Wall clock time and date at job start Sun Mar 7 2021 10:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86303 * 109.47075 * 2 1 4 4 C 1.86301 * 109.46908 * 240.00452 * 2 1 3 5 5 C 1.86292 * 109.47571 * 120.00185 * 2 1 3 6 6 N 1.46504 * 109.47273 * 59.99660 * 5 2 1 7 7 C 1.35837 * 126.05147 * 90.00113 * 6 5 2 8 8 C 1.35764 * 107.55727 * 180.02562 * 7 6 5 9 9 N 1.40713 * 126.08334 * 180.02562 * 8 7 6 10 10 C 1.34777 * 120.00631 * 180.02562 * 9 8 7 11 11 O 1.21722 * 119.99494 * 359.97438 * 10 9 8 12 12 C 1.46663 * 120.00616 * 180.02562 * 10 9 8 13 13 C 1.37875 * 126.23683 * 180.02562 * 12 10 9 14 14 C 1.39848 * 107.08580 * 179.97438 * 13 12 10 15 15 C 1.35440 * 107.86502 * 359.73549 * 14 13 12 16 16 C 1.50704 * 125.56230 * 180.29563 * 15 14 13 17 17 O 1.42899 * 109.47069 * 120.16140 * 16 15 14 18 18 Si 1.86292 * 109.47240 * 0.15572 * 16 15 14 19 19 H 1.48507 * 109.46885 * 60.00329 * 18 16 15 20 20 H 1.48496 * 109.47313 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47757 * 300.00226 * 18 16 15 22 22 N 1.35555 * 108.87394 * 0.43495 * 15 14 13 23 23 C 1.40261 * 107.83866 * 0.26425 * 8 7 6 24 24 N 1.30841 * 108.33860 * 359.55207 * 23 8 7 25 25 H 1.09008 * 109.47009 * 299.99700 * 1 2 3 26 26 H 1.08993 * 109.47336 * 59.99730 * 1 2 3 27 27 H 1.08995 * 109.47067 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47171 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47089 * 300.00320 * 3 2 1 30 30 H 1.08993 * 109.47357 * 60.00172 * 3 2 1 31 31 H 1.09001 * 109.46952 * 299.99257 * 4 2 1 32 32 H 1.09003 * 109.47354 * 59.99620 * 4 2 1 33 33 H 1.09005 * 109.47121 * 179.97438 * 4 2 1 34 34 H 1.09008 * 109.47047 * 300.00091 * 5 2 1 35 35 H 1.09005 * 109.47355 * 179.97438 * 5 2 1 36 36 H 1.08001 * 126.22238 * 0.03882 * 7 6 5 37 37 H 0.97003 * 119.99849 * 359.97438 * 9 8 7 38 38 H 1.07995 * 126.45226 * 359.97438 * 13 12 10 39 39 H 1.08003 * 126.06198 * 180.02562 * 14 13 12 40 40 H 1.09003 * 109.46982 * 240.15596 * 16 15 14 41 41 H 0.96700 * 113.99579 * 299.99575 * 17 16 15 42 42 H 0.97001 * 125.68311 * 179.83248 * 22 15 14 43 43 H 1.08000 * 125.83656 * 179.74065 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4839 -0.8781 -1.5212 5 6 2.4841 -0.8782 1.5210 6 7 1.9958 -2.2595 1.5211 7 6 2.6259 -3.3302 0.9719 8 6 1.8449 -4.4197 1.1868 9 7 2.1287 -5.7363 0.7793 10 6 1.2620 -6.7299 1.0586 11 8 0.2339 -6.4884 1.6638 12 6 1.5581 -8.1023 0.6343 13 6 0.7669 -9.2106 0.8500 14 6 1.4276 -10.3041 0.2811 15 6 2.5821 -9.8536 -0.2653 16 6 3.5980 -10.6995 -0.9889 17 8 3.7492 -10.2217 -2.3271 18 14 3.0202 -12.4703 -1.0232 19 1 1.7158 -12.5517 -1.7283 20 1 4.0208 -13.3037 -1.7368 21 1 2.8630 -12.9669 0.3675 22 7 2.6763 -8.5182 -0.0523 23 6 0.7021 -3.9986 1.8825 24 7 0.7961 -2.7097 2.0868 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.5740 1.7565 -0.0005 29 1 2.1206 2.2703 -0.8900 30 1 2.1207 2.2703 0.8899 31 1 2.1207 -1.9058 -1.5212 32 1 2.1205 -0.3643 -2.4112 33 1 3.5740 -0.8777 -1.5215 34 1 2.1208 -0.3644 2.4111 35 1 3.5741 -0.8786 1.5207 36 1 3.5757 -3.3173 0.4580 37 1 2.9478 -5.9286 0.2967 38 1 -0.1838 -9.2306 1.3619 39 1 1.0769 -11.3255 0.2742 40 1 4.5554 -10.6397 -0.4714 41 1 2.9347 -10.2461 -2.8478 42 1 3.4078 -7.9496 -0.3396 43 1 -0.1145 -4.6308 2.1985 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_6580494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:52:15 Heat of formation + Delta-G solvation = 19.822937 kcal Electronic energy + Delta-G solvation = -24331.676032 eV Core-core repulsion = 20731.170212 eV Total energy + Delta-G solvation = -3600.505820 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.137 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.67467 -42.16512 -40.15652 -37.65393 -36.05597 -33.76086 -32.28132 -31.54441 -30.33847 -29.53063 -28.38629 -28.35371 -27.46915 -26.36454 -23.88298 -22.48760 -22.01149 -21.34724 -21.04015 -19.62962 -18.46771 -18.02468 -16.88842 -16.78048 -16.50680 -16.29433 -15.90078 -15.50631 -15.33168 -15.00034 -14.71529 -14.52702 -14.20839 -14.16587 -14.08174 -13.98562 -13.87269 -13.84059 -13.69930 -13.43583 -13.21851 -13.15610 -13.03438 -12.28228 -12.25041 -12.07618 -11.81664 -11.79930 -11.41636 -11.28692 -10.85873 -10.81711 -10.62726 -10.08934 -10.06469 -9.37560 -8.64361 0.19212 0.80457 1.12367 1.31964 1.44866 1.59273 1.63602 1.65399 1.76324 1.86138 1.90107 1.97611 2.12556 2.24502 2.38761 2.56595 3.49752 3.61250 3.69408 3.77644 3.95652 4.22734 4.23939 4.30563 4.52631 4.60170 4.66922 4.68702 4.71407 4.74038 4.81723 4.82529 4.86302 4.87540 4.92063 5.02709 5.07322 5.50598 5.56571 5.59170 5.64636 5.71157 5.76647 6.03636 6.27175 6.44153 6.63044 6.65807 7.02209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.476 4.476 2 Si 1.095 2.905 3 C -0.455 4.455 4 C -0.459 4.459 5 C -0.190 4.190 6 N -0.339 5.339 7 C 0.035 3.965 8 C -0.026 4.026 9 N -0.627 5.627 10 C 0.587 3.413 11 O -0.556 6.556 12 C -0.058 4.058 13 C -0.113 4.113 14 C -0.219 4.219 15 C 0.036 3.964 16 C -0.059 4.059 17 O -0.551 6.551 18 Si 1.007 2.993 19 H -0.254 1.254 20 H -0.271 1.271 21 H -0.259 1.259 22 N -0.508 5.508 23 C 0.023 3.977 24 N -0.316 5.316 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.045 0.955 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.133 0.867 36 H 0.221 0.779 37 H 0.421 0.579 38 H 0.145 0.855 39 H 0.157 0.843 40 H 0.137 0.863 41 H 0.393 0.607 42 H 0.431 0.569 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.090 0.776 -4.675 9.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.580 4.580 2 Si 1.285 2.715 3 C -0.563 4.563 4 C -0.566 4.566 5 C -0.354 4.354 6 N -0.121 5.121 7 C -0.115 4.115 8 C -0.130 4.130 9 N -0.272 5.272 10 C 0.377 3.623 11 O -0.434 6.434 12 C -0.172 4.172 13 C -0.140 4.140 14 C -0.243 4.243 15 C -0.084 4.084 16 C -0.170 4.170 17 O -0.357 6.357 18 Si 0.830 3.170 19 H -0.178 1.178 20 H -0.196 1.196 21 H -0.183 1.183 22 N -0.106 5.106 23 C -0.162 4.162 24 N -0.140 5.140 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.122 0.878 35 H 0.151 0.849 36 H 0.238 0.762 37 H 0.259 0.741 38 H 0.163 0.837 39 H 0.175 0.825 40 H 0.154 0.846 41 H 0.243 0.757 42 H 0.272 0.728 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 7.297 1.444 -3.548 8.241 hybrid contribution 0.011 -0.270 -0.404 0.487 sum 7.308 1.174 -3.952 8.391 Atomic orbital electron populations 1.26515 1.24418 1.03038 1.03997 0.78247 0.63993 0.65864 0.63437 1.26138 1.07323 1.17846 1.05035 1.26226 1.07445 1.07629 1.15338 1.27425 1.06687 0.81679 1.19594 1.48303 1.14629 1.07700 1.41446 1.22533 1.00773 0.85123 1.03045 1.17746 0.98603 0.85623 1.11030 1.42400 1.23841 1.04119 1.56839 1.17207 0.82936 0.83279 0.78900 1.90748 1.27322 1.82902 1.42406 1.20022 0.93206 0.93322 1.10661 1.21457 1.00092 0.90848 1.01599 1.20917 0.96332 1.00139 1.06912 1.21361 0.98950 0.84157 1.03885 1.24890 1.01536 1.06810 0.83734 1.86491 1.39505 1.87766 1.21987 0.84811 0.79260 0.72228 0.80715 1.17800 1.19637 1.18255 1.41851 1.17905 1.08284 1.42538 1.24318 0.99693 0.92074 1.00083 1.77402 1.03199 1.12330 1.21114 0.91868 0.91246 0.93543 0.89606 0.90722 0.90922 0.92153 0.90972 0.89250 0.87823 0.84882 0.76214 0.74092 0.83680 0.82540 0.84551 0.75742 0.72836 0.79952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 -0.68 8.65 113.37 0.98 0.30 16 2 Si 1.10 -7.71 12.79 68.60 0.88 -6.83 16 3 C -0.45 3.42 8.65 113.37 0.98 4.41 16 4 C -0.46 2.95 8.65 113.37 0.98 3.93 16 5 C -0.19 0.99 5.59 127.77 0.71 1.71 16 6 N -0.34 -0.71 3.01 -182.89 -0.55 -1.26 16 7 C 0.03 -0.04 11.44 83.50 0.96 0.91 16 8 C -0.03 -0.12 6.90 37.63 0.26 0.14 16 9 N -0.63 -0.43 5.47 -307.61 -1.68 -2.11 16 10 C 0.59 3.95 7.76 86.44 0.67 4.62 16 11 O -0.56 -8.24 14.03 -4.42 -0.06 -8.30 16 12 C -0.06 -0.18 7.05 40.34 0.28 0.11 16 13 C -0.11 -0.51 10.65 22.57 0.24 -0.27 16 14 C -0.22 -0.07 9.32 22.01 0.21 0.13 16 15 C 0.04 -0.10 6.47 41.34 0.27 0.16 16 16 C -0.06 0.38 3.08 71.24 0.22 0.60 16 17 O -0.55 3.15 12.88 -148.98 -1.92 1.23 16 18 Si 1.01 -5.02 25.82 68.60 1.77 -3.25 16 19 H -0.25 0.98 7.11 99.48 0.71 1.69 16 20 H -0.27 0.48 7.11 99.48 0.71 1.19 16 21 H -0.26 0.76 7.11 99.48 0.71 1.47 16 22 N -0.51 1.84 5.99 -171.93 -1.03 0.81 16 23 C 0.02 0.27 10.83 85.33 0.92 1.19 16 24 N -0.32 -3.38 12.56 -56.76 -0.71 -4.09 16 25 H 0.06 0.16 7.96 -2.38 -0.02 0.14 16 26 H 0.07 0.04 7.96 -2.39 -0.02 0.02 16 27 H 0.05 0.30 7.96 -2.39 -0.02 0.28 16 28 H 0.08 -0.83 7.96 -2.39 -0.02 -0.85 16 29 H 0.07 -0.49 7.96 -2.39 -0.02 -0.51 16 30 H 0.07 -0.50 7.96 -2.39 -0.02 -0.51 16 31 H 0.06 -0.23 7.96 -2.39 -0.02 -0.25 16 32 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 33 H 0.09 -0.88 7.96 -2.38 -0.02 -0.90 16 34 H 0.10 -0.43 7.96 -2.38 -0.02 -0.45 16 35 H 0.13 -1.57 7.96 -2.38 -0.02 -1.59 16 36 H 0.22 -2.51 8.06 -2.91 -0.02 -2.53 16 37 H 0.42 -3.29 7.95 -92.71 -0.74 -4.03 16 38 H 0.15 0.77 8.06 -2.91 -0.02 0.74 16 39 H 0.16 -0.40 6.17 -2.91 -0.02 -0.42 16 40 H 0.14 -1.27 7.96 -2.39 -0.02 -1.29 16 41 H 0.39 -4.30 8.70 -74.06 -0.64 -4.94 16 42 H 0.43 -4.19 8.19 -92.71 -0.76 -4.95 16 43 H 0.18 2.77 5.91 -2.91 -0.02 2.75 16 Total: 0.00 -25.23 367.54 4.05 -21.18 By element: Atomic # 1 Polarization: -15.01 SS G_CDS: -0.33 Total: -15.34 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: 7.68 Total: 17.96 kcal Atomic # 7 Polarization: -2.67 SS G_CDS: -3.98 Total: -6.65 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -1.98 Total: -7.07 kcal Atomic # 14 Polarization: -12.73 SS G_CDS: 2.65 Total: -10.08 kcal Total: -25.23 4.05 -21.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_6580494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.004 kcal (2) G-P(sol) polarization free energy of solvation -25.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds