Wall clock time and date at job start Sun Mar 7 2021 10:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86303 * 109.47075 * 2 1 4 4 C 1.86301 * 109.46908 * 240.00452 * 2 1 3 5 5 C 1.86292 * 109.47571 * 120.00185 * 2 1 3 6 6 N 1.46504 * 109.47273 * 59.99660 * 5 2 1 7 7 C 1.35837 * 126.05147 * 90.00113 * 6 5 2 8 8 C 1.35764 * 107.55727 * 180.02562 * 7 6 5 9 9 N 1.40713 * 126.08334 * 180.02562 * 8 7 6 10 10 C 1.34777 * 120.00631 * 180.02562 * 9 8 7 11 11 O 1.21722 * 119.99494 * 359.97438 * 10 9 8 12 12 C 1.46663 * 120.00616 * 180.02562 * 10 9 8 13 13 C 1.37875 * 126.23683 * 180.02562 * 12 10 9 14 14 C 1.39848 * 107.08580 * 179.97438 * 13 12 10 15 15 C 1.35440 * 107.86502 * 359.73549 * 14 13 12 16 16 C 1.50704 * 125.56230 * 180.29563 * 15 14 13 17 17 O 1.42899 * 109.47069 * 120.16140 * 16 15 14 18 18 Si 1.86292 * 109.47240 * 0.15572 * 16 15 14 19 19 H 1.48507 * 109.46885 * 60.00329 * 18 16 15 20 20 H 1.48496 * 109.47313 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47757 * 300.00226 * 18 16 15 22 22 N 1.35555 * 108.87394 * 0.43495 * 15 14 13 23 23 C 1.40261 * 107.83866 * 0.26425 * 8 7 6 24 24 N 1.30841 * 108.33860 * 359.55207 * 23 8 7 25 25 H 1.09008 * 109.47009 * 299.99700 * 1 2 3 26 26 H 1.08993 * 109.47336 * 59.99730 * 1 2 3 27 27 H 1.08995 * 109.47067 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47171 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47089 * 300.00320 * 3 2 1 30 30 H 1.08993 * 109.47357 * 60.00172 * 3 2 1 31 31 H 1.09001 * 109.46952 * 299.99257 * 4 2 1 32 32 H 1.09003 * 109.47354 * 59.99620 * 4 2 1 33 33 H 1.09005 * 109.47121 * 179.97438 * 4 2 1 34 34 H 1.09008 * 109.47047 * 300.00091 * 5 2 1 35 35 H 1.09005 * 109.47355 * 179.97438 * 5 2 1 36 36 H 1.08001 * 126.22238 * 0.03882 * 7 6 5 37 37 H 0.97003 * 119.99849 * 359.97438 * 9 8 7 38 38 H 1.07995 * 126.45226 * 359.97438 * 13 12 10 39 39 H 1.08003 * 126.06198 * 180.02562 * 14 13 12 40 40 H 1.09003 * 109.46982 * 240.15596 * 16 15 14 41 41 H 0.96700 * 113.99579 * 299.99575 * 17 16 15 42 42 H 0.97001 * 125.68311 * 179.83248 * 22 15 14 43 43 H 1.08000 * 125.83656 * 179.74065 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4839 -0.8781 -1.5212 5 6 2.4841 -0.8782 1.5210 6 7 1.9958 -2.2595 1.5211 7 6 2.6259 -3.3302 0.9719 8 6 1.8449 -4.4197 1.1868 9 7 2.1287 -5.7363 0.7793 10 6 1.2620 -6.7299 1.0586 11 8 0.2339 -6.4884 1.6638 12 6 1.5581 -8.1023 0.6343 13 6 0.7669 -9.2106 0.8500 14 6 1.4276 -10.3041 0.2811 15 6 2.5821 -9.8536 -0.2653 16 6 3.5980 -10.6995 -0.9889 17 8 3.7492 -10.2217 -2.3271 18 14 3.0202 -12.4703 -1.0232 19 1 1.7158 -12.5517 -1.7283 20 1 4.0208 -13.3037 -1.7368 21 1 2.8630 -12.9669 0.3675 22 7 2.6763 -8.5182 -0.0523 23 6 0.7021 -3.9986 1.8825 24 7 0.7961 -2.7097 2.0868 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.5740 1.7565 -0.0005 29 1 2.1206 2.2703 -0.8900 30 1 2.1207 2.2703 0.8899 31 1 2.1207 -1.9058 -1.5212 32 1 2.1205 -0.3643 -2.4112 33 1 3.5740 -0.8777 -1.5215 34 1 2.1208 -0.3644 2.4111 35 1 3.5741 -0.8786 1.5207 36 1 3.5757 -3.3173 0.4580 37 1 2.9478 -5.9286 0.2967 38 1 -0.1838 -9.2306 1.3619 39 1 1.0769 -11.3255 0.2742 40 1 4.5554 -10.6397 -0.4714 41 1 2.9347 -10.2461 -2.8478 42 1 3.4078 -7.9496 -0.3396 43 1 -0.1145 -4.6308 2.1985 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608520_6580494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:52:15 Heat of formation + Delta-G solvation = 19.209377 kcal Electronic energy + Delta-G solvation = -24331.702638 eV Core-core repulsion = 20731.170212 eV Total energy + Delta-G solvation = -3600.532426 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.64200 -42.09724 -40.01579 -37.82762 -35.91623 -33.70049 -32.29178 -31.54067 -30.30250 -29.69513 -28.59587 -28.45414 -27.51526 -26.39857 -23.81157 -22.42606 -21.97981 -21.33468 -20.97778 -19.64024 -18.44146 -18.09019 -16.84628 -16.75526 -16.54968 -16.35600 -15.86638 -15.50865 -15.28472 -14.98819 -14.77115 -14.57848 -14.37619 -14.32482 -14.10511 -14.03853 -13.94346 -13.81156 -13.72621 -13.56240 -13.42504 -13.26312 -13.17723 -12.41260 -12.19919 -12.19007 -11.93634 -11.66224 -11.36984 -11.11194 -11.05189 -10.94259 -10.77171 -10.10157 -10.02372 -9.35416 -8.57188 0.24904 0.82979 0.95495 1.27134 1.40423 1.44028 1.48377 1.55932 1.66656 1.79196 1.82622 1.91296 2.04974 2.18837 2.40246 2.51102 3.24335 3.50434 3.63371 3.73198 3.86889 4.20463 4.22405 4.27399 4.37406 4.47248 4.54882 4.57264 4.59867 4.61338 4.66565 4.73395 4.76456 4.79940 4.96279 5.04529 5.13158 5.31514 5.38541 5.56945 5.57164 5.78764 5.91768 6.01304 6.17632 6.30714 6.38070 6.80915 7.10518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.446 4.446 2 Si 1.020 2.980 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.169 4.169 6 N -0.343 5.343 7 C 0.015 3.985 8 C -0.004 4.004 9 N -0.644 5.644 10 C 0.592 3.408 11 O -0.513 6.513 12 C -0.049 4.049 13 C -0.092 4.092 14 C -0.207 4.207 15 C 0.024 3.976 16 C -0.068 4.068 17 O -0.542 6.542 18 Si 0.977 3.023 19 H -0.247 1.247 20 H -0.253 1.253 21 H -0.246 1.246 22 N -0.523 5.523 23 C 0.049 3.951 24 N -0.280 5.280 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.175 0.825 37 H 0.403 0.597 38 H 0.154 0.846 39 H 0.147 0.853 40 H 0.120 0.880 41 H 0.381 0.619 42 H 0.417 0.583 43 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.973 0.131 -3.437 6.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.555 4.555 2 Si 1.214 2.786 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.335 4.335 6 N -0.126 5.126 7 C -0.134 4.134 8 C -0.108 4.108 9 N -0.288 5.288 10 C 0.381 3.619 11 O -0.388 6.388 12 C -0.162 4.162 13 C -0.119 4.119 14 C -0.231 4.231 15 C -0.094 4.094 16 C -0.178 4.178 17 O -0.347 6.347 18 Si 0.797 3.203 19 H -0.170 1.170 20 H -0.177 1.177 21 H -0.170 1.170 22 N -0.119 5.119 23 C -0.137 4.137 24 N -0.103 5.103 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.192 0.808 37 H 0.237 0.763 38 H 0.172 0.828 39 H 0.165 0.835 40 H 0.138 0.862 41 H 0.229 0.771 42 H 0.255 0.745 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 4.188 0.783 -2.291 4.838 hybrid contribution 0.995 -0.110 -0.758 1.256 sum 5.183 0.674 -3.049 6.051 Atomic orbital electron populations 1.26068 1.20006 1.04942 1.04435 0.79373 0.68142 0.66374 0.64732 1.26096 1.06368 1.18231 1.05109 1.26131 1.06102 1.08279 1.15267 1.26971 1.04433 0.83202 1.18886 1.47989 1.15635 1.06365 1.42594 1.21855 1.00179 0.86547 1.04805 1.17601 0.98683 0.84405 1.10159 1.42598 1.23640 1.05104 1.57456 1.16971 0.83198 0.82461 0.79292 1.90761 1.25459 1.82211 1.40340 1.20267 0.92187 0.94155 1.09633 1.21326 0.99837 0.89821 1.00885 1.20738 0.95871 0.99929 1.06574 1.21120 0.99231 0.84082 1.04948 1.24907 1.01276 1.07861 0.83784 1.86509 1.38427 1.87868 1.21934 0.85265 0.80441 0.72537 0.82082 1.17018 1.17653 1.16955 1.41925 1.18327 1.08193 1.43499 1.24488 0.98854 0.91776 0.98624 1.77476 1.01120 1.12231 1.19472 0.91003 0.91209 0.90977 0.90985 0.90562 0.90838 0.91151 0.90718 0.91145 0.87633 0.88312 0.80758 0.76275 0.82790 0.83534 0.86174 0.77086 0.74497 0.77793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.06 8.65 101.05 0.87 0.94 16 2 Si 1.02 -3.09 12.79 -169.99 -2.17 -5.26 16 3 C -0.45 1.29 8.65 101.05 0.87 2.16 16 4 C -0.45 1.03 8.65 101.05 0.87 1.91 16 5 C -0.17 0.31 5.59 59.85 0.33 0.65 16 6 N -0.34 -0.42 3.01 -9.16 -0.03 -0.45 16 7 C 0.01 0.00 11.44 -16.66 -0.19 -0.19 16 8 C 0.00 -0.01 6.90 -83.90 -0.58 -0.59 16 9 N -0.64 -0.13 5.47 -11.22 -0.06 -0.19 16 10 C 0.59 1.49 7.76 -12.86 -0.10 1.39 16 11 O -0.51 -2.92 14.03 5.17 0.07 -2.85 16 12 C -0.05 -0.05 7.05 -81.98 -0.58 -0.63 16 13 C -0.09 -0.13 10.65 -39.11 -0.42 -0.55 16 14 C -0.21 0.00 9.32 -39.98 -0.37 -0.37 16 15 C 0.02 -0.03 6.47 -81.94 -0.53 -0.56 16 16 C -0.07 0.17 3.08 36.01 0.11 0.28 16 17 O -0.54 1.09 12.88 -35.23 -0.45 0.63 16 18 Si 0.98 -2.22 25.82 -169.99 -4.39 -6.61 16 19 H -0.25 0.44 7.11 56.52 0.40 0.85 16 20 H -0.25 0.21 7.11 56.52 0.40 0.61 16 21 H -0.25 0.35 7.11 56.52 0.40 0.75 16 22 N -0.52 0.76 5.99 -5.70 -0.03 0.72 16 23 C 0.05 0.21 10.83 -17.21 -0.19 0.03 16 24 N -0.28 -1.21 12.56 30.71 0.39 -0.82 16 25 H 0.07 0.01 7.96 -51.92 -0.41 -0.41 16 26 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 27 H 0.07 0.13 7.96 -51.93 -0.41 -0.28 16 28 H 0.07 -0.24 7.96 -51.93 -0.41 -0.65 16 29 H 0.08 -0.19 7.96 -51.93 -0.41 -0.61 16 30 H 0.07 -0.20 7.96 -51.93 -0.41 -0.62 16 31 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 32 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 33 H 0.07 -0.22 7.96 -51.93 -0.41 -0.64 16 34 H 0.11 -0.18 7.96 -51.92 -0.41 -0.60 16 35 H 0.10 -0.40 7.96 -51.93 -0.41 -0.81 16 36 H 0.18 -0.64 8.06 -52.49 -0.42 -1.06 16 37 H 0.40 -1.33 7.95 -40.82 -0.32 -1.66 16 38 H 0.15 0.17 8.06 -52.49 -0.42 -0.25 16 39 H 0.15 -0.21 6.17 -52.48 -0.32 -0.54 16 40 H 0.12 -0.43 7.96 -51.93 -0.41 -0.84 16 41 H 0.38 -1.81 8.70 45.56 0.40 -1.41 16 42 H 0.42 -1.68 8.19 -40.82 -0.33 -2.02 16 43 H 0.21 1.06 5.91 -52.49 -0.31 0.75 16 LS Contribution 367.54 15.07 5.54 5.54 Total: 0.00 -9.22 367.54 -6.53 -15.75 By element: Atomic # 1 Polarization: -5.43 SS G_CDS: -5.50 Total: -10.93 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 0.11 Total: 4.47 kcal Atomic # 7 Polarization: -1.00 SS G_CDS: 0.26 Total: -0.74 kcal Atomic # 8 Polarization: -1.84 SS G_CDS: -0.38 Total: -2.22 kcal Atomic # 14 Polarization: -5.31 SS G_CDS: -6.56 Total: -11.88 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -9.22 -6.53 -15.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_6580494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.960 kcal (2) G-P(sol) polarization free energy of solvation -9.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds