Wall clock time and date at job start Sun Mar 7 2021 10:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33799 * 122.45256 * 2 1 4 4 C 1.50706 * 124.52294 * 359.97271 * 3 2 1 5 5 O 1.42896 * 109.47005 * 113.32810 * 4 3 2 6 6 Si 1.86291 * 109.47338 * 233.33041 * 4 3 2 7 7 H 1.48503 * 109.47473 * 59.99770 * 6 4 3 8 8 H 1.48500 * 109.47310 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47327 * 300.00021 * 6 4 3 10 10 S 1.70624 * 110.95849 * 179.97438 * 3 2 1 11 11 C 1.75829 * 91.56485 * 359.97438 * 10 3 2 12 12 C 1.46573 * 125.45723 * 179.73429 * 11 10 3 13 13 O 1.21733 * 119.99582 * 180.02562 * 12 11 10 14 14 N 1.34772 * 120.00283 * 0.02830 * 12 11 10 15 15 C 1.40717 * 120.00103 * 179.97438 * 14 12 11 16 16 C 1.35766 * 126.08218 * 179.97438 * 15 14 12 17 17 N 1.35832 * 107.56080 * 180.02562 * 16 15 14 18 18 C 1.46505 * 126.05661 * 180.02562 * 17 16 15 19 19 Si 1.86299 * 109.47148 * 89.99667 * 18 17 16 20 20 C 1.86295 * 109.47301 * 60.00014 * 19 18 17 21 21 C 1.86300 * 109.47145 * 180.02562 * 19 18 17 22 22 C 1.86303 * 109.47046 * 300.00081 * 19 18 17 23 23 N 1.40069 * 107.89232 * 0.02562 * 17 16 15 24 24 C 1.30831 * 108.36920 * 359.71564 * 23 17 16 25 25 C 1.36651 * 109.07926 * 0.02562 * 11 10 3 26 26 H 1.08999 * 109.47054 * 84.90146 * 1 2 3 27 27 H 1.08999 * 109.47005 * 204.90361 * 1 2 3 28 28 H 1.09001 * 109.47092 * 324.89735 * 1 2 3 29 29 H 1.09001 * 109.46788 * 353.33344 * 4 3 2 30 30 H 0.96700 * 114.00302 * 60.00185 * 5 4 3 31 31 H 0.97004 * 119.99689 * 359.97438 * 14 12 11 32 32 H 1.08008 * 126.22045 * 359.97438 * 16 15 14 33 33 H 1.08999 * 109.47202 * 210.00227 * 18 17 16 34 34 H 1.09005 * 109.46858 * 329.99509 * 18 17 16 35 35 H 1.09007 * 109.46788 * 59.99668 * 20 19 18 36 36 H 1.08998 * 109.47292 * 179.97438 * 20 19 18 37 37 H 1.09003 * 109.47095 * 300.00266 * 20 19 18 38 38 H 1.09005 * 109.47189 * 59.99642 * 21 19 18 39 39 H 1.08998 * 109.47471 * 180.02562 * 21 19 18 40 40 H 1.09007 * 109.46689 * 300.00176 * 21 19 18 41 41 H 1.09003 * 109.47011 * 59.99942 * 22 19 18 42 42 H 1.08998 * 109.46730 * 180.02562 * 22 19 18 43 43 H 1.08998 * 109.47384 * 299.99927 * 22 19 18 44 44 H 1.08006 * 125.83280 * 180.27734 * 24 23 17 45 45 H 1.08000 * 123.34860 * 179.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2249 1.1290 0.0000 4 6 1.6355 2.5160 -0.0006 5 8 1.9397 3.1634 1.2365 6 14 2.3585 3.4975 -1.4093 7 1 2.0424 2.8248 -2.6949 8 1 1.7772 4.8640 -1.4103 9 1 3.8319 3.5859 -1.2462 10 16 3.8970 0.7890 0.0007 11 6 3.5938 -0.9429 0.0018 12 6 4.6232 -1.9863 -0.0027 13 8 4.3001 -3.1600 -0.0020 14 7 5.9273 -1.6463 -0.0077 15 6 6.9156 -2.6481 -0.0115 16 6 8.2582 -2.4467 -0.0171 17 7 8.8556 -3.6666 -0.0198 18 6 10.2985 -3.9202 -0.0254 19 14 10.9168 -4.0282 1.7287 20 6 10.0453 -5.4191 2.6098 21 6 12.7518 -4.3498 1.7216 22 6 10.5718 -2.4228 2.6087 23 7 7.8477 -4.6393 -0.0163 24 6 6.6888 -4.0322 -0.0056 25 6 2.2447 -1.1602 0.0010 26 1 -0.3633 0.0913 -1.0236 27 1 -0.3633 -0.9321 0.4327 28 1 -0.3633 0.8408 0.5910 29 1 0.5540 2.4511 -0.1203 30 1 2.8866 3.2559 1.4096 31 1 6.1847 -0.7111 -0.0086 32 1 8.7601 -1.4903 -0.0198 33 1 10.5004 -4.8594 -0.5404 34 1 10.8084 -3.1063 -0.5410 35 1 10.2472 -6.3584 2.0948 36 1 10.4074 -5.4826 3.6360 37 1 8.9717 -5.2305 2.6140 38 1 13.2614 -3.5357 1.2061 39 1 13.1135 -4.4135 2.7478 40 1 12.9540 -5.2890 1.2065 41 1 9.4982 -2.2342 2.6128 42 1 10.9339 -2.4859 3.6348 43 1 11.0816 -1.6089 2.0932 44 1 5.7224 -4.5145 0.0038 45 1 1.8020 -2.1453 0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_6739946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:52:39 Heat of formation + Delta-G solvation = 5.419231 kcal Electronic energy + Delta-G solvation = -25974.403749 eV Core-core repulsion = 22244.087735 eV Total energy + Delta-G solvation = -3730.316014 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 353.114 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.39551 -40.77594 -39.65660 -37.58317 -36.02449 -33.79217 -32.54193 -30.52086 -29.81945 -29.53016 -28.38069 -28.34679 -27.52754 -26.23807 -24.48939 -22.89237 -22.12848 -21.32783 -20.23648 -19.24310 -18.56624 -17.77769 -17.32727 -16.90116 -16.69550 -16.16481 -15.99417 -15.77952 -15.51797 -15.14959 -14.88549 -14.58913 -14.31680 -14.20397 -14.15837 -14.03479 -13.87703 -13.83264 -13.43691 -13.42481 -13.21358 -13.16330 -13.13928 -13.03047 -13.02421 -12.45539 -12.34953 -12.25163 -12.18458 -11.81494 -11.72528 -11.42216 -11.24671 -10.85182 -10.80776 -10.73429 -10.06859 -9.77779 -9.46008 -8.68170 -0.74503 0.25095 0.65364 0.72466 1.00043 1.19002 1.31434 1.37568 1.49629 1.65074 1.65907 1.86689 1.89893 1.93101 2.15760 2.23405 2.57295 3.37754 3.54650 3.61557 3.73672 3.95068 4.06556 4.23860 4.24003 4.46263 4.49597 4.55379 4.66942 4.68705 4.71822 4.74703 4.79339 4.82869 4.83767 4.84819 4.86999 4.88488 4.98026 4.99921 5.29848 5.39477 5.51172 5.60327 5.65328 5.70594 6.02775 6.25796 6.54823 6.63974 6.96613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.104 4.104 3 C -0.235 4.235 4 C -0.047 4.047 5 O -0.544 6.544 6 Si 0.946 3.054 7 H -0.256 1.256 8 H -0.250 1.250 9 H -0.227 1.227 10 S 0.236 5.764 11 C -0.278 4.278 12 C 0.588 3.412 13 O -0.554 6.554 14 N -0.625 5.625 15 C -0.027 4.027 16 C 0.037 3.963 17 N -0.338 5.338 18 C -0.190 4.190 19 Si 1.094 2.906 20 C -0.475 4.475 21 C -0.454 4.454 22 C -0.459 4.459 23 N -0.315 5.315 24 C 0.024 3.976 25 C -0.051 4.051 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.139 0.861 30 H 0.387 0.613 31 H 0.421 0.579 32 H 0.222 0.778 33 H 0.104 0.896 34 H 0.134 0.866 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.045 0.955 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.184 0.816 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.943 7.643 -0.543 9.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.117 4.117 3 C -0.355 4.355 4 C -0.159 4.159 5 O -0.350 6.350 6 Si 0.766 3.234 7 H -0.180 1.180 8 H -0.174 1.174 9 H -0.149 1.149 10 S 0.506 5.494 11 C -0.398 4.398 12 C 0.376 3.624 13 O -0.433 6.433 14 N -0.270 5.270 15 C -0.131 4.131 16 C -0.113 4.113 17 N -0.120 5.120 18 C -0.354 4.354 19 Si 1.283 2.717 20 C -0.580 4.580 21 C -0.563 4.563 22 C -0.567 4.567 23 N -0.139 5.139 24 C -0.161 4.161 25 C -0.085 4.085 26 H 0.104 0.896 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.156 0.844 30 H 0.237 0.763 31 H 0.259 0.741 32 H 0.239 0.761 33 H 0.122 0.878 34 H 0.152 0.848 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.108 0.892 44 H 0.201 0.799 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.471 7.080 -1.239 9.671 hybrid contribution -1.737 -0.631 0.286 1.870 sum 4.734 6.448 -0.953 8.056 Atomic orbital electron populations 1.20687 0.87837 1.03995 1.03629 1.18828 0.99166 0.90414 1.03287 1.24728 0.99027 1.01434 1.10295 1.24679 1.06289 0.88807 0.96127 1.86566 1.30890 1.79387 1.38206 0.85742 0.81577 0.79722 0.76398 1.18018 1.17369 1.14920 1.82509 1.02703 0.96075 1.68104 1.24267 0.97494 0.97744 1.20313 1.17129 0.81684 0.87418 0.76144 1.90732 1.81783 1.19633 1.51195 1.42403 1.03357 1.09007 1.72257 1.17751 0.88634 0.88833 1.17932 1.22545 0.90982 0.92517 1.05247 1.48312 1.06335 1.02973 1.54378 1.27432 0.76142 1.08151 1.23660 0.78269 0.65687 0.65708 0.62003 1.26514 1.07402 1.15381 1.08657 1.26134 1.19080 1.05835 1.05249 1.26227 1.04758 1.17014 1.08678 1.77398 0.95690 1.15618 1.25218 1.24305 0.97489 0.92450 1.01809 1.20829 0.91067 1.00535 0.96044 0.89634 0.90739 0.90145 0.84355 0.76341 0.74075 0.76126 0.87768 0.84809 0.91862 0.91246 0.93546 0.89581 0.90718 0.90924 0.92141 0.90955 0.89205 0.79915 0.83068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.31 9.48 71.24 0.68 0.98 16 2 C -0.10 -0.07 5.78 -21.05 -0.12 -0.19 16 3 C -0.24 0.31 4.83 24.68 0.12 0.43 16 4 C -0.05 0.17 2.77 71.24 0.20 0.37 16 5 O -0.54 1.37 12.88 -148.98 -1.92 -0.55 16 6 Si 0.95 -3.77 27.41 68.60 1.88 -1.89 16 7 H -0.26 0.34 7.11 99.48 0.71 1.04 16 8 H -0.25 0.37 7.11 99.48 0.71 1.07 16 9 H -0.23 1.32 7.11 99.48 0.71 2.03 16 10 S 0.24 -0.71 20.83 -56.49 -1.18 -1.89 16 11 C -0.28 -1.00 6.45 24.07 0.16 -0.84 16 12 C 0.59 4.53 7.75 86.42 0.67 5.20 16 13 O -0.55 -8.33 13.99 -4.45 -0.06 -8.40 16 14 N -0.62 -1.57 5.47 -307.69 -1.68 -3.25 16 15 C -0.03 -0.15 6.90 37.63 0.26 0.11 16 16 C 0.04 -0.03 11.44 83.50 0.96 0.93 16 17 N -0.34 -0.78 3.01 -182.89 -0.55 -1.33 16 18 C -0.19 0.99 5.59 127.77 0.71 1.70 16 19 Si 1.09 -7.62 12.79 68.60 0.88 -6.74 16 20 C -0.48 -0.70 8.65 113.37 0.98 0.28 16 21 C -0.45 3.42 8.65 113.37 0.98 4.40 16 22 C -0.46 2.90 8.65 113.37 0.98 3.88 16 23 N -0.32 -3.40 12.56 -56.76 -0.71 -4.11 16 24 C 0.02 0.29 10.84 85.33 0.92 1.21 16 25 C -0.05 -0.19 9.78 21.72 0.21 0.02 16 26 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 27 H 0.07 -0.23 8.10 -2.39 -0.02 -0.25 16 28 H 0.08 -0.33 6.99 -2.39 -0.02 -0.35 16 29 H 0.14 -0.76 6.25 -2.39 -0.01 -0.78 16 30 H 0.39 -3.52 8.70 -74.06 -0.64 -4.17 16 31 H 0.42 -2.00 7.94 -92.71 -0.74 -2.74 16 32 H 0.22 -2.39 8.06 -2.91 -0.02 -2.41 16 33 H 0.10 -0.44 7.96 -2.39 -0.02 -0.46 16 34 H 0.13 -1.58 7.96 -2.38 -0.02 -1.60 16 35 H 0.06 0.16 7.96 -2.38 -0.02 0.14 16 36 H 0.07 0.05 7.96 -2.39 -0.02 0.03 16 37 H 0.05 0.31 7.96 -2.39 -0.02 0.29 16 38 H 0.09 -0.84 7.96 -2.38 -0.02 -0.85 16 39 H 0.07 -0.49 7.96 -2.39 -0.02 -0.51 16 40 H 0.07 -0.50 7.96 -2.38 -0.02 -0.52 16 41 H 0.06 -0.22 7.96 -2.39 -0.02 -0.24 16 42 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 43 H 0.09 -0.88 7.96 -2.39 -0.02 -0.90 16 44 H 0.18 2.79 5.91 -2.91 -0.02 2.78 16 45 H 0.15 0.64 8.06 -2.91 -0.02 0.62 16 Total: 0.00 -23.05 393.58 4.76 -18.29 By element: Atomic # 1 Polarization: -9.03 SS G_CDS: 0.40 Total: -8.63 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: 7.70 Total: 18.50 kcal Atomic # 7 Polarization: -5.74 SS G_CDS: -2.95 Total: -8.69 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -1.98 Total: -8.95 kcal Atomic # 14 Polarization: -11.39 SS G_CDS: 2.76 Total: -8.63 kcal Atomic # 16 Polarization: -0.71 SS G_CDS: -1.18 Total: -1.89 kcal Total: -23.05 4.76 -18.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_6739946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.709 kcal (2) G-P(sol) polarization free energy of solvation -23.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds