Wall clock time and date at job start Sun Mar 7 2021 10:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86303 * 109.47161 * 2 1 4 4 C 1.86299 * 109.47217 * 119.99499 * 2 1 3 5 5 C 1.86293 * 109.47364 * 239.99588 * 2 1 3 6 6 N 1.46505 * 109.46974 * 60.00146 * 5 2 1 7 7 C 1.35809 * 126.05363 * 90.00371 * 6 5 2 8 8 C 1.35753 * 107.56243 * 179.97438 * 7 6 5 9 9 N 1.40770 * 126.08077 * 179.97438 * 8 7 6 10 10 C 1.34779 * 119.99880 * 179.97438 * 9 8 7 11 11 O 1.21308 * 119.99988 * 359.97438 * 10 9 8 12 12 C 1.50700 * 119.99724 * 180.02562 * 10 9 8 13 13 O 1.42900 * 109.46872 * 179.97438 * 12 10 9 14 14 C 1.35918 * 116.99940 * 179.97438 * 13 12 10 15 15 C 1.38676 * 120.05561 * 359.73194 * 14 13 12 16 16 C 1.38194 * 119.94922 * 179.71737 * 15 14 13 17 17 C 1.38236 * 120.07038 * 0.53152 * 16 15 14 18 18 C 1.50707 * 119.94017 * 179.74180 * 17 16 15 19 19 O 1.42906 * 109.46799 * 120.01910 * 18 17 16 20 20 Si 1.86300 * 109.47001 * 0.02562 * 18 17 16 21 21 H 1.48503 * 109.47095 * 59.99676 * 20 18 17 22 22 H 1.48499 * 109.47206 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47129 * 299.99708 * 20 18 17 24 24 C 1.38283 * 120.12151 * 359.76239 * 17 16 15 25 25 C 1.38195 * 120.04400 * 359.96349 * 24 17 16 26 26 Br 1.89101 * 120.03536 * 180.02562 * 25 24 17 27 27 C 1.40255 * 107.84084 * 359.97438 * 8 7 6 28 28 N 1.30830 * 108.33140 * 359.75546 * 27 8 7 29 29 H 1.09001 * 109.46570 * 60.00396 * 1 2 3 30 30 H 1.09001 * 109.47076 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47204 * 300.00331 * 1 2 3 32 32 H 1.09000 * 109.47332 * 59.99747 * 3 2 1 33 33 H 1.09002 * 109.47176 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.46801 * 299.99758 * 3 2 1 35 35 H 1.09001 * 109.47058 * 60.00032 * 4 2 1 36 36 H 1.09002 * 109.47782 * 180.02562 * 4 2 1 37 37 H 1.09000 * 109.47172 * 300.00189 * 4 2 1 38 38 H 1.09002 * 109.47236 * 180.02562 * 5 2 1 39 39 H 1.08998 * 109.47688 * 299.99834 * 5 2 1 40 40 H 1.08002 * 126.22167 * 359.93915 * 7 6 5 41 41 H 0.96996 * 120.00001 * 0.02562 * 9 8 7 42 42 H 1.09003 * 109.47022 * 299.99777 * 12 10 9 43 43 H 1.08999 * 109.47369 * 60.00024 * 12 10 9 44 44 H 1.08001 * 120.02561 * 359.97438 * 15 14 13 45 45 H 1.08000 * 119.96211 * 180.27266 * 16 15 14 46 46 H 1.08995 * 109.47213 * 240.01979 * 18 17 16 47 47 H 0.96700 * 113.99778 * 299.99953 * 19 18 17 48 48 H 1.08000 * 119.97976 * 179.97438 * 24 17 16 49 49 H 1.08000 * 125.83430 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8781 1.5212 5 6 2.4841 -0.8783 -1.5210 6 7 1.9957 -0.1877 -2.7172 7 6 2.6259 0.8229 -3.3699 8 6 1.8455 1.1808 -4.4215 9 7 2.1293 2.1928 -5.3579 10 6 1.2637 2.4462 -6.3594 11 8 0.2402 1.8019 -6.4541 12 6 1.5678 3.5292 -7.3623 13 8 0.5081 3.6046 -8.3179 14 6 0.6270 4.5381 -9.2987 15 6 1.7376 5.3677 -9.3371 16 6 1.8590 6.3120 -10.3387 17 6 0.8695 6.4378 -11.2957 18 6 1.0022 7.4726 -12.3833 19 8 1.0047 6.8263 -13.6579 20 14 2.5972 8.4086 -12.1586 21 1 3.7404 7.4636 -12.2323 22 1 2.7283 9.4279 -13.2306 23 1 2.5948 9.0802 -10.8341 24 6 -0.2421 5.6162 -11.2568 25 6 -0.3658 4.6664 -10.2606 26 35 -1.8857 3.5425 -10.2080 27 6 0.7061 0.3630 -4.4090 28 7 0.7996 -0.4574 -3.3942 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 2.1207 2.2704 0.8899 33 1 3.5740 1.7565 0.0005 34 1 2.1207 2.2703 -0.8901 35 1 2.1207 -1.9058 1.5213 36 1 3.5740 -0.8777 1.5215 37 1 2.1207 -0.3642 2.4111 38 1 3.5741 -0.8787 -1.5207 39 1 2.1208 -1.9060 -1.5210 40 1 3.5750 1.2625 -3.1010 41 1 2.9482 2.7072 -5.2829 42 1 1.6619 4.4853 -6.8472 43 1 2.5022 3.2987 -7.8739 44 1 2.5090 5.2730 -8.5872 45 1 2.7260 6.9553 -10.3713 46 1 0.1631 8.1662 -12.3293 47 1 1.7262 6.1935 -13.7766 48 1 -1.0140 5.7168 -12.0054 49 1 -0.1076 0.4015 -5.1181 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608520_6201210.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:51:45 Heat of formation + Delta-G solvation = -21.747721 kcal Electronic energy + Delta-G solvation = -31124.274880 eV Core-core repulsion = 26645.128377 eV Total energy + Delta-G solvation = -4479.146502 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 441.068 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.33566 -41.63859 -40.45302 -39.13553 -37.29149 -35.90254 -33.76849 -33.56971 -32.02299 -31.07776 -30.32977 -29.77121 -29.35188 -28.59409 -28.45990 -26.94298 -26.33415 -24.21000 -22.98096 -22.44579 -22.06593 -21.06330 -19.67529 -18.77680 -18.29650 -17.98884 -17.65941 -17.17662 -16.83829 -16.51381 -16.38182 -16.19080 -15.87411 -15.55823 -15.36301 -15.11264 -14.95773 -14.58316 -14.39149 -14.33829 -14.22454 -13.98939 -13.97525 -13.85595 -13.80901 -13.73450 -13.56382 -13.43740 -13.27557 -13.18970 -12.43847 -12.38878 -12.35789 -12.16674 -12.15978 -11.80550 -11.75909 -11.67702 -11.39179 -11.06613 -11.03930 -10.95849 -10.88198 -10.51194 -10.04691 -9.97059 -9.33479 -8.63815 -0.10316 0.06321 0.70018 0.72252 1.06698 1.09858 1.27585 1.33215 1.40161 1.46888 1.51439 1.65866 1.82456 1.91263 2.11863 2.33578 2.38742 2.42505 3.29734 3.35319 3.50321 3.57291 3.62663 3.67324 3.76023 3.76269 3.84004 4.00839 4.23727 4.29155 4.45805 4.48264 4.53602 4.55513 4.56082 4.58544 4.59728 4.62607 4.71493 4.75406 4.76202 4.78654 4.89515 5.08298 5.15229 5.30239 5.37188 5.39929 5.55982 5.87427 5.96057 5.99022 6.26814 6.47528 6.77919 7.04165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.447 4.447 2 Si 1.019 2.981 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.169 4.169 6 N -0.343 5.343 7 C 0.017 3.983 8 C -0.005 4.005 9 N -0.639 5.639 10 C 0.516 3.484 11 O -0.495 6.495 12 C 0.042 3.958 13 O -0.273 6.273 14 C 0.161 3.839 15 C -0.200 4.200 16 C -0.069 4.069 17 C -0.152 4.152 18 C -0.076 4.076 19 O -0.537 6.537 20 Si 0.948 3.052 21 H -0.251 1.251 22 H -0.251 1.251 23 H -0.250 1.250 24 C -0.021 4.021 25 C -0.122 4.122 26 Br -0.023 7.023 27 C 0.048 3.952 28 N -0.280 5.280 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.177 0.823 41 H 0.411 0.589 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.140 0.860 45 H 0.130 0.870 46 H 0.121 0.879 47 H 0.377 0.623 48 H 0.147 0.853 49 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.408 3.515 3.616 9.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.555 4.555 2 Si 1.213 2.787 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.335 4.335 6 N -0.126 5.126 7 C -0.131 4.131 8 C -0.110 4.110 9 N -0.286 5.286 10 C 0.301 3.699 11 O -0.367 6.367 12 C -0.037 4.037 13 O -0.184 6.184 14 C 0.112 3.888 15 C -0.219 4.219 16 C -0.087 4.087 17 C -0.154 4.154 18 C -0.187 4.187 19 O -0.342 6.342 20 Si 0.770 3.230 21 H -0.174 1.174 22 H -0.175 1.175 23 H -0.174 1.174 24 C -0.041 4.041 25 C -0.202 4.202 26 Br 0.062 6.938 27 C -0.138 4.138 28 N -0.103 5.103 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.117 0.883 39 H 0.124 0.876 40 H 0.194 0.806 41 H 0.246 0.754 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.158 0.842 45 H 0.147 0.853 46 H 0.138 0.862 47 H 0.224 0.776 48 H 0.164 0.836 49 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 6.674 2.270 4.290 8.253 hybrid contribution 1.638 0.656 -0.305 1.790 sum 8.312 2.927 3.985 9.671 Atomic orbital electron populations 1.26074 1.20036 1.04858 1.04525 0.79379 0.68125 0.67077 0.64077 1.26126 1.06109 1.18624 1.04898 1.26097 1.06374 1.08355 1.14987 1.26971 1.04453 1.05214 0.96863 1.48004 1.15781 1.26738 1.22056 1.21858 1.00124 0.95743 0.95398 1.17580 0.98746 0.98758 0.95881 1.42466 1.23925 1.35699 1.26519 1.19918 0.83874 0.84616 0.81503 1.90699 1.25102 1.48450 1.72495 1.22450 0.91371 0.99358 0.90558 1.86281 1.43350 1.52329 1.36430 1.18616 0.93275 0.88736 0.88132 1.21141 0.98742 0.99425 1.02624 1.20958 0.97812 0.96606 0.93345 1.20252 0.95666 1.00489 0.98972 1.24941 1.13045 0.97537 0.83164 1.86536 1.55226 1.60697 1.31759 0.85715 0.75928 0.80076 0.81232 1.17424 1.17491 1.17356 1.20885 0.97211 0.91071 0.94950 1.21177 0.96191 1.02852 1.00012 1.96822 1.34269 1.64058 1.98622 1.24495 0.98926 0.93180 0.97233 1.77487 1.01323 1.23047 1.08452 0.90994 0.91004 0.91202 0.90718 0.91121 0.91125 0.90835 0.90970 0.90553 0.88276 0.87633 0.80620 0.75410 0.88229 0.88258 0.84192 0.85251 0.86153 0.77567 0.83559 0.77868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.13 8.65 101.05 0.87 1.01 16 2 Si 1.02 -3.36 12.79 -169.99 -2.17 -5.54 16 3 C -0.45 1.22 8.65 101.05 0.87 2.09 16 4 C -0.45 1.39 8.65 101.05 0.87 2.27 16 5 C -0.17 0.37 5.59 59.85 0.33 0.71 16 6 N -0.34 -0.27 3.01 -9.17 -0.03 -0.30 16 7 C 0.02 -0.01 11.44 -16.68 -0.19 -0.20 16 8 C -0.01 -0.01 6.90 -83.88 -0.58 -0.59 16 9 N -0.64 0.97 5.47 -10.03 -0.05 0.92 16 10 C 0.52 0.38 7.88 -10.98 -0.09 0.30 16 11 O -0.50 -2.64 13.66 -14.37 -0.20 -2.83 16 12 C 0.04 -0.09 5.22 36.01 0.19 0.10 16 13 O -0.27 -0.53 9.01 -39.39 -0.35 -0.88 16 14 C 0.16 0.19 6.68 -39.20 -0.26 -0.07 16 15 C -0.20 0.28 9.04 -39.44 -0.36 -0.08 16 16 C -0.07 0.10 8.66 -39.60 -0.34 -0.25 16 17 C -0.15 0.10 5.39 -104.60 -0.56 -0.47 16 18 C -0.08 0.12 2.82 36.01 0.10 0.22 16 19 O -0.54 0.33 12.77 -35.23 -0.45 -0.12 16 20 Si 0.95 -1.84 25.07 -169.99 -4.26 -6.10 16 21 H -0.25 0.49 7.11 56.52 0.40 0.90 16 22 H -0.25 0.05 7.11 56.52 0.40 0.45 16 23 H -0.25 0.41 7.11 56.52 0.40 0.81 16 24 C -0.02 -0.01 9.35 -39.58 -0.37 -0.38 16 25 C -0.12 -0.26 6.24 -39.38 -0.25 -0.50 16 26 Br -0.02 -0.08 33.16 -68.01 -2.26 -2.34 16 27 C 0.05 0.19 10.84 -17.22 -0.19 0.01 16 28 N -0.28 -1.14 12.56 30.70 0.39 -0.75 16 29 H 0.07 0.12 7.96 -51.93 -0.41 -0.29 16 30 H 0.07 0.00 7.96 -51.93 -0.41 -0.41 16 31 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 32 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 33 H 0.07 -0.26 7.96 -51.93 -0.41 -0.67 16 34 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 35 H 0.07 -0.22 7.96 -51.93 -0.41 -0.63 16 36 H 0.07 -0.26 7.96 -51.93 -0.41 -0.67 16 37 H 0.08 -0.21 7.96 -51.93 -0.41 -0.62 16 38 H 0.10 -0.44 7.96 -51.93 -0.41 -0.86 16 39 H 0.11 -0.21 7.96 -51.93 -0.41 -0.62 16 40 H 0.18 -0.80 8.06 -52.49 -0.42 -1.22 16 41 H 0.41 -2.34 8.83 -40.82 -0.36 -2.70 16 42 H 0.10 -0.50 7.65 -51.93 -0.40 -0.90 16 43 H 0.10 -0.50 7.68 -51.93 -0.40 -0.89 16 44 H 0.14 -0.64 6.30 -52.49 -0.33 -0.97 16 45 H 0.13 -0.41 4.87 -52.49 -0.26 -0.66 16 46 H 0.12 -0.27 7.96 -51.93 -0.41 -0.69 16 47 H 0.38 -1.42 8.70 45.56 0.40 -1.02 16 48 H 0.15 0.02 8.06 -52.49 -0.42 -0.40 16 49 H 0.20 1.05 5.92 -52.49 -0.31 0.74 16 LS Contribution 432.42 15.07 6.52 6.52 Total: 0.00 -11.14 432.42 -9.07 -20.21 By element: Atomic # 1 Polarization: -6.67 SS G_CDS: -6.26 Total: -12.93 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 0.06 Total: 4.15 kcal Atomic # 7 Polarization: -0.44 SS G_CDS: 0.30 Total: -0.13 kcal Atomic # 8 Polarization: -2.83 SS G_CDS: -1.00 Total: -3.83 kcal Atomic # 14 Polarization: -5.21 SS G_CDS: -6.43 Total: -11.64 kcal Atomic # 35 Polarization: -0.08 SS G_CDS: -2.26 Total: -2.34 kcal Total LS contribution 6.52 Total: 6.52 kcal Total: -11.14 -9.07 -20.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_6201210.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.541 kcal (2) G-P(sol) polarization free energy of solvation -11.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds