Wall clock time and date at job start Sun Mar 7 2021 10:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33799 * 122.45256 * 2 1 4 4 C 1.50706 * 124.52294 * 359.97271 * 3 2 1 5 5 O 1.42896 * 109.47005 * 113.32810 * 4 3 2 6 6 Si 1.86291 * 109.47338 * 233.33041 * 4 3 2 7 7 H 1.48503 * 109.47473 * 59.99770 * 6 4 3 8 8 H 1.48500 * 109.47310 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47327 * 300.00021 * 6 4 3 10 10 S 1.70624 * 110.95849 * 179.97438 * 3 2 1 11 11 C 1.75829 * 91.56485 * 359.97438 * 10 3 2 12 12 C 1.46573 * 125.45723 * 179.73429 * 11 10 3 13 13 O 1.21733 * 119.99582 * 180.02562 * 12 11 10 14 14 N 1.34772 * 120.00283 * 0.02830 * 12 11 10 15 15 C 1.40717 * 120.00103 * 179.97438 * 14 12 11 16 16 C 1.35766 * 126.08218 * 179.97438 * 15 14 12 17 17 N 1.35832 * 107.56080 * 180.02562 * 16 15 14 18 18 C 1.46505 * 126.05661 * 180.02562 * 17 16 15 19 19 Si 1.86299 * 109.47148 * 89.99667 * 18 17 16 20 20 C 1.86295 * 109.47301 * 60.00014 * 19 18 17 21 21 C 1.86300 * 109.47145 * 180.02562 * 19 18 17 22 22 C 1.86303 * 109.47046 * 300.00081 * 19 18 17 23 23 N 1.40069 * 107.89232 * 0.02562 * 17 16 15 24 24 C 1.30831 * 108.36920 * 359.71564 * 23 17 16 25 25 C 1.36651 * 109.07926 * 0.02562 * 11 10 3 26 26 H 1.08999 * 109.47054 * 84.90146 * 1 2 3 27 27 H 1.08999 * 109.47005 * 204.90361 * 1 2 3 28 28 H 1.09001 * 109.47092 * 324.89735 * 1 2 3 29 29 H 1.09001 * 109.46788 * 353.33344 * 4 3 2 30 30 H 0.96700 * 114.00302 * 60.00185 * 5 4 3 31 31 H 0.97004 * 119.99689 * 359.97438 * 14 12 11 32 32 H 1.08008 * 126.22045 * 359.97438 * 16 15 14 33 33 H 1.08999 * 109.47202 * 210.00227 * 18 17 16 34 34 H 1.09005 * 109.46858 * 329.99509 * 18 17 16 35 35 H 1.09007 * 109.46788 * 59.99668 * 20 19 18 36 36 H 1.08998 * 109.47292 * 179.97438 * 20 19 18 37 37 H 1.09003 * 109.47095 * 300.00266 * 20 19 18 38 38 H 1.09005 * 109.47189 * 59.99642 * 21 19 18 39 39 H 1.08998 * 109.47471 * 180.02562 * 21 19 18 40 40 H 1.09007 * 109.46689 * 300.00176 * 21 19 18 41 41 H 1.09003 * 109.47011 * 59.99942 * 22 19 18 42 42 H 1.08998 * 109.46730 * 180.02562 * 22 19 18 43 43 H 1.08998 * 109.47384 * 299.99927 * 22 19 18 44 44 H 1.08006 * 125.83280 * 180.27734 * 24 23 17 45 45 H 1.08000 * 123.34860 * 179.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2249 1.1290 0.0000 4 6 1.6355 2.5160 -0.0006 5 8 1.9397 3.1634 1.2365 6 14 2.3585 3.4975 -1.4093 7 1 2.0424 2.8248 -2.6949 8 1 1.7772 4.8640 -1.4103 9 1 3.8319 3.5859 -1.2462 10 16 3.8970 0.7890 0.0007 11 6 3.5938 -0.9429 0.0018 12 6 4.6232 -1.9863 -0.0027 13 8 4.3001 -3.1600 -0.0020 14 7 5.9273 -1.6463 -0.0077 15 6 6.9156 -2.6481 -0.0115 16 6 8.2582 -2.4467 -0.0171 17 7 8.8556 -3.6666 -0.0198 18 6 10.2985 -3.9202 -0.0254 19 14 10.9168 -4.0282 1.7287 20 6 10.0453 -5.4191 2.6098 21 6 12.7518 -4.3498 1.7216 22 6 10.5718 -2.4228 2.6087 23 7 7.8477 -4.6393 -0.0163 24 6 6.6888 -4.0322 -0.0056 25 6 2.2447 -1.1602 0.0010 26 1 -0.3633 0.0913 -1.0236 27 1 -0.3633 -0.9321 0.4327 28 1 -0.3633 0.8408 0.5910 29 1 0.5540 2.4511 -0.1203 30 1 2.8866 3.2559 1.4096 31 1 6.1847 -0.7111 -0.0086 32 1 8.7601 -1.4903 -0.0198 33 1 10.5004 -4.8594 -0.5404 34 1 10.8084 -3.1063 -0.5410 35 1 10.2472 -6.3584 2.0948 36 1 10.4074 -5.4826 3.6360 37 1 8.9717 -5.2305 2.6140 38 1 13.2614 -3.5357 1.2061 39 1 13.1135 -4.4135 2.7478 40 1 12.9540 -5.2890 1.2065 41 1 9.4982 -2.2342 2.6128 42 1 10.9339 -2.4859 3.6348 43 1 11.0816 -1.6089 2.0932 44 1 5.7224 -4.5145 0.0038 45 1 1.8020 -2.1453 0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608520_6739946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:52:40 Heat of formation + Delta-G solvation = 1.446399 kcal Electronic energy + Delta-G solvation = -25974.576024 eV Core-core repulsion = 22244.087735 eV Total energy + Delta-G solvation = -3730.488288 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 353.114 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.26740 -40.65547 -39.65432 -37.66067 -35.85694 -33.71900 -32.53752 -30.43963 -29.92215 -29.69235 -28.58577 -28.44678 -27.54872 -26.24096 -24.48862 -22.77601 -22.08381 -21.19232 -20.26755 -19.22336 -18.50380 -17.83049 -17.34130 -16.83417 -16.58798 -16.17800 -15.95576 -15.82345 -15.45545 -15.04836 -14.95027 -14.65243 -14.38391 -14.35113 -14.31360 -14.09511 -13.94282 -13.80533 -13.55878 -13.52616 -13.41601 -13.25463 -13.21055 -13.16638 -13.12261 -12.53470 -12.45172 -12.25528 -12.16931 -11.82602 -11.65188 -11.36414 -11.04313 -11.02899 -10.93183 -10.82691 -10.01581 -9.78624 -9.53266 -8.58243 -0.71314 0.22390 0.62930 0.75794 0.92079 1.18756 1.24532 1.28815 1.40733 1.50281 1.67439 1.77321 1.82342 1.82975 2.14875 2.37870 2.41386 3.21503 3.47454 3.58995 3.70256 3.88096 4.03406 4.14767 4.27362 4.39206 4.42396 4.48154 4.56105 4.58033 4.59290 4.61413 4.63030 4.65311 4.73317 4.77137 4.80419 4.82576 4.93744 5.12368 5.22118 5.32649 5.33084 5.39901 5.57694 5.91679 6.02010 6.27624 6.30636 6.80687 7.07421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.093 4.093 3 C -0.230 4.230 4 C -0.048 4.048 5 O -0.530 6.530 6 Si 0.921 3.079 7 H -0.241 1.241 8 H -0.236 1.236 9 H -0.237 1.237 10 S 0.184 5.816 11 C -0.255 4.255 12 C 0.594 3.406 13 O -0.513 6.513 14 N -0.638 5.638 15 C -0.005 4.005 16 C 0.017 3.983 17 N -0.343 5.343 18 C -0.169 4.169 19 Si 1.019 2.981 20 C -0.446 4.446 21 C -0.449 4.449 22 C -0.450 4.450 23 N -0.280 5.280 24 C 0.049 3.951 25 C -0.040 4.040 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.131 0.869 30 H 0.375 0.625 31 H 0.407 0.593 32 H 0.177 0.823 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.205 0.795 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.966 5.058 -0.268 5.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.106 4.106 3 C -0.349 4.349 4 C -0.160 4.160 5 O -0.335 6.335 6 Si 0.740 3.260 7 H -0.164 1.164 8 H -0.158 1.158 9 H -0.160 1.160 10 S 0.453 5.547 11 C -0.376 4.376 12 C 0.382 3.618 13 O -0.390 6.390 14 N -0.283 5.283 15 C -0.109 4.109 16 C -0.132 4.132 17 N -0.126 5.126 18 C -0.335 4.335 19 Si 1.213 2.787 20 C -0.554 4.554 21 C -0.558 4.558 22 C -0.558 4.558 23 N -0.103 5.103 24 C -0.137 4.137 25 C -0.074 4.074 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.149 0.851 30 H 0.222 0.778 31 H 0.242 0.758 32 H 0.194 0.806 33 H 0.124 0.876 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.222 0.778 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 4.480 4.503 -0.985 6.428 hybrid contribution -1.181 0.179 0.173 1.207 sum 3.298 4.682 -0.813 5.784 Atomic orbital electron populations 1.20640 0.88828 1.03733 1.02901 1.18696 0.98279 0.90693 1.02889 1.24442 0.98335 1.01039 1.11104 1.24596 1.05625 0.89583 0.96201 1.86589 1.29462 1.79453 1.38024 0.86083 0.81254 0.81099 0.77575 1.16350 1.15810 1.16032 1.82836 1.03655 0.98851 1.69398 1.24294 0.97815 0.96293 1.19160 1.16825 0.80875 0.87550 0.76586 1.90750 1.81094 1.17934 1.49200 1.42546 1.04133 1.08447 1.73152 1.17594 0.87410 0.89459 1.16417 1.21869 0.91802 0.91423 1.08090 1.47993 1.05651 1.03063 1.55861 1.26971 0.77829 1.06685 1.21997 0.79384 0.66834 0.68312 0.64160 1.26069 1.08394 1.13258 1.07727 1.26097 1.19314 1.05279 1.05104 1.26128 1.05238 1.15992 1.08426 1.77470 0.94969 1.14111 1.23748 1.24477 0.97941 0.90926 1.00403 1.20736 0.90727 1.00240 0.95660 0.90577 0.90761 0.90683 0.85149 0.77821 0.75843 0.80630 0.87638 0.88271 0.91020 0.91211 0.90973 0.90973 0.90562 0.90856 0.91106 0.90718 0.91116 0.77827 0.82318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.17 9.48 36.00 0.34 0.51 16 2 C -0.09 -0.01 5.78 -106.45 -0.62 -0.62 16 3 C -0.23 0.11 4.83 -35.86 -0.17 -0.07 16 4 C -0.05 0.07 2.77 36.01 0.10 0.17 16 5 O -0.53 0.38 12.88 -35.23 -0.45 -0.07 16 6 Si 0.92 -1.45 27.41 -169.99 -4.66 -6.11 16 7 H -0.24 0.13 7.11 56.52 0.40 0.53 16 8 H -0.24 0.12 7.11 56.52 0.40 0.53 16 9 H -0.24 0.46 7.11 56.52 0.40 0.86 16 10 S 0.18 -0.21 20.83 -107.50 -2.24 -2.45 16 11 C -0.26 -0.32 6.45 -36.80 -0.24 -0.55 16 12 C 0.59 1.72 7.75 -12.90 -0.10 1.62 16 13 O -0.51 -2.95 13.99 5.16 0.07 -2.88 16 14 N -0.64 -0.61 5.47 -11.24 -0.06 -0.67 16 15 C 0.00 -0.01 6.90 -83.90 -0.58 -0.59 16 16 C 0.02 0.00 11.44 -16.67 -0.19 -0.19 16 17 N -0.34 -0.44 3.01 -9.16 -0.03 -0.47 16 18 C -0.17 0.31 5.59 59.85 0.33 0.65 16 19 Si 1.02 -3.06 12.79 -169.99 -2.17 -5.24 16 20 C -0.45 0.06 8.65 101.05 0.87 0.93 16 21 C -0.45 1.29 8.65 101.05 0.87 2.16 16 22 C -0.45 1.03 8.65 101.05 0.87 1.90 16 23 N -0.28 -1.22 12.56 30.71 0.39 -0.83 16 24 C 0.05 0.22 10.84 -17.22 -0.19 0.03 16 25 C -0.04 -0.04 9.78 -40.43 -0.40 -0.44 16 26 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 27 H 0.07 -0.15 8.10 -51.93 -0.42 -0.57 16 28 H 0.07 -0.15 6.99 -51.93 -0.36 -0.51 16 29 H 0.13 -0.31 6.25 -51.93 -0.32 -0.64 16 30 H 0.37 -1.44 8.70 45.56 0.40 -1.04 16 31 H 0.41 -0.81 7.94 -40.82 -0.32 -1.13 16 32 H 0.18 -0.61 8.06 -52.48 -0.42 -1.03 16 33 H 0.11 -0.18 7.96 -51.93 -0.41 -0.60 16 34 H 0.10 -0.40 7.96 -51.93 -0.41 -0.82 16 35 H 0.07 0.01 7.96 -51.92 -0.41 -0.41 16 36 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 37 H 0.07 0.13 7.96 -51.93 -0.41 -0.28 16 38 H 0.07 -0.24 7.96 -51.93 -0.41 -0.66 16 39 H 0.08 -0.19 7.96 -51.93 -0.41 -0.61 16 40 H 0.07 -0.20 7.96 -51.92 -0.41 -0.61 16 41 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 42 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 43 H 0.07 -0.23 7.96 -51.93 -0.41 -0.64 16 44 H 0.21 1.06 5.91 -52.48 -0.31 0.75 16 45 H 0.16 0.11 8.06 -52.49 -0.42 -0.32 16 LS Contribution 393.58 15.07 5.93 5.93 Total: 0.00 -8.34 393.58 -8.26 -16.60 By element: Atomic # 1 Polarization: -3.37 SS G_CDS: -5.96 Total: -9.33 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 0.92 Total: 5.51 kcal Atomic # 7 Polarization: -2.27 SS G_CDS: 0.30 Total: -1.97 kcal Atomic # 8 Polarization: -2.57 SS G_CDS: -0.38 Total: -2.95 kcal Atomic # 14 Polarization: -4.51 SS G_CDS: -6.83 Total: -11.34 kcal Atomic # 16 Polarization: -0.21 SS G_CDS: -2.24 Total: -2.45 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -8.34 -8.26 -16.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_6739946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.048 kcal (2) G-P(sol) polarization free energy of solvation -8.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds