.88735 4.99412 5.06353 5.24425 5.36097 5.44653 5.50349 5.60489 5.65595 5.68338 5.74474 6.07374 6.27967 6.44677 6.67629 6.69342 7.12189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.477 4.477 2 Si 1.094 2.906 3 C -0.455 4.455 4 C -0.457 4.457 5 C -0.190 4.190 6 N -0.340 5.340 7 C 0.038 3.962 8 C -0.026 4.026 9 N -0.618 5.618 10 C 0.508 3.492 11 O -0.558 6.558 12 C 0.045 3.955 13 O -0.321 6.321 14 C 0.116 3.884 15 C -0.201 4.201 16 C -0.072 4.072 17 C -0.171 4.171 18 C -0.084 4.084 19 C -0.091 4.091 20 O -0.555 6.555 21 Si 0.997 3.003 22 H -0.253 1.253 23 H -0.279 1.279 24 H -0.245 1.245 25 C -0.145 4.145 26 C 0.019 3.981 27 N -0.320 5.320 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.135 0.865 39 H 0.226 0.774 40 H 0.434 0.566 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.164 0.836 44 H 0.160 0.840 45 H 0.136 0.864 46 H 0.117 0.883 47 H 0.389 0.611 48 H 0.117 0.883 49 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.905 0.845 -6.676 13.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.581 4.581 2 Si 1.283 2.717 3 C -0.564 4.564 4 C -0.565 4.565 5 C -0.353 4.353 6 N -0.122 5.122 7 C -0.111 4.111 8 C -0.130 4.130 9 N -0.267 5.267 10 C 0.295 3.705 11 O -0.436 6.436 12 C -0.033 4.033 13 O -0.235 6.235 14 C 0.071 3.929 15 C -0.220 4.220 16 C -0.089 4.089 17 C -0.189 4.189 18 C -0.085 4.085 19 C -0.201 4.201 20 O -0.362 6.362 21 Si 0.820 3.180 22 H -0.177 1.177 23 H -0.204 1.204 24 H -0.168 1.168 25 C -0.164 4.164 26 C -0.166 4.166 27 N -0.145 5.145 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.120 0.880 38 H 0.153 0.847 39 H 0.242 0.758 40 H 0.273 0.727 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.181 0.819 44 H 0.177 0.823 45 H 0.154 0.846 46 H 0.135 0.865 47 H 0.238 0.762 48 H 0.135 0.865 49 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 10.539 1.450 -5.199 11.841 hybrid contribution 0.095 -0.345 -0.462 0.585 sum 10.634 1.104 -5.661 12.098 Atomic orbital electron populations 1.26542 1.24667 1.02966 1.03919 0.78280 0.63834 0.65960 0.63650 1.26139 1.07383 1.17840 1.04994 1.26196 1.07530 1.07661 1.15096 1.27405 1.06749 0.81727 1.19461 1.48308 1.14638 1.07793 1.41473 1.22582 1.00794 0.84928 1.02825 1.17751 0.98327 0.86026 1.10917 1.42316 1.24345 1.03331 1.56743 1.20654 0.83150 0.87280 0.79377 1.90672 1.27769 1.83844 1.41268 1.22633 0.91506 0.85587 1.03559 1.86119 1.45398 1.16279 1.75662 1.19186 0.95433 0.82473 0.95831 1.21633 0.98592 0.98377 1.03361 1.21292 0.98723 0.92042 0.96889 1.21240 0.95064 1.00913 1.01700 1.20200 0.96526 0.93813 0.97960 1.25252 0.85905 1.07429 1.01465 1.86503 1.32154 1.93022 1.24546 0.85021 0.78891 0.73097 0.81020 1.17700 1.20429 1.16800 1.20318 0.99167 0.92289 1.04615 1.24284 0.99861 0.92095 1.00334 1.77403 1.03394 1.12422 1.21260 0.92013 0.91269 0.93613 0.89503 0.90725 0.91017 0.91991 0.90995 0.89083 0.88024 0.84717 0.75797 0.72674 0.85176 0.85209 0.81859 0.82269 0.84641 0.86468 0.76182 0.86511 0.80481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 -0.78 8.65 113.37 0.98 0.20 16 2 Si 1.09 -7.93 12.79 68.60 0.88 -7.06 16 3 C -0.45 3.51 8.65 113.37 0.98 4.49 16 4 C -0.46 3.27 8.65 113.37 0.98 4.26 16 5 C -0.19 1.05 5.59 127.77 0.71 1.76 16 6 N -0.34 -0.57 3.01 -182.93 -0.55 -1.12 16 7 C 0.04 -0.10 11.44 83.50 0.96 0.86 16 8 C -0.03 -0.09 6.90 37.62 0.26 0.17 16 9 N -0.62 1.64 5.47 -304.04 -1.66 -0.03 16 10 C 0.51 1.79 7.88 87.66 0.69 2.48 16 11 O -0.56 -8.45 13.66 15.93 0.22 -8.23 16 12 C 0.04 -0.16 5.22 71.24 0.37 0.21 16 13 O -0.32 -2.08 9.67 -73.40 -0.71 -2.79 16 14 C 0.12 0.47 6.69 22.51 0.15 0.62 16 15 C -0.20 0.56 9.04 22.37 0.20 0.76 16 16 C -0.07 0.25 10.04 22.25 0.22 0.47 16 17 C -0.17 0.12 8.67 22.28 0.19 0.31 16 18 C -0.08 -0.23 5.35 -19.88 -0.11 -0.33 16 19 C -0.09 -0.12 2.80 71.23 0.20 0.08 16 20 O -0.56 -1.90 12.83 -148.98 -1.91 -3.81 16 21 Si 1.00 -1.14 25.14 68.60 1.72 0.58 16 22 H -0.25 0.19 7.11 99.48 0.71 0.90 16 23 H -0.28 -0.78 7.11 99.48 0.71 -0.07 16 24 H -0.24 0.60 7.04 99.48 0.70 1.30 16 25 C -0.14 -0.93 9.62 22.37 0.22 -0.71 16 26 C 0.02 0.22 10.84 85.33 0.92 1.15 16 27 N -0.32 -3.49 12.56 -56.77 -0.71 -4.20 16 28 H 0.06 0.18 7.96 -2.39 -0.02 0.16 16 29 H 0.07 0.05 7.96 -2.38 -0.02 0.04 16 30 H 0.04 0.31 7.96 -2.39 -0.02 0.29 16 31 H 0.09 -0.87 7.96 -2.39 -0.02 -0.89 16 32 H 0.07 -0.50 7.96 -2.39 -0.02 -0.52 16 33 H 0.07 -0.49 7.96 -2.39 -0.02 -0.51 16 34 H 0.06 -0.29 7.96 -2.39 -0.02 -0.31 16 35 H 0.07 -0.43 7.96 -2.39 -0.02 -0.45 16 36 H 0.09 -0.98 7.96 -2.39 -0.02 -1.00 16 37 H 0.10 -0.42 7.96 -2.38 -0.02 -0.44 16 38 H 0.13 -1.67 7.96 -2.39 -0.02 -1.69 16 39 H 0.23 -2.97 8.06 -2.91 -0.02 -2.99 16 40 H 0.43 -5.57 8.83 -92.71 -0.82 -6.39 16 41 H 0.13 -1.38 7.65 -2.38 -0.02 -1.40 16 42 H 0.13 -1.37 7.68 -2.39 -0.02 -1.39 16 43 H 0.16 -1.70 6.30 -2.91 -0.02 -1.72 16 44 H 0.16 -1.51 8.06 -2.91 -0.02 -1.53 16 45 H 0.14 -0.52 4.86 -2.91 -0.01 -0.54 16 46 H 0.12 0.10 7.96 -2.38 -0.02 0.08 16 47 H 0.39 -1.41 8.70 -74.06 -0.64 -2.05 16 48 H 0.12 1.09 8.06 -2.91 -0.02 1.07 16 49 H 0.18 2.88 5.92 -2.91 -0.02 2.86 16 Total: 0.00 -32.56 412.07 5.47 -27.09 By element: Atomic # 1 Polarization: -17.47 SS G_CDS: 0.27 Total: -17.20 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: 7.94 Total: 16.78 kcal Atomic # 7 Polarization: -2.43 SS G_CDS: -2.93 Total: -5.35 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -2.40 Total: -14.84 kcal Atomic # 14 Polarization: -9.07 SS G_CDS: 2.60 Total: -6.47 kcal Total: -32.56 5.47 -27.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_4860298.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.297 kcal (2) G-P(sol) polarization free energy of solvation -32.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds