Wall clock time and date at job start Sun Mar 7 2021 10:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35961 * 117.00013 * 2 1 4 4 C 1.39448 * 120.11713 * 179.97438 * 3 2 1 5 5 O 1.34782 * 133.24971 * 359.97438 * 4 3 2 6 6 C 1.34919 * 110.84552 * 180.02562 * 5 4 3 7 7 C 1.46973 * 125.13917 * 179.97438 * 6 5 4 8 8 O 1.21680 * 119.99780 * 180.02562 * 7 6 5 9 9 N 1.34775 * 119.99762 * 0.02562 * 7 6 5 10 10 C 1.40694 * 119.99744 * 180.02562 * 9 7 6 11 11 C 1.35774 * 126.08359 * 179.71540 * 10 9 7 12 12 N 1.35831 * 107.55961 * 179.83467 * 11 10 9 13 13 C 1.46497 * 126.05402 * 180.17907 * 12 11 10 14 14 Si 1.86301 * 109.47145 * 270.31427 * 13 12 11 15 15 C 1.86300 * 109.47378 * 59.99750 * 14 13 12 16 16 C 1.86296 * 109.47473 * 180.02562 * 14 13 12 17 17 C 1.86303 * 109.47057 * 300.00107 * 14 13 12 18 18 N 1.40064 * 107.89173 * 0.42418 * 12 11 10 19 19 C 1.30832 * 108.37826 * 359.73649 * 18 12 11 20 20 C 1.35823 * 109.72148 * 359.97438 * 6 5 4 21 21 C 1.40611 * 119.13156 * 180.02562 * 4 3 2 22 22 C 1.39773 * 120.12669 * 359.97438 * 21 4 3 23 23 C 1.50695 * 120.10000 * 180.02562 * 22 21 4 24 24 O 1.42904 * 109.47037 * 74.97478 * 23 22 21 25 25 Si 1.86301 * 109.47473 * 194.97551 * 23 22 21 26 26 H 1.48503 * 109.47058 * 60.00114 * 25 23 22 27 27 H 1.48496 * 109.47026 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47110 * 300.00066 * 25 23 22 29 29 C 1.36641 * 119.80991 * 359.97438 * 22 21 4 30 30 C 1.38268 * 120.12505 * 0.27329 * 3 2 1 31 31 H 1.09002 * 109.46938 * 59.99905 * 1 2 3 32 32 H 1.08993 * 109.47090 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47441 * 300.00465 * 1 2 3 34 34 H 0.96991 * 120.00567 * 359.97438 * 9 7 6 35 35 H 1.08005 * 126.21791 * 359.96375 * 11 10 9 36 36 H 1.09002 * 109.47263 * 30.31215 * 13 12 11 37 37 H 1.08997 * 109.47059 * 150.31780 * 13 12 11 38 38 H 1.09002 * 109.46893 * 60.00296 * 15 14 13 39 39 H 1.08996 * 109.47604 * 179.97438 * 15 14 13 40 40 H 1.08998 * 109.47169 * 300.00605 * 15 14 13 41 41 H 1.09006 * 109.47288 * 59.99808 * 16 14 13 42 42 H 1.08996 * 109.47362 * 179.97438 * 16 14 13 43 43 H 1.09007 * 109.47002 * 300.00361 * 16 14 13 44 44 H 1.08998 * 109.46928 * 59.99739 * 17 14 13 45 45 H 1.08996 * 109.47352 * 180.02562 * 17 14 13 46 46 H 1.09001 * 109.47032 * 300.00112 * 17 14 13 47 47 H 1.08000 * 125.83103 * 180.02562 * 19 18 12 48 48 H 1.07994 * 126.96065 * 179.97438 * 20 6 5 49 49 H 1.09002 * 109.47131 * 314.97949 * 23 22 21 50 50 H 0.96698 * 113.99915 * 60.00427 * 24 23 22 51 51 H 1.08002 * 119.75149 * 179.97438 * 29 22 21 52 52 H 1.08001 * 119.65734 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4387 1.2872 0.0005 5 8 4.4142 0.3572 0.0016 6 6 5.6317 0.9385 0.0023 7 6 6.9129 0.2183 0.0040 8 8 7.9596 0.8389 0.0050 9 7 6.9284 -1.1293 0.0044 10 6 8.1549 -1.8187 0.0066 11 6 8.3143 -3.1670 0.0128 12 7 9.6485 -3.4219 0.0091 13 6 10.2731 -4.7471 0.0097 14 14 10.5347 -5.3095 1.7664 15 6 8.8924 -5.3967 2.6417 16 6 11.3297 -6.9943 1.7673 17 6 11.6442 -4.0995 2.6472 18 7 10.3213 -2.1935 0.0103 19 6 9.4305 -1.2353 0.0089 20 6 5.4945 2.2898 0.0011 21 6 4.0554 2.5509 0.0011 22 6 3.2767 3.7116 0.0005 23 6 3.9382 5.0655 0.0005 24 8 4.4617 5.3399 -1.3006 25 14 2.6862 6.3686 0.4536 26 1 2.1423 6.0835 1.8057 27 1 3.3384 7.7027 0.4542 28 1 1.5802 6.3581 -0.5372 29 6 1.9137 3.6151 -0.0011 30 6 1.2958 2.3727 0.0057 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 6.0941 -1.6240 0.0040 35 1 7.5240 -3.9031 0.0174 36 1 9.6240 -5.4550 -0.5056 37 1 11.2340 -4.6960 -0.5023 38 1 8.2432 -6.1046 2.1264 39 1 9.0454 -5.7262 3.6694 40 1 8.4277 -4.4107 2.6412 41 1 12.2907 -6.9429 1.2554 42 1 11.4832 -7.3232 2.7951 43 1 10.6809 -7.7025 1.2518 44 1 11.1795 -3.1136 2.6467 45 1 11.7977 -4.4288 3.6748 46 1 12.6051 -4.0485 2.1351 47 1 9.6413 -0.1760 0.0089 48 1 6.2874 3.0230 0.0017 49 1 4.7501 5.0732 0.7278 50 1 3.7935 5.3489 -1.9995 51 1 1.3128 4.5126 -0.0011 52 1 0.2175 2.3120 0.0097 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_6672420.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:52:24 Heat of formation + Delta-G solvation = -17.280052 kcal Electronic energy + Delta-G solvation = -35079.731213 eV Core-core repulsion = 30365.461973 eV Total energy + Delta-G solvation = -4714.269240 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 403.157 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -43.78504 -42.39750 -40.87461 -40.30758 -39.08128 -37.00109 -36.15936 -33.79961 -33.62863 -32.00173 -31.28752 -30.33639 -29.52749 -28.57765 -28.37581 -28.33251 -27.14539 -26.26780 -25.15024 -24.04422 -22.92613 -22.16085 -21.80674 -21.38588 -19.65114 -18.96708 -18.72798 -18.35561 -17.85317 -17.74625 -17.06465 -16.86563 -16.73652 -16.42658 -16.21377 -15.90344 -15.82405 -15.70243 -15.25485 -15.00688 -14.70716 -14.53247 -14.24170 -14.20568 -14.15898 -14.04404 -13.89985 -13.83396 -13.58121 -13.45160 -13.42774 -13.29666 -13.20891 -13.15253 -13.02654 -12.46842 -12.32624 -12.28752 -12.08804 -12.06234 -11.82267 -11.60559 -11.56285 -11.44469 -11.01870 -10.85081 -10.81117 -10.40533 -10.08082 -9.89320 -9.04027 -8.70723 -0.71572 0.07393 0.48890 0.81927 1.09620 1.18052 1.32380 1.46969 1.53103 1.57885 1.65511 1.86084 1.90459 1.95708 2.10593 2.13401 2.16691 2.38210 2.57021 3.15535 3.42362 3.60726 3.67911 3.68901 3.80931 3.85704 3.90042 3.99345 4.15657 4.23113 4.30952 4.40913 4.43276 4.49896 4.54276 4.65597 4.68544 4.72416 4.74827 4.75777 4.82236 4.82685 4.82879 4.85322 4.87139 4.88377 4.90144 5.03045 5.19754 5.32980 5.51520 5.55848 5.59831 5.64991 5.68202 5.99789 6.16670 6.26642 6.60360 6.73121 6.82799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.332 6.332 3 C 0.137 3.863 4 C 0.024 3.976 5 O -0.180 6.180 6 C -0.029 4.029 7 C 0.600 3.400 8 O -0.530 6.530 9 N -0.614 5.614 10 C -0.031 4.031 11 C 0.041 3.959 12 N -0.337 5.337 13 C -0.191 4.191 14 Si 1.096 2.904 15 C -0.461 4.461 16 C -0.454 4.454 17 C -0.475 4.475 18 N -0.313 5.313 19 C 0.027 3.973 20 C -0.104 4.104 21 C -0.095 4.095 22 C -0.102 4.102 23 C -0.087 4.087 24 O -0.551 6.551 25 Si 0.989 3.011 26 H -0.253 1.253 27 H -0.277 1.277 28 H -0.233 1.233 29 C -0.099 4.099 30 C -0.166 4.166 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.429 0.571 35 H 0.221 0.779 36 H 0.133 0.867 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.046 0.954 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.188 0.812 48 H 0.177 0.823 49 H 0.115 0.885 50 H 0.389 0.611 51 H 0.160 0.840 52 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.320 -5.044 0.293 10.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.246 6.246 3 C 0.091 3.909 4 C -0.024 4.024 5 O -0.082 6.082 6 C -0.080 4.080 7 C 0.387 3.613 8 O -0.409 6.409 9 N -0.258 5.258 10 C -0.136 4.136 11 C -0.109 4.109 12 N -0.119 5.119 13 C -0.354 4.354 14 Si 1.285 2.715 15 C -0.569 4.569 16 C -0.563 4.563 17 C -0.579 4.579 18 N -0.137 5.137 19 C -0.158 4.158 20 C -0.125 4.125 21 C -0.096 4.096 22 C -0.103 4.103 23 C -0.196 4.196 24 O -0.359 6.359 25 Si 0.811 3.189 26 H -0.177 1.177 27 H -0.202 1.202 28 H -0.156 1.156 29 C -0.116 4.116 30 C -0.184 4.184 31 H 0.092 0.908 32 H 0.135 0.865 33 H 0.092 0.908 34 H 0.267 0.733 35 H 0.237 0.763 36 H 0.151 0.849 37 H 0.124 0.876 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.065 0.935 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.205 0.795 48 H 0.194 0.806 49 H 0.133 0.867 50 H 0.238 0.762 51 H 0.177 0.823 52 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -7.305 -4.838 0.783 8.797 hybrid contribution -1.106 0.091 -0.412 1.184 sum -8.411 -4.747 0.372 9.666 Atomic orbital electron populations 1.23481 0.75377 1.06053 1.03070 1.86144 1.24243 1.25727 1.88449 1.17949 0.86137 0.86788 1.00021 1.19186 0.88168 0.87142 1.07914 1.84004 1.12627 1.35006 1.76599 1.21641 0.83533 0.92610 1.10167 1.16586 0.85459 0.81849 0.77392 1.90794 1.30968 1.67901 1.51212 1.42425 1.07859 1.05012 1.70519 1.17753 0.86035 0.91318 1.18458 1.22541 0.88217 0.95334 1.04793 1.48323 1.03624 1.05710 1.54253 1.27439 1.03507 0.80731 1.23750 0.78245 0.66144 0.65205 0.61927 1.26257 1.17457 1.04463 1.08681 1.26127 1.07917 1.16955 1.05266 1.26502 1.11103 1.11678 1.08645 1.77401 1.21701 0.89423 1.25141 1.24334 0.89643 1.00184 1.01600 1.22884 0.95389 0.94267 0.99944 1.19549 0.92377 0.92680 1.04962 1.19647 0.93358 0.94397 1.02924 1.25193 1.07374 0.97675 0.89338 1.86526 1.39250 1.93374 1.16711 0.85158 0.76637 0.76001 0.81119 1.17669 1.20228 1.15564 1.20870 0.93149 0.98824 0.98774 1.21350 1.01773 0.89670 1.05656 0.90756 0.86517 0.90754 0.73296 0.76275 0.84888 0.87583 0.89355 0.90957 0.92230 0.90826 0.90701 0.89627 0.93482 0.91236 0.91748 0.79536 0.80551 0.86716 0.76166 0.82300 0.80441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.10 9.81 113.37 1.11 1.01 16 2 O -0.33 -0.72 10.50 -93.11 -0.98 -1.70 16 3 C 0.14 0.41 6.70 22.57 0.15 0.57 16 4 C 0.02 0.17 7.35 23.14 0.17 0.34 16 5 O -0.18 -1.41 10.28 -13.38 -0.14 -1.55 16 6 C -0.03 -0.24 7.07 24.00 0.17 -0.07 16 7 C 0.60 5.60 7.77 86.53 0.67 6.27 16 8 O -0.53 -7.79 13.98 -4.29 -0.06 -7.85 16 9 N -0.61 -2.76 5.47 -307.37 -1.68 -4.44 16 10 C -0.03 -0.20 6.90 37.64 0.26 0.06 16 11 C 0.04 0.02 11.43 83.50 0.95 0.97 16 12 N -0.34 -0.96 3.02 -182.90 -0.55 -1.52 16 13 C -0.19 0.89 5.59 127.77 0.71 1.60 16 14 Si 1.10 -7.07 12.78 68.60 0.88 -6.19 16 15 C -0.46 2.44 8.65 113.37 0.98 3.42 16 16 C -0.45 3.24 8.65 113.37 0.98 4.22 16 17 C -0.48 -0.80 8.65 113.37 0.98 0.18 16 18 N -0.31 -3.40 12.56 -56.76 -0.71 -4.11 16 19 C 0.03 0.32 10.84 85.34 0.92 1.25 16 20 C -0.10 -0.80 10.68 23.80 0.25 -0.55 16 21 C -0.09 -0.58 6.16 -20.24 -0.12 -0.70 16 22 C -0.10 -0.15 5.26 -19.87 -0.10 -0.26 16 23 C -0.09 0.03 2.70 71.23 0.19 0.22 16 24 O -0.55 -0.76 12.88 -148.98 -1.92 -2.68 16 25 Si 0.99 -3.13 25.50 68.60 1.75 -1.38 16 26 H -0.25 0.58 7.11 99.48 0.71 1.28 16 27 H -0.28 -0.34 7.11 99.48 0.71 0.36 16 28 H -0.23 1.41 6.74 99.48 0.67 2.08 16 29 C -0.10 0.24 8.62 22.02 0.19 0.43 16 30 C -0.17 0.43 9.03 22.40 0.20 0.63 16 31 H 0.07 -0.73 7.67 -2.39 -0.02 -0.75 16 32 H 0.12 -1.12 8.14 -2.39 -0.02 -1.14 16 33 H 0.07 -0.73 7.65 -2.39 -0.02 -0.75 16 34 H 0.43 -0.48 8.54 -92.71 -0.79 -1.28 16 35 H 0.22 -2.00 8.06 -2.91 -0.02 -2.02 16 36 H 0.13 -1.46 7.96 -2.39 -0.02 -1.48 16 37 H 0.11 -0.42 7.96 -2.39 -0.02 -0.44 16 38 H 0.09 -0.75 7.96 -2.39 -0.02 -0.77 16 39 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 40 H 0.06 -0.14 7.96 -2.39 -0.02 -0.16 16 41 H 0.07 -0.49 7.96 -2.38 -0.02 -0.51 16 42 H 0.07 -0.46 7.96 -2.39 -0.02 -0.48 16 43 H 0.08 -0.79 7.96 -2.38 -0.02 -0.81 16 44 H 0.05 0.32 7.96 -2.39 -0.02 0.30 16 45 H 0.07 0.06 7.96 -2.39 -0.02 0.04 16 46 H 0.06 0.16 7.96 -2.39 -0.02 0.14 16 47 H 0.19 2.70 5.91 -2.91 -0.02 2.68 16 48 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16 49 H 0.11 -0.03 7.96 -2.39 -0.02 -0.05 16 50 H 0.39 -2.28 8.70 -74.06 -0.64 -2.93 16 51 H 0.16 -1.20 4.84 -2.91 -0.01 -1.21 16 52 H 0.18 -1.69 6.26 -2.91 -0.02 -1.71 16 Total: 0.00 -26.15 439.17 5.54 -20.61 By element: Atomic # 1 Polarization: -9.06 SS G_CDS: 0.27 Total: -8.80 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: 8.68 Total: 19.60 kcal Atomic # 7 Polarization: -7.12 SS G_CDS: -2.95 Total: -10.07 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -3.09 Total: -13.77 kcal Atomic # 14 Polarization: -10.20 SS G_CDS: 2.63 Total: -7.57 kcal Total: -26.15 5.54 -20.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_6672420.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.333 kcal (2) G-P(sol) polarization free energy of solvation -26.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds