Wall clock time and date at job start Sun Mar 7 2021 10:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35996 * 117.00356 * 2 1 4 4 C 1.38530 * 120.06786 * 359.97438 * 3 2 1 5 5 C 1.38287 * 119.99896 * 180.02562 * 4 3 2 6 6 C 1.50694 * 119.92834 * 179.97438 * 5 4 3 7 7 O 1.42901 * 109.47124 * 299.99794 * 6 5 4 8 8 Si 1.86298 * 109.47142 * 179.97438 * 6 5 4 9 9 H 1.48498 * 109.47111 * 60.00107 * 8 6 5 10 10 H 1.48506 * 109.46997 * 179.97438 * 8 6 5 11 11 H 1.48492 * 109.47343 * 299.99795 * 8 6 5 12 12 C 1.38211 * 120.14295 * 359.97162 * 5 4 3 13 13 C 1.38288 * 120.15045 * 359.77134 * 12 5 4 14 14 C 1.38523 * 119.99745 * 0.50535 * 13 12 5 15 15 O 1.35990 * 120.07473 * 179.74203 * 14 13 12 16 16 C 1.42900 * 116.99791 * 359.73129 * 15 14 13 17 17 C 1.50700 * 109.46872 * 179.97438 * 16 15 14 18 18 O 1.21308 * 120.00288 * 0.02562 * 17 16 15 19 19 N 1.34779 * 119.99724 * 179.97438 * 17 16 15 20 20 C 1.40770 * 119.99880 * 180.02562 * 19 17 16 21 21 C 1.35753 * 126.08077 * 179.97438 * 20 19 17 22 22 N 1.35809 * 107.56243 * 179.97438 * 21 20 19 23 23 C 1.46505 * 126.05363 * 179.97438 * 22 21 20 24 24 Si 1.86293 * 109.46974 * 90.00371 * 23 22 21 25 25 C 1.86300 * 109.47364 * 60.00146 * 24 23 22 26 26 C 1.86303 * 109.47318 * 299.99831 * 24 23 22 27 27 C 1.86299 * 109.47027 * 180.02562 * 24 23 22 28 28 N 1.40066 * 107.89332 * 0.23518 * 22 21 20 29 29 C 1.30830 * 108.37046 * 359.60593 * 28 22 21 30 30 H 1.09001 * 109.47149 * 59.99830 * 1 2 3 31 31 H 1.09001 * 109.47077 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47486 * 299.99377 * 1 2 3 33 33 H 1.07997 * 120.00127 * 359.97438 * 4 3 2 34 34 H 1.09007 * 109.47010 * 59.99637 * 6 5 4 35 35 H 0.96700 * 113.99834 * 300.00291 * 7 6 5 36 36 H 1.08003 * 119.92121 * 180.02562 * 12 5 4 37 37 H 1.07998 * 120.00147 * 180.28121 * 13 12 5 38 38 H 1.09003 * 109.47166 * 59.99728 * 16 15 14 39 39 H 1.08999 * 109.47053 * 299.99586 * 16 15 14 40 40 H 0.96996 * 120.00119 * 359.97438 * 19 17 16 41 41 H 1.08002 * 126.21590 * 0.02562 * 21 20 19 42 42 H 1.09002 * 109.47068 * 330.00355 * 23 22 21 43 43 H 1.08998 * 109.47168 * 210.01002 * 23 22 21 44 44 H 1.09001 * 109.46570 * 299.99984 * 25 24 23 45 45 H 1.09001 * 109.47076 * 59.99486 * 25 24 23 46 46 H 1.09000 * 109.47204 * 179.97438 * 25 24 23 47 47 H 1.09000 * 109.47332 * 180.02562 * 26 24 23 48 48 H 1.09002 * 109.47176 * 300.00293 * 26 24 23 49 49 H 1.09004 * 109.46801 * 60.00198 * 26 24 23 50 50 H 1.09001 * 109.47058 * 299.99737 * 27 24 23 51 51 H 1.09002 * 109.47782 * 60.00076 * 27 24 23 52 52 H 1.09000 * 109.47172 * 179.97438 * 27 24 23 53 53 H 1.08000 * 125.83393 * 180.17622 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2933 2.3744 -0.0005 5 6 1.9227 3.6058 -0.0011 6 6 1.1020 4.8696 -0.0022 7 8 0.2781 4.9015 -1.1694 8 14 2.2369 6.3470 -0.0019 9 1 3.0945 6.3127 -1.2137 10 1 1.4280 7.5925 -0.0037 11 1 3.0925 6.3137 1.2112 12 6 3.3028 3.6798 -0.0005 13 6 4.0605 2.5230 0.0054 14 6 3.4363 1.2863 0.0002 15 8 4.1799 0.1477 0.0007 16 6 5.6007 0.3007 0.0008 17 6 6.2522 -1.0582 0.0020 18 8 5.5672 -2.0593 0.0022 19 7 7.5961 -1.1611 0.0017 20 6 8.2047 -2.4304 0.0023 21 6 9.5396 -2.6770 0.0017 22 7 9.7075 -4.0247 0.0032 23 6 10.9894 -4.7339 0.0026 24 14 11.5347 -5.0324 1.7587 25 6 10.2559 -6.0618 2.6396 26 6 11.7287 -3.3998 2.6348 27 6 13.1652 -5.9336 1.7580 28 7 8.4380 -4.6164 -0.0007 29 6 7.5397 -3.6653 0.0041 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 0.2148 2.3193 -0.0014 34 1 0.4727 4.8950 0.8875 35 1 0.7723 4.8814 -2.0003 36 1 3.7907 4.6434 -0.0005 37 1 5.1387 2.5836 0.0105 38 1 5.9068 0.8509 0.8906 39 1 5.9070 0.8501 -0.8894 40 1 8.1438 -0.3606 0.0004 41 1 10.3254 -1.9360 0.0010 42 1 11.7376 -4.1317 -0.5128 43 1 10.8759 -5.6891 -0.5101 44 1 9.3022 -5.5340 2.6400 45 1 10.1424 -7.0170 2.1270 46 1 10.5752 -6.2368 3.6670 47 1 12.0482 -3.5744 3.6622 48 1 12.4769 -2.7975 2.1195 49 1 10.7749 -2.8721 2.6353 50 1 13.0521 -6.8889 1.2453 51 1 13.9133 -5.3311 1.2428 52 1 13.4844 -6.1079 2.7855 53 1 6.4690 -3.8068 0.0055 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_60476.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:47:23 Heat of formation + Delta-G solvation = -60.343114 kcal Electronic energy + Delta-G solvation = -33549.762561 eV Core-core repulsion = 28934.540629 eV Total energy + Delta-G solvation = -4615.221932 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 393.172 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.36978 -41.75753 -40.64019 -39.29384 -38.85602 -36.91928 -35.93958 -33.74000 -32.08861 -31.48536 -30.86178 -29.60040 -29.19098 -28.43767 -28.38440 -28.30684 -26.81147 -26.12022 -23.81804 -22.96994 -22.48095 -22.01216 -21.10526 -19.76042 -18.77912 -18.32747 -18.21014 -17.81286 -17.55074 -17.09226 -16.74445 -16.69006 -16.36781 -16.06761 -15.99102 -15.83318 -15.41185 -15.39652 -15.09556 -14.94722 -14.52390 -14.19431 -14.15705 -14.03638 -13.87012 -13.83380 -13.72511 -13.58654 -13.47338 -13.41560 -13.21341 -13.14042 -13.02170 -12.61705 -12.53721 -12.24975 -12.15680 -12.11330 -12.01811 -11.96814 -11.76797 -11.55886 -11.38469 -10.94720 -10.85159 -10.80409 -10.40007 -10.03861 -9.76865 -8.90667 -8.64522 0.18013 0.27504 0.73730 1.21952 1.22604 1.26537 1.52377 1.57166 1.59296 1.70033 1.87461 1.96943 2.05017 2.12680 2.32510 2.57031 2.57489 2.59001 3.50073 3.52381 3.71586 3.76305 3.87136 3.88551 4.00353 4.04397 4.11679 4.16148 4.27000 4.28094 4.33949 4.38307 4.57121 4.61951 4.67417 4.68276 4.69223 4.69892 4.72697 4.74664 4.83462 4.84721 4.87417 4.88951 5.01039 5.07716 5.11375 5.36979 5.50524 5.59635 5.60751 5.65909 5.74489 5.98016 6.08330 6.40434 6.54240 6.68715 6.72643 7.14647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.335 6.335 3 C 0.078 3.922 4 C -0.149 4.149 5 C -0.118 4.118 6 C -0.082 4.082 7 O -0.555 6.555 8 Si 0.987 3.013 9 H -0.245 1.245 10 H -0.280 1.280 11 H -0.250 1.250 12 C -0.124 4.124 13 C -0.160 4.160 14 C 0.085 3.915 15 O -0.313 6.313 16 C 0.041 3.959 17 C 0.508 3.492 18 O -0.558 6.558 19 N -0.619 5.619 20 C -0.025 4.025 21 C 0.038 3.962 22 N -0.340 5.340 23 C -0.190 4.190 24 Si 1.094 2.906 25 C -0.477 4.477 26 C -0.457 4.457 27 C -0.455 4.455 28 N -0.320 5.320 29 C 0.019 3.981 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.146 0.854 34 H 0.122 0.878 35 H 0.389 0.611 36 H 0.147 0.853 37 H 0.175 0.825 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.434 0.566 41 H 0.226 0.774 42 H 0.135 0.865 43 H 0.101 0.899 44 H 0.044 0.956 45 H 0.061 0.939 46 H 0.068 0.932 47 H 0.071 0.929 48 H 0.090 0.910 49 H 0.061 0.939 50 H 0.071 0.929 51 H 0.086 0.914 52 H 0.074 0.926 53 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.182 7.711 0.092 11.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.033 3.967 4 C -0.168 4.168 5 C -0.119 4.119 6 C -0.191 4.191 7 O -0.362 6.362 8 Si 0.811 3.189 9 H -0.169 1.169 10 H -0.206 1.206 11 H -0.174 1.174 12 C -0.142 4.142 13 C -0.178 4.178 14 C 0.040 3.960 15 O -0.227 6.227 16 C -0.036 4.036 17 C 0.295 3.705 18 O -0.434 6.434 19 N -0.268 5.268 20 C -0.129 4.129 21 C -0.112 4.112 22 N -0.122 5.122 23 C -0.353 4.353 24 Si 1.283 2.717 25 C -0.581 4.581 26 C -0.565 4.565 27 C -0.563 4.563 28 N -0.145 5.145 29 C -0.166 4.166 30 H 0.084 0.916 31 H 0.128 0.872 32 H 0.084 0.916 33 H 0.164 0.836 34 H 0.140 0.860 35 H 0.238 0.762 36 H 0.164 0.836 37 H 0.193 0.807 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.273 0.727 41 H 0.242 0.758 42 H 0.153 0.847 43 H 0.120 0.880 44 H 0.064 0.936 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.090 0.910 48 H 0.109 0.891 49 H 0.080 0.920 50 H 0.090 0.910 51 H 0.105 0.895 52 H 0.093 0.907 53 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 9.038 6.019 0.476 10.869 hybrid contribution -0.702 0.358 -0.376 0.873 sum 8.336 6.377 0.100 10.496 Atomic orbital electron populations 1.23290 0.76762 1.05171 1.02225 1.86192 1.23051 1.26620 1.89047 1.18687 0.89864 0.85687 1.02460 1.21021 1.00701 0.90295 1.04740 1.20216 0.94217 0.95247 1.02182 1.25106 1.00675 1.01386 0.91982 1.86481 1.36579 1.96900 1.16207 0.85154 0.76987 0.75080 0.81697 1.16886 1.20568 1.17422 1.21017 0.92848 0.99010 1.01302 1.21348 1.02219 0.89363 1.04850 1.18553 0.88237 0.86381 1.02869 1.86214 1.18078 1.29030 1.89342 1.22673 0.79452 0.94141 1.07367 1.20647 0.82176 0.91368 0.76266 1.90678 1.63829 1.39723 1.49217 1.42314 1.05462 1.06668 1.72318 1.17751 0.91620 0.86000 1.17566 1.22580 0.96311 0.87075 1.05185 1.48311 1.05247 1.04162 1.54508 1.27408 0.82561 1.01748 1.23612 0.78275 0.64846 0.66537 0.62036 1.26543 1.12839 1.10036 1.08681 1.26199 1.04853 1.16874 1.08569 1.26138 1.16356 1.08602 1.05243 1.77396 0.88803 1.22884 1.25403 1.24277 1.00250 0.90018 1.02064 0.91640 0.87239 0.91606 0.83640 0.86047 0.76192 0.83612 0.80739 0.85098 0.85088 0.72666 0.75768 0.84730 0.88034 0.93633 0.92015 0.91264 0.91000 0.89082 0.91998 0.91010 0.89501 0.90727 0.80564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 9.81 113.37 1.11 1.16 16 2 O -0.33 -3.78 10.28 -79.66 -0.82 -4.59 16 3 C 0.08 0.64 6.70 22.57 0.15 0.79 16 4 C -0.15 -0.53 8.60 22.35 0.19 -0.34 16 5 C -0.12 -0.03 5.39 -19.86 -0.11 -0.13 16 6 C -0.08 0.18 2.82 71.23 0.20 0.38 16 7 O -0.55 0.23 12.77 -148.98 -1.90 -1.67 16 8 Si 0.99 -3.64 25.07 68.60 1.72 -1.92 16 9 H -0.25 1.12 7.11 99.48 0.71 1.83 16 10 H -0.28 -0.17 7.11 99.48 0.71 0.53 16 11 H -0.25 0.91 7.11 99.48 0.71 1.61 16 12 C -0.12 0.26 8.66 22.28 0.19 0.45 16 13 C -0.16 0.31 9.04 22.35 0.20 0.52 16 14 C 0.09 0.49 6.70 22.57 0.15 0.64 16 15 O -0.31 -2.66 9.46 -67.03 -0.63 -3.30 16 16 C 0.04 -0.11 5.22 71.24 0.37 0.26 16 17 C 0.51 2.28 7.88 87.66 0.69 2.97 16 18 O -0.56 -9.15 13.66 15.92 0.22 -8.93 16 19 N -0.62 1.28 5.47 -304.03 -1.66 -0.38 16 20 C -0.02 -0.10 6.90 37.62 0.26 0.16 16 21 C 0.04 -0.08 11.44 83.50 0.96 0.87 16 22 N -0.34 -0.68 3.01 -182.93 -0.55 -1.23 16 23 C -0.19 1.00 5.59 127.77 0.71 1.72 16 24 Si 1.09 -7.73 12.79 68.60 0.88 -6.85 16 25 C -0.48 -0.88 8.65 113.37 0.98 0.10 16 26 C -0.46 3.18 8.65 113.37 0.98 4.16 16 27 C -0.45 3.45 8.65 113.37 0.98 4.43 16 28 N -0.32 -3.62 12.56 -56.77 -0.71 -4.33 16 29 C 0.02 0.23 10.84 85.33 0.92 1.15 16 30 H 0.07 0.01 7.66 -2.39 -0.02 -0.01 16 31 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 32 H 0.07 0.00 7.66 -2.39 -0.02 -0.02 16 33 H 0.15 0.24 6.30 -2.91 -0.02 0.22 16 34 H 0.12 -0.40 7.96 -2.38 -0.02 -0.42 16 35 H 0.39 -2.61 8.70 -74.06 -0.64 -3.26 16 36 H 0.15 -0.96 4.86 -2.91 -0.01 -0.97 16 37 H 0.18 -1.82 6.30 -2.91 -0.02 -1.84 16 38 H 0.13 -1.31 7.65 -2.39 -0.02 -1.33 16 39 H 0.13 -1.32 7.68 -2.39 -0.02 -1.34 16 40 H 0.43 -5.39 8.83 -92.71 -0.82 -6.21 16 41 H 0.23 -2.91 8.06 -2.91 -0.02 -2.94 16 42 H 0.13 -1.64 7.96 -2.39 -0.02 -1.66 16 43 H 0.10 -0.40 7.96 -2.39 -0.02 -0.42 16 44 H 0.04 0.32 7.96 -2.39 -0.02 0.30 16 45 H 0.06 0.19 7.96 -2.39 -0.02 0.17 16 46 H 0.07 0.07 7.96 -2.39 -0.02 0.05 16 47 H 0.07 -0.42 7.96 -2.39 -0.02 -0.43 16 48 H 0.09 -0.97 7.96 -2.39 -0.02 -0.98 16 49 H 0.06 -0.28 7.96 -2.38 -0.02 -0.30 16 50 H 0.07 -0.48 7.96 -2.39 -0.02 -0.50 16 51 H 0.09 -0.86 7.96 -2.39 -0.02 -0.88 16 52 H 0.07 -0.49 7.96 -2.39 -0.02 -0.51 16 53 H 0.18 3.01 5.92 -2.91 -0.02 2.99 16 Total: 0.00 -35.95 441.25 5.73 -30.22 By element: Atomic # 1 Polarization: -16.55 SS G_CDS: 0.25 Total: -16.30 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: 8.96 Total: 19.29 kcal Atomic # 7 Polarization: -3.02 SS G_CDS: -2.93 Total: -5.94 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -3.14 Total: -18.49 kcal Atomic # 14 Polarization: -11.37 SS G_CDS: 2.60 Total: -8.77 kcal Total: -35.95 5.73 -30.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_60476.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.120 kcal (2) G-P(sol) polarization free energy of solvation -35.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds