Wall clock time and date at job start Sun Mar 7 2021 10:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86303 * 109.47161 * 2 1 4 4 C 1.86299 * 109.47217 * 119.99499 * 2 1 3 5 5 C 1.86293 * 109.47364 * 239.99588 * 2 1 3 6 6 N 1.46505 * 109.46974 * 60.00146 * 5 2 1 7 7 C 1.35834 * 126.05371 * 90.00220 * 6 5 2 8 8 C 1.35763 * 107.55781 * 179.97438 * 7 6 5 9 9 N 1.40744 * 126.08087 * 179.97438 * 8 7 6 10 10 C 1.34770 * 119.99912 * 180.02562 * 9 8 7 11 11 O 1.21662 * 120.00354 * 0.02562 * 10 9 8 12 12 C 1.47192 * 119.99838 * 179.97438 * 10 9 8 13 13 C 1.36009 * 123.45935 * 0.02684 * 12 10 9 14 14 S 1.70455 * 110.81561 * 179.97438 * 13 12 10 15 15 C 1.75504 * 92.44511 * 0.02562 * 14 13 12 16 16 C 1.50696 * 124.70997 * 180.02562 * 15 14 13 17 17 O 1.42905 * 109.47208 * 120.02360 * 16 15 14 18 18 Si 1.86303 * 109.47393 * 0.02562 * 16 15 14 19 19 H 1.48495 * 109.46789 * 300.00228 * 18 16 15 20 20 H 1.48495 * 109.46897 * 60.00248 * 18 16 15 21 21 H 1.48496 * 109.47021 * 180.02562 * 18 16 15 22 22 C 1.32779 * 110.57564 * 359.71009 * 15 14 13 23 23 C 1.40261 * 107.83696 * 0.02562 * 8 7 6 24 24 N 1.30830 * 108.33996 * 359.75058 * 23 8 7 25 25 H 1.09001 * 109.46570 * 60.00396 * 1 2 3 26 26 H 1.09001 * 109.47076 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47204 * 300.00331 * 1 2 3 28 28 H 1.09000 * 109.47332 * 59.99747 * 3 2 1 29 29 H 1.09002 * 109.47176 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.46801 * 299.99758 * 3 2 1 31 31 H 1.09001 * 109.47058 * 60.00032 * 4 2 1 32 32 H 1.09002 * 109.47782 * 180.02562 * 4 2 1 33 33 H 1.09000 * 109.47172 * 300.00189 * 4 2 1 34 34 H 1.09002 * 109.47236 * 180.02562 * 5 2 1 35 35 H 1.08998 * 109.47688 * 299.99834 * 5 2 1 36 36 H 1.07993 * 126.22193 * 359.93791 * 7 6 5 37 37 H 0.96998 * 119.99826 * 0.02562 * 9 8 7 38 38 H 1.07997 * 124.59041 * 0.02562 * 13 12 10 39 39 H 1.09004 * 109.47197 * 240.01788 * 16 15 14 40 40 H 0.96704 * 114.00166 * 179.97438 * 17 16 15 41 41 H 1.07997 * 123.45970 * 180.26652 * 22 15 14 42 42 H 1.07994 * 125.82643 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8781 1.5212 5 6 2.4841 -0.8783 -1.5210 6 7 1.9957 -0.1877 -2.7172 7 6 2.6260 0.8231 -3.3700 8 6 1.8454 1.1810 -4.4216 9 7 2.1291 2.1928 -5.3580 10 6 1.2630 2.4468 -6.3588 11 8 0.2357 1.8018 -6.4526 12 6 1.5594 3.5053 -7.3376 13 6 2.6846 4.2684 -7.2993 14 16 2.6995 5.3904 -8.5824 15 6 1.1537 4.8266 -9.1930 16 6 0.4557 5.3837 -10.4067 17 8 0.2787 4.3457 -11.3728 18 14 1.4867 6.7491 -11.1441 19 1 1.6706 7.8277 -10.1402 20 1 2.8124 6.2096 -11.5397 21 1 0.7984 7.2984 -12.3398 22 6 0.6880 3.8364 -8.4408 23 6 0.7055 0.3638 -4.4083 24 7 0.7988 -0.4563 -3.3932 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 2.1207 2.2704 0.8899 29 1 3.5740 1.7565 0.0005 30 1 2.1207 2.2703 -0.8901 31 1 2.1207 -1.9058 1.5213 32 1 3.5740 -0.8777 1.5215 33 1 2.1207 -0.3642 2.4111 34 1 3.5741 -0.8787 -1.5207 35 1 2.1208 -1.9060 -1.5210 36 1 3.5750 1.2627 -3.1011 37 1 2.9480 2.7072 -5.2829 38 1 3.4635 4.1754 -6.5570 39 1 -0.5176 5.7795 -10.1164 40 1 -0.1657 4.6332 -12.1822 41 1 -0.2478 3.3326 -8.6323 42 1 -0.1079 0.4019 -5.1177 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608520_6894386.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:55:38 Heat of formation + Delta-G solvation = 9.039305 kcal Electronic energy + Delta-G solvation = -23923.299769 eV Core-core repulsion = 20348.678353 eV Total energy + Delta-G solvation = -3574.621416 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.099 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.21826 -40.62297 -38.67490 -37.17779 -35.79746 -33.63647 -32.05571 -30.23919 -29.66506 -28.56649 -28.42644 -27.21575 -26.96677 -25.42138 -22.78276 -22.06508 -21.27938 -20.16209 -18.98212 -18.52997 -17.98729 -17.88326 -16.58380 -16.51700 -16.41475 -15.85153 -15.73217 -15.08789 -14.91442 -14.73402 -14.34061 -14.29827 -14.13597 -14.03026 -13.92445 -13.81820 -13.73738 -13.60668 -13.51427 -13.39986 -13.23336 -13.15037 -12.70901 -12.42875 -12.18915 -12.11502 -11.98411 -11.60201 -11.29851 -11.02457 -10.91683 -10.78353 -10.53585 -9.96754 -9.93964 -9.52354 -8.50881 -0.37927 0.27846 0.64474 0.73269 0.96887 1.06906 1.33180 1.36057 1.38490 1.52854 1.69595 1.79832 1.88022 1.92722 2.25569 2.43243 2.56441 3.27142 3.60424 3.71727 3.81767 3.90192 3.98142 4.24898 4.32741 4.36663 4.50902 4.57420 4.59729 4.62562 4.64321 4.67212 4.76314 4.78990 4.81341 4.83593 5.07764 5.20281 5.28242 5.33986 5.41184 5.59528 5.98446 6.08186 6.43798 6.48195 6.87129 7.22966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.446 4.446 2 Si 1.020 2.980 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.169 4.169 6 N -0.344 5.344 7 C 0.014 3.986 8 C -0.002 4.002 9 N -0.638 5.638 10 C 0.581 3.419 11 O -0.520 6.520 12 C -0.151 4.151 13 C -0.205 4.205 14 S 0.188 5.812 15 C -0.199 4.199 16 C -0.040 4.040 17 O -0.541 6.541 18 Si 0.887 3.113 19 H -0.231 1.231 20 H -0.230 1.230 21 H -0.227 1.227 22 C -0.049 4.049 23 C 0.048 3.952 24 N -0.281 5.281 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.175 0.825 37 H 0.407 0.593 38 H 0.173 0.827 39 H 0.088 0.912 40 H 0.384 0.616 41 H 0.160 0.840 42 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.405 4.440 1.332 6.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.554 4.554 2 Si 1.214 2.786 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.334 4.334 6 N -0.127 5.127 7 C -0.135 4.135 8 C -0.107 4.107 9 N -0.283 5.283 10 C 0.367 3.633 11 O -0.396 6.396 12 C -0.169 4.169 13 C -0.343 4.343 14 S 0.455 5.545 15 C -0.315 4.315 16 C -0.152 4.152 17 O -0.347 6.347 18 Si 0.706 3.294 19 H -0.154 1.154 20 H -0.152 1.152 21 H -0.150 1.150 22 C -0.077 4.077 23 C -0.138 4.138 24 N -0.104 5.104 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.193 0.807 37 H 0.243 0.757 38 H 0.190 0.810 39 H 0.105 0.895 40 H 0.232 0.768 41 H 0.177 0.823 42 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 5.016 4.394 1.571 6.850 hybrid contribution -0.418 -0.306 -0.156 0.541 sum 4.597 4.088 1.415 6.312 Atomic orbital electron populations 1.26069 1.20044 1.04826 1.04508 0.79369 0.68120 0.67069 0.64054 1.26128 1.06097 1.18653 1.04883 1.26099 1.06361 1.08338 1.15005 1.26954 1.04412 1.05152 0.96927 1.47978 1.15774 1.26831 1.22115 1.21848 1.00176 0.95882 0.95572 1.17631 0.98621 0.98667 0.95772 1.42566 1.23865 1.35294 1.26574 1.17523 0.82993 0.82681 0.80056 1.90707 1.25642 1.49647 1.73622 1.20083 0.96572 1.00674 0.99613 1.25704 1.02016 1.01545 1.05070 1.83177 1.16987 1.34439 1.19906 1.23559 1.00024 1.05171 1.02788 1.23968 1.04040 0.97943 0.89292 1.86530 1.82736 1.35724 1.29756 0.86371 0.81812 0.78009 0.83201 1.15390 1.15226 1.14982 1.21000 1.00380 0.95131 0.91228 1.24494 0.98963 0.93183 0.97186 1.77461 1.01319 1.23113 1.08530 0.90971 0.91026 0.91240 0.90757 0.91147 0.91103 0.90857 0.90992 0.90587 0.88350 0.87697 0.80744 0.75717 0.80988 0.89475 0.76838 0.82286 0.77823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 -0.02 8.65 101.05 0.87 0.85 16 2 Si 1.02 -2.90 12.79 -169.99 -2.17 -5.07 16 3 C -0.45 0.97 8.65 101.05 0.87 1.84 16 4 C -0.45 1.22 8.65 101.05 0.87 2.10 16 5 C -0.17 0.27 5.59 59.85 0.33 0.60 16 6 N -0.34 -0.54 3.01 -9.16 -0.03 -0.56 16 7 C 0.01 0.01 11.44 -16.67 -0.19 -0.18 16 8 C 0.00 -0.01 6.90 -83.89 -0.58 -0.59 16 9 N -0.64 -0.53 5.44 -11.07 -0.06 -0.59 16 10 C 0.58 1.85 7.76 -12.63 -0.10 1.75 16 11 O -0.52 -3.32 13.95 5.22 0.07 -3.25 16 12 C -0.15 -0.24 5.98 -104.63 -0.63 -0.87 16 13 C -0.21 0.20 10.38 29.93 0.31 0.51 16 14 S 0.19 -0.09 20.18 -107.50 -2.17 -2.26 16 15 C -0.20 -0.19 5.72 -36.18 -0.21 -0.40 16 16 C -0.04 0.03 2.94 36.00 0.11 0.14 16 17 O -0.54 0.04 12.82 -35.23 -0.45 -0.41 16 18 Si 0.89 -1.16 26.19 -169.99 -4.45 -5.61 16 19 H -0.23 0.24 7.11 56.52 0.40 0.65 16 20 H -0.23 0.00 7.11 56.52 0.40 0.40 16 21 H -0.23 0.36 7.11 56.52 0.40 0.76 16 22 C -0.05 -0.11 9.91 -39.02 -0.39 -0.49 16 23 C 0.05 0.23 10.84 -17.22 -0.19 0.05 16 24 N -0.28 -1.33 12.56 30.70 0.39 -0.94 16 25 H 0.07 0.15 7.96 -51.93 -0.41 -0.27 16 26 H 0.07 0.02 7.96 -51.93 -0.41 -0.39 16 27 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 28 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 29 H 0.07 -0.21 7.96 -51.93 -0.41 -0.63 16 30 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 31 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 32 H 0.07 -0.23 7.96 -51.93 -0.41 -0.64 16 33 H 0.08 -0.18 7.96 -51.93 -0.41 -0.60 16 34 H 0.10 -0.37 7.96 -51.93 -0.41 -0.79 16 35 H 0.10 -0.15 7.96 -51.93 -0.41 -0.57 16 36 H 0.18 -0.58 8.06 -52.49 -0.42 -1.01 16 37 H 0.41 -1.13 7.32 -40.82 -0.30 -1.42 16 38 H 0.17 -0.75 7.01 -52.49 -0.37 -1.12 16 39 H 0.09 -0.23 7.96 -51.93 -0.41 -0.64 16 40 H 0.38 -1.79 8.74 45.56 0.40 -1.39 16 41 H 0.16 0.42 8.06 -52.49 -0.42 0.00 16 42 H 0.21 1.17 5.91 -52.49 -0.31 0.86 16 LS Contribution 372.34 15.07 5.61 5.61 Total: 0.00 -9.30 372.34 -7.35 -16.64 By element: Atomic # 1 Polarization: -3.68 SS G_CDS: -5.18 Total: -8.87 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 1.10 Total: 5.31 kcal Atomic # 7 Polarization: -2.39 SS G_CDS: 0.30 Total: -2.10 kcal Atomic # 8 Polarization: -3.27 SS G_CDS: -0.38 Total: -3.65 kcal Atomic # 14 Polarization: -4.06 SS G_CDS: -6.63 Total: -10.68 kcal Atomic # 16 Polarization: -0.09 SS G_CDS: -2.17 Total: -2.26 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -9.30 -7.35 -16.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_6894386.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.683 kcal (2) G-P(sol) polarization free energy of solvation -9.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds