Wall clock time and date at job start Sun Mar 7 2021 10:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35899 * 116.99927 * 2 1 4 4 C 1.38752 * 120.02723 * 0.02562 * 3 2 1 5 5 C 1.38205 * 120.05124 * 179.72751 * 4 3 2 6 6 C 1.38158 * 120.10771 * 0.51027 * 5 4 3 7 7 C 1.50699 * 119.97178 * 179.76737 * 6 5 4 8 8 O 1.42895 * 109.47044 * 254.72591 * 7 6 5 9 9 Si 1.86300 * 109.46944 * 14.72518 * 7 6 5 10 10 H 1.48503 * 109.46942 * 180.02562 * 9 7 6 11 11 H 1.48503 * 109.47276 * 299.99703 * 9 7 6 12 12 H 1.48494 * 109.47372 * 59.99692 * 9 7 6 13 13 C 1.38793 * 120.05268 * 359.49006 * 6 5 4 14 14 O 1.35901 * 120.02560 * 180.27744 * 13 6 5 15 15 C 1.42899 * 117.00001 * 180.02562 * 14 13 6 16 16 C 1.50700 * 109.46910 * 180.02562 * 15 14 13 17 17 O 1.21305 * 120.00112 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99825 * 180.02562 * 16 15 14 19 19 C 1.40762 * 119.99617 * 179.97438 * 18 16 15 20 20 C 1.35763 * 126.07783 * 179.97438 * 19 18 16 21 21 N 1.35811 * 107.56388 * 180.02562 * 20 19 18 22 22 C 1.46494 * 126.05355 * 179.97438 * 21 20 19 23 23 Si 1.86302 * 109.47477 * 89.99387 * 22 21 20 24 24 C 1.86306 * 109.46919 * 60.00010 * 23 22 21 25 25 C 1.86296 * 109.47600 * 179.97438 * 23 22 21 26 26 C 1.86304 * 109.47123 * 300.00316 * 23 22 21 27 27 N 1.40068 * 107.89069 * 359.97438 * 21 20 19 28 28 C 1.30832 * 108.37197 * 359.72069 * 27 21 20 29 29 C 1.38607 * 119.94998 * 0.25711 * 13 6 5 30 30 H 1.09006 * 109.46751 * 60.00091 * 1 2 3 31 31 H 1.08994 * 109.47164 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47009 * 300.00790 * 1 2 3 33 33 H 1.08002 * 119.97624 * 359.97438 * 4 3 2 34 34 H 1.07999 * 119.94536 * 180.27772 * 5 4 3 35 35 H 1.09001 * 109.47358 * 134.71877 * 7 6 5 36 36 H 0.96705 * 114.00010 * 180.02562 * 8 7 6 37 37 H 1.09002 * 109.46859 * 299.99296 * 15 14 13 38 38 H 1.08995 * 109.47299 * 60.00100 * 15 14 13 39 39 H 0.96994 * 120.00265 * 359.97438 * 18 16 15 40 40 H 1.07996 * 126.21625 * 359.97438 * 20 19 18 41 41 H 1.09003 * 109.47426 * 209.99050 * 22 21 20 42 42 H 1.09004 * 109.47479 * 329.99529 * 22 21 20 43 43 H 1.08996 * 109.47392 * 60.00044 * 24 23 22 44 44 H 1.08998 * 109.47287 * 180.02562 * 24 23 22 45 45 H 1.09002 * 109.46932 * 299.99846 * 24 23 22 46 46 H 1.09006 * 109.46440 * 60.00249 * 25 23 22 47 47 H 1.08995 * 109.47629 * 179.97438 * 25 23 22 48 48 H 1.09001 * 109.47073 * 300.00625 * 25 23 22 49 49 H 1.08996 * 109.46945 * 59.99450 * 26 23 22 50 50 H 1.09000 * 109.46915 * 179.97438 * 26 23 22 51 51 H 1.08999 * 109.46824 * 299.99710 * 26 23 22 52 52 H 1.08000 * 125.83356 * 180.25899 * 28 27 21 53 53 H 1.08000 * 120.06005 * 179.97438 * 29 13 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2908 2.3749 0.0005 5 6 1.9177 3.6066 0.0062 6 6 3.2972 3.6821 0.0007 7 6 3.9776 5.0268 0.0017 8 8 4.5040 5.2951 -1.2994 9 14 2.7440 6.3465 0.4569 10 1 3.4143 7.6717 0.4572 11 1 1.6373 6.3525 -0.5333 12 1 2.1969 6.0676 1.8089 13 6 4.0570 2.5206 0.0002 14 8 5.4139 2.5955 0.0005 15 6 6.1319 1.3600 -0.0007 16 6 7.6127 1.6396 0.0005 17 8 8.0138 2.7844 0.0017 18 7 8.4914 0.6176 -0.0008 19 6 9.8746 0.8788 -0.0003 20 6 10.8638 -0.0510 -0.0009 21 7 12.0493 0.6118 0.0005 22 6 13.3798 -0.0013 0.0010 23 14 13.9451 -0.2598 -1.7553 24 6 14.0183 1.3824 -2.6321 25 6 15.6374 -1.0387 -1.7548 26 6 12.7451 -1.3807 -2.6354 27 7 11.7744 1.9852 0.0016 28 6 10.4760 2.1459 -0.0053 29 6 3.4306 1.2841 -0.0002 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 0.2123 2.3184 0.0005 34 1 1.3283 4.5115 0.0112 35 1 4.7899 5.0225 0.7285 36 1 4.9572 6.1463 -1.3725 37 1 5.8701 0.7868 0.8888 38 1 5.8704 0.7886 -0.8912 39 1 8.1708 -0.2978 -0.0021 40 1 10.7320 -1.1229 -0.0016 41 1 14.0819 0.6546 0.5158 42 1 13.3370 -0.9621 0.5140 43 1 14.7203 2.0383 -2.1173 44 1 14.3486 1.2312 -3.6598 45 1 13.0283 1.8385 -2.6325 46 1 15.5949 -1.9994 -1.2416 47 1 15.9680 -1.1903 -2.7823 48 1 16.3392 -0.3825 -1.2400 49 1 11.7552 -0.9246 -2.6356 50 1 13.0757 -1.5315 -3.6630 51 1 12.7023 -2.3415 -2.1223 52 1 9.9561 3.0925 -0.0103 53 1 4.0201 0.3791 -0.0011 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_4974312.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:43:02 Heat of formation + Delta-G solvation = -59.519598 kcal Electronic energy + Delta-G solvation = -33919.364090 eV Core-core repulsion = 29304.177868 eV Total energy + Delta-G solvation = -4615.186222 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 393.172 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.36559 -41.74801 -40.67186 -39.75623 -38.18994 -36.99725 -35.93128 -33.72863 -32.39393 -31.61707 -30.74321 -29.58433 -29.13469 -28.37643 -28.36860 -28.29966 -26.76715 -26.04231 -23.99991 -22.84728 -22.36520 -22.05616 -21.07116 -19.88012 -18.67958 -18.45648 -18.10304 -17.70355 -17.47784 -17.24437 -16.84627 -16.67516 -16.62338 -16.40663 -15.85988 -15.62808 -15.48661 -15.22424 -15.10465 -14.81167 -14.37379 -14.18626 -14.14875 -14.03130 -13.84301 -13.82678 -13.78117 -13.58385 -13.42276 -13.31682 -13.20986 -13.20144 -13.13626 -13.01783 -12.51394 -12.41055 -12.18018 -12.15022 -11.89694 -11.76109 -11.70781 -11.59025 -11.37591 -10.94782 -10.84437 -10.79872 -10.21551 -10.02943 -9.69901 -9.10035 -8.63921 0.18377 0.29832 0.73993 1.16952 1.21383 1.26526 1.45639 1.50463 1.58391 1.70155 1.88016 1.88247 2.05391 2.12604 2.25055 2.53788 2.58179 2.60015 3.51326 3.56572 3.70167 3.77015 3.93110 3.98368 4.00580 4.06538 4.08146 4.20116 4.27793 4.31607 4.37694 4.41358 4.45146 4.58604 4.62524 4.68916 4.70887 4.73398 4.75379 4.78245 4.83685 4.84904 4.87770 4.89262 5.00368 5.07956 5.21882 5.28291 5.44432 5.51491 5.61141 5.66285 5.75615 6.08514 6.13059 6.34829 6.43570 6.69296 6.83728 7.12742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.327 6.327 3 C 0.164 3.836 4 C -0.240 4.240 5 C -0.052 4.052 6 C -0.164 4.164 7 C -0.076 4.076 8 O -0.562 6.562 9 Si 0.984 3.016 10 H -0.260 1.260 11 H -0.254 1.254 12 H -0.252 1.252 13 C 0.180 3.820 14 O -0.299 6.299 15 C 0.040 3.960 16 C 0.512 3.488 17 O -0.551 6.551 18 N -0.620 5.620 19 C -0.024 4.024 20 C 0.036 3.964 21 N -0.340 5.340 22 C -0.190 4.190 23 Si 1.096 2.904 24 C -0.477 4.477 25 C -0.455 4.455 26 C -0.458 4.458 27 N -0.319 5.319 28 C 0.021 3.979 29 C -0.249 4.249 30 H 0.066 0.934 31 H 0.119 0.881 32 H 0.068 0.932 33 H 0.156 0.844 34 H 0.144 0.856 35 H 0.068 0.932 36 H 0.391 0.609 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.432 0.568 40 H 0.224 0.776 41 H 0.102 0.898 42 H 0.134 0.866 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.045 0.955 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.071 0.929 49 H 0.060 0.940 50 H 0.071 0.929 51 H 0.089 0.911 52 H 0.180 0.820 53 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.761 -9.762 1.020 9.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.240 6.240 3 C 0.118 3.882 4 C -0.259 4.259 5 C -0.070 4.070 6 C -0.165 4.165 7 C -0.185 4.185 8 O -0.370 6.370 9 Si 0.806 3.194 10 H -0.184 1.184 11 H -0.178 1.178 12 H -0.176 1.176 13 C 0.134 3.866 14 O -0.211 6.211 15 C -0.038 4.038 16 C 0.299 3.701 17 O -0.428 6.428 18 N -0.269 5.269 19 C -0.129 4.129 20 C -0.113 4.113 21 N -0.122 5.122 22 C -0.353 4.353 23 Si 1.285 2.715 24 C -0.581 4.581 25 C -0.564 4.564 26 C -0.566 4.566 27 N -0.144 5.144 28 C -0.164 4.164 29 C -0.268 4.268 30 H 0.084 0.916 31 H 0.137 0.863 32 H 0.086 0.914 33 H 0.173 0.827 34 H 0.162 0.838 35 H 0.086 0.914 36 H 0.240 0.760 37 H 0.147 0.853 38 H 0.142 0.858 39 H 0.272 0.728 40 H 0.240 0.760 41 H 0.120 0.880 42 H 0.152 0.848 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.064 0.936 46 H 0.104 0.896 47 H 0.092 0.908 48 H 0.090 0.910 49 H 0.079 0.921 50 H 0.090 0.910 51 H 0.108 0.892 52 H 0.197 0.803 53 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.922 -8.360 1.184 8.494 hybrid contribution -0.552 -0.029 -0.044 0.554 sum -1.474 -8.390 1.140 8.594 Atomic orbital electron populations 1.23405 0.76104 1.05772 1.02558 1.86051 1.23655 1.26329 1.87963 1.18838 0.91779 0.84807 0.92820 1.21361 1.01592 0.91281 1.11630 1.20890 0.92387 0.98779 0.94963 1.18801 0.92987 0.92924 1.11811 1.24714 1.04411 1.00766 0.88655 1.86467 1.77342 1.43735 1.29452 0.85278 0.77847 0.76314 0.79965 1.18430 1.17783 1.17604 1.18481 0.81808 0.92977 0.93330 1.86185 1.15188 1.31598 1.88106 1.22661 0.87523 0.86535 1.07093 1.20481 0.88433 0.84849 0.76367 1.90660 1.79989 1.23074 1.49060 1.42321 1.01849 1.10387 1.72340 1.17745 0.84417 0.93150 1.17564 1.22563 0.83625 0.99832 1.05291 1.48295 1.06221 1.03161 1.54541 1.27401 0.82104 1.02213 1.23599 0.78241 0.66760 0.64475 0.62016 1.26536 1.03128 1.19790 1.08606 1.26140 1.16947 1.08042 1.05221 1.26216 1.10741 1.11033 1.08604 1.77395 1.16267 0.95331 1.25371 1.24291 0.90555 0.99606 1.01961 1.20587 0.93271 0.97531 1.15395 0.91568 0.86286 0.91361 0.82655 0.83837 0.91407 0.76017 0.85347 0.85782 0.72834 0.75983 0.87952 0.84822 0.91944 0.91296 0.93596 0.89562 0.90751 0.90967 0.92066 0.91031 0.89175 0.80290 0.82144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 9.81 113.37 1.11 1.03 16 2 O -0.33 -0.58 10.50 -92.41 -0.97 -1.55 16 3 C 0.16 0.57 6.68 22.49 0.15 0.73 16 4 C -0.24 -0.56 9.04 22.38 0.20 -0.36 16 5 C -0.05 -0.23 8.65 22.24 0.19 -0.04 16 6 C -0.16 -1.27 5.31 -19.75 -0.10 -1.37 16 7 C -0.08 -0.50 2.37 71.24 0.17 -0.33 16 8 O -0.56 -4.69 12.86 -148.98 -1.92 -6.61 16 9 Si 0.98 2.33 25.48 68.60 1.75 4.08 16 10 H -0.26 -0.72 7.11 99.48 0.71 -0.02 16 11 H -0.25 -0.72 6.74 99.48 0.67 -0.05 16 12 H -0.25 -0.66 7.11 99.48 0.71 0.04 16 13 C 0.18 1.28 6.66 22.49 0.15 1.43 16 14 O -0.30 -2.44 9.00 -73.40 -0.66 -3.10 16 15 C 0.04 -0.04 5.22 71.24 0.37 0.34 16 16 C 0.51 2.40 7.88 87.66 0.69 3.09 16 17 O -0.55 -8.30 13.66 15.93 0.22 -8.08 16 18 N -0.62 0.83 5.47 -304.04 -1.66 -0.83 16 19 C -0.02 -0.10 6.90 37.62 0.26 0.16 16 20 C 0.04 -0.06 11.44 83.50 0.96 0.89 16 21 N -0.34 -0.70 3.01 -182.93 -0.55 -1.25 16 22 C -0.19 0.98 5.59 127.77 0.71 1.70 16 23 Si 1.10 -7.59 12.79 68.60 0.88 -6.72 16 24 C -0.48 -0.86 8.65 113.37 0.98 0.12 16 25 C -0.45 3.38 8.65 113.37 0.98 4.36 16 26 C -0.46 2.96 8.65 113.37 0.98 3.94 16 27 N -0.32 -3.49 12.56 -56.77 -0.71 -4.20 16 28 C 0.02 0.24 10.84 85.33 0.92 1.17 16 29 C -0.25 -0.80 8.97 22.46 0.20 -0.60 16 30 H 0.07 -0.43 7.66 -2.38 -0.02 -0.44 16 31 H 0.12 -1.03 8.14 -2.39 -0.02 -1.04 16 32 H 0.07 -0.47 7.66 -2.38 -0.02 -0.49 16 33 H 0.16 -0.46 6.29 -2.91 -0.02 -0.48 16 34 H 0.14 0.17 4.87 -2.91 -0.01 0.15 16 35 H 0.07 0.48 7.82 -2.39 -0.02 0.46 16 36 H 0.39 0.08 8.74 -74.05 -0.65 -0.57 16 37 H 0.13 -0.97 7.66 -2.39 -0.02 -0.98 16 38 H 0.12 -0.80 7.66 -2.39 -0.02 -0.82 16 39 H 0.43 -4.72 8.83 -92.71 -0.82 -5.54 16 40 H 0.22 -2.70 8.06 -2.91 -0.02 -2.72 16 41 H 0.10 -0.41 7.96 -2.39 -0.02 -0.43 16 42 H 0.13 -1.59 7.96 -2.38 -0.02 -1.61 16 43 H 0.06 0.18 7.96 -2.39 -0.02 0.16 16 44 H 0.07 0.07 7.96 -2.39 -0.02 0.05 16 45 H 0.04 0.32 7.96 -2.39 -0.02 0.30 16 46 H 0.09 -0.83 7.96 -2.38 -0.02 -0.85 16 47 H 0.07 -0.48 7.96 -2.39 -0.02 -0.49 16 48 H 0.07 -0.48 7.96 -2.39 -0.02 -0.50 16 49 H 0.06 -0.24 7.96 -2.39 -0.02 -0.26 16 50 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 51 H 0.09 -0.90 7.96 -2.39 -0.02 -0.92 16 52 H 0.18 2.85 5.92 -2.91 -0.02 2.83 16 53 H 0.16 -0.42 6.30 -2.91 -0.02 -0.44 16 Total: 0.00 -32.56 440.80 5.51 -27.05 By element: Atomic # 1 Polarization: -15.25 SS G_CDS: 0.21 Total: -15.05 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: 8.93 Total: 16.25 kcal Atomic # 7 Polarization: -3.35 SS G_CDS: -2.93 Total: -6.28 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -3.33 Total: -19.34 kcal Atomic # 14 Polarization: -5.26 SS G_CDS: 2.63 Total: -2.63 kcal Total: -32.56 5.51 -27.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_4974312.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.466 kcal (2) G-P(sol) polarization free energy of solvation -32.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds