Wall clock time and date at job start Sun Mar 7 2021 10:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86303 * 109.47161 * 2 1 4 4 C 1.86299 * 109.47217 * 119.99499 * 2 1 3 5 5 C 1.86293 * 109.47364 * 239.99588 * 2 1 3 6 6 N 1.46505 * 109.46974 * 60.00146 * 5 2 1 7 7 C 1.35834 * 126.05371 * 90.00220 * 6 5 2 8 8 C 1.35763 * 107.55781 * 179.97438 * 7 6 5 9 9 N 1.40744 * 126.08087 * 179.97438 * 8 7 6 10 10 C 1.34770 * 119.99912 * 180.02562 * 9 8 7 11 11 O 1.21662 * 120.00354 * 0.02562 * 10 9 8 12 12 C 1.47192 * 119.99838 * 179.97438 * 10 9 8 13 13 C 1.36009 * 123.45935 * 0.02684 * 12 10 9 14 14 S 1.70455 * 110.81561 * 179.97438 * 13 12 10 15 15 C 1.75504 * 92.44511 * 0.02562 * 14 13 12 16 16 C 1.50696 * 124.70997 * 180.02562 * 15 14 13 17 17 O 1.42905 * 109.47208 * 120.02360 * 16 15 14 18 18 Si 1.86303 * 109.47393 * 0.02562 * 16 15 14 19 19 H 1.48495 * 109.46789 * 300.00228 * 18 16 15 20 20 H 1.48495 * 109.46897 * 60.00248 * 18 16 15 21 21 H 1.48496 * 109.47021 * 180.02562 * 18 16 15 22 22 C 1.32779 * 110.57564 * 359.71009 * 15 14 13 23 23 C 1.40261 * 107.83696 * 0.02562 * 8 7 6 24 24 N 1.30830 * 108.33996 * 359.75058 * 23 8 7 25 25 H 1.09001 * 109.46570 * 60.00396 * 1 2 3 26 26 H 1.09001 * 109.47076 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47204 * 300.00331 * 1 2 3 28 28 H 1.09000 * 109.47332 * 59.99747 * 3 2 1 29 29 H 1.09002 * 109.47176 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.46801 * 299.99758 * 3 2 1 31 31 H 1.09001 * 109.47058 * 60.00032 * 4 2 1 32 32 H 1.09002 * 109.47782 * 180.02562 * 4 2 1 33 33 H 1.09000 * 109.47172 * 300.00189 * 4 2 1 34 34 H 1.09002 * 109.47236 * 180.02562 * 5 2 1 35 35 H 1.08998 * 109.47688 * 299.99834 * 5 2 1 36 36 H 1.07993 * 126.22193 * 359.93791 * 7 6 5 37 37 H 0.96998 * 119.99826 * 0.02562 * 9 8 7 38 38 H 1.07997 * 124.59041 * 0.02562 * 13 12 10 39 39 H 1.09004 * 109.47197 * 240.01788 * 16 15 14 40 40 H 0.96704 * 114.00166 * 179.97438 * 17 16 15 41 41 H 1.07997 * 123.45970 * 180.26652 * 22 15 14 42 42 H 1.07994 * 125.82643 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8781 1.5212 5 6 2.4841 -0.8783 -1.5210 6 7 1.9957 -0.1877 -2.7172 7 6 2.6260 0.8231 -3.3700 8 6 1.8454 1.1810 -4.4216 9 7 2.1291 2.1928 -5.3580 10 6 1.2630 2.4468 -6.3588 11 8 0.2357 1.8018 -6.4526 12 6 1.5594 3.5053 -7.3376 13 6 2.6846 4.2684 -7.2993 14 16 2.6995 5.3904 -8.5824 15 6 1.1537 4.8266 -9.1930 16 6 0.4557 5.3837 -10.4067 17 8 0.2787 4.3457 -11.3728 18 14 1.4867 6.7491 -11.1441 19 1 1.6706 7.8277 -10.1402 20 1 2.8124 6.2096 -11.5397 21 1 0.7984 7.2984 -12.3398 22 6 0.6880 3.8364 -8.4408 23 6 0.7055 0.3638 -4.4083 24 7 0.7988 -0.4563 -3.3932 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 2.1207 2.2704 0.8899 29 1 3.5740 1.7565 0.0005 30 1 2.1207 2.2703 -0.8901 31 1 2.1207 -1.9058 1.5213 32 1 3.5740 -0.8777 1.5215 33 1 2.1207 -0.3642 2.4111 34 1 3.5741 -0.8787 -1.5207 35 1 2.1208 -1.9060 -1.5210 36 1 3.5750 1.2627 -3.1011 37 1 2.9480 2.7072 -5.2829 38 1 3.4635 4.1754 -6.5570 39 1 -0.5176 5.7795 -10.1164 40 1 -0.1657 4.6332 -12.1822 41 1 -0.2478 3.3326 -8.6323 42 1 -0.1079 0.4019 -5.1177 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_6894386.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:55:37 Heat of formation + Delta-G solvation = 10.806882 kcal Electronic energy + Delta-G solvation = -23923.223121 eV Core-core repulsion = 20348.678353 eV Total energy + Delta-G solvation = -3574.544768 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.099 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.36067 -40.77264 -38.68530 -37.18036 -35.97408 -33.72537 -32.08260 -30.31981 -29.51452 -28.37518 -28.33258 -27.22309 -26.95129 -25.49550 -22.92114 -22.12321 -21.39136 -20.25477 -19.00559 -18.48181 -18.06897 -17.90485 -16.66324 -16.61337 -16.36207 -15.94577 -15.82313 -15.22163 -14.91039 -14.71827 -14.19972 -14.15331 -14.08758 -13.95536 -13.89483 -13.82614 -13.78353 -13.63839 -13.41615 -13.20682 -13.13722 -13.01936 -12.66751 -12.38635 -12.19143 -12.10748 -11.96409 -11.77187 -11.37999 -10.99502 -10.84519 -10.80021 -10.46513 -10.03702 -9.92616 -9.53568 -8.61791 -0.38035 0.31307 0.64399 0.66289 0.91274 1.11054 1.35722 1.46881 1.48579 1.67278 1.70910 1.88080 1.89142 2.01023 2.22189 2.41124 2.58154 3.39158 3.69724 3.75616 3.85036 3.98847 4.02928 4.24845 4.28459 4.46954 4.58201 4.68179 4.70705 4.72382 4.74014 4.75610 4.83520 4.84635 4.87620 4.89063 5.00521 5.08861 5.17197 5.51569 5.60908 5.66098 5.75955 6.07549 6.41114 6.68800 6.77834 7.12771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.476 4.476 2 Si 1.096 2.904 3 C -0.458 4.458 4 C -0.454 4.454 5 C -0.191 4.191 6 N -0.339 5.339 7 C 0.035 3.965 8 C -0.025 4.025 9 N -0.621 5.621 10 C 0.575 3.425 11 O -0.566 6.566 12 C -0.175 4.175 13 C -0.184 4.184 14 S 0.216 5.784 15 C -0.212 4.212 16 C -0.048 4.048 17 O -0.563 6.563 18 Si 0.915 3.085 19 H -0.231 1.231 20 H -0.248 1.248 21 H -0.221 1.221 22 C -0.072 4.072 23 C 0.021 3.979 24 N -0.318 5.318 25 H 0.045 0.955 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.133 0.867 35 H 0.102 0.898 36 H 0.223 0.777 37 H 0.426 0.574 38 H 0.211 0.789 39 H 0.102 0.898 40 H 0.401 0.599 41 H 0.140 0.860 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.648 5.640 2.423 9.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.580 4.580 2 Si 1.285 2.715 3 C -0.566 4.566 4 C -0.563 4.563 5 C -0.354 4.354 6 N -0.121 5.121 7 C -0.114 4.114 8 C -0.129 4.129 9 N -0.267 5.267 10 C 0.363 3.637 11 O -0.446 6.446 12 C -0.193 4.193 13 C -0.322 4.322 14 S 0.483 5.517 15 C -0.328 4.328 16 C -0.160 4.160 17 O -0.373 6.373 18 Si 0.735 3.265 19 H -0.154 1.154 20 H -0.172 1.172 21 H -0.143 1.143 22 C -0.101 4.101 23 C -0.164 4.164 24 N -0.142 5.142 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.151 0.849 35 H 0.121 0.879 36 H 0.239 0.761 37 H 0.265 0.735 38 H 0.227 0.773 39 H 0.119 0.881 40 H 0.252 0.748 41 H 0.157 0.843 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 8.225 5.599 2.656 10.299 hybrid contribution -1.426 -0.696 -0.449 1.650 sum 6.799 4.903 2.207 8.668 Atomic orbital electron populations 1.26524 1.24519 1.03799 1.03156 0.78239 0.63919 0.66273 0.63055 1.26216 1.07469 1.18587 1.04318 1.26136 1.07334 1.08212 1.14630 1.27425 1.06696 1.05152 0.96118 1.48302 1.14733 1.26834 1.22277 1.22541 1.00759 0.94402 0.93736 1.17784 0.98551 0.99401 0.97190 1.42379 1.24061 1.34799 1.25482 1.17843 0.82695 0.82635 0.80559 1.90691 1.27651 1.51396 1.74851 1.19943 0.97930 1.01650 0.99816 1.26097 1.01444 0.99672 1.05036 1.83092 1.15477 1.33784 1.19379 1.23874 1.00933 1.04828 1.03169 1.24192 1.05081 0.97875 0.88828 1.86482 1.83206 1.36708 1.30870 0.85982 0.80386 0.77090 0.83079 1.15438 1.17176 1.14313 1.20985 1.00431 0.96164 0.92491 1.24300 0.99826 0.94744 0.97490 1.77386 1.03446 1.24072 1.09289 0.93595 0.91928 0.91238 0.90971 0.89201 0.92106 0.90963 0.89580 0.90713 0.84876 0.87930 0.76053 0.73478 0.77258 0.88080 0.74816 0.84254 0.80177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 -0.90 8.65 113.37 0.98 0.09 16 2 Si 1.10 -7.34 12.79 68.60 0.88 -6.46 16 3 C -0.46 2.86 8.65 113.37 0.98 3.84 16 4 C -0.45 3.31 8.65 113.37 0.98 4.29 16 5 C -0.19 0.89 5.59 127.77 0.71 1.61 16 6 N -0.34 -0.96 3.01 -182.91 -0.55 -1.51 16 7 C 0.03 -0.02 11.44 83.50 0.96 0.94 16 8 C -0.02 -0.14 6.90 37.63 0.26 0.12 16 9 N -0.62 -1.20 5.44 -307.16 -1.67 -2.87 16 10 C 0.57 4.84 7.76 86.60 0.67 5.51 16 11 O -0.57 -9.55 13.95 -4.23 -0.06 -9.61 16 12 C -0.18 -0.77 5.98 -19.87 -0.12 -0.89 16 13 C -0.18 0.54 10.38 67.30 0.70 1.24 16 14 S 0.22 -0.38 20.18 -56.49 -1.14 -1.52 16 15 C -0.21 -0.60 5.72 24.51 0.14 -0.46 16 16 C -0.05 0.04 2.94 71.23 0.21 0.25 16 17 O -0.56 -0.51 12.82 -148.98 -1.91 -2.42 16 18 Si 0.92 -2.70 26.19 68.60 1.80 -0.91 16 19 H -0.23 0.69 7.11 99.48 0.71 1.40 16 20 H -0.25 0.01 7.11 99.48 0.71 0.72 16 21 H -0.22 0.90 7.11 99.48 0.71 1.60 16 22 C -0.07 -0.48 9.91 22.67 0.22 -0.26 16 23 C 0.02 0.27 10.84 85.33 0.92 1.20 16 24 N -0.32 -3.71 12.56 -56.77 -0.71 -4.42 16 25 H 0.04 0.33 7.96 -2.39 -0.02 0.31 16 26 H 0.06 0.19 7.96 -2.39 -0.02 0.17 16 27 H 0.07 0.07 7.96 -2.39 -0.02 0.05 16 28 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 29 H 0.09 -0.88 7.96 -2.39 -0.02 -0.89 16 30 H 0.06 -0.22 7.96 -2.38 -0.02 -0.23 16 31 H 0.07 -0.47 7.96 -2.39 -0.02 -0.49 16 32 H 0.09 -0.82 7.96 -2.39 -0.02 -0.84 16 33 H 0.07 -0.47 7.96 -2.39 -0.02 -0.49 16 34 H 0.13 -1.51 7.96 -2.39 -0.02 -1.53 16 35 H 0.10 -0.37 7.96 -2.39 -0.02 -0.38 16 36 H 0.22 -2.44 8.06 -2.91 -0.02 -2.46 16 37 H 0.43 -3.04 7.32 -92.71 -0.68 -3.72 16 38 H 0.21 -2.45 7.01 -2.91 -0.02 -2.47 16 39 H 0.10 -0.45 7.96 -2.38 -0.02 -0.47 16 40 H 0.40 -3.46 8.74 -74.05 -0.65 -4.10 16 41 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 42 H 0.18 3.04 5.91 -2.91 -0.02 3.02 16 Total: 0.00 -26.89 372.34 4.73 -22.16 By element: Atomic # 1 Polarization: -10.40 SS G_CDS: 0.48 Total: -9.92 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: 7.62 Total: 17.47 kcal Atomic # 7 Polarization: -5.86 SS G_CDS: -2.94 Total: -8.80 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -1.97 Total: -12.03 kcal Atomic # 14 Polarization: -10.04 SS G_CDS: 2.67 Total: -7.37 kcal Atomic # 16 Polarization: -0.38 SS G_CDS: -1.14 Total: -1.52 kcal Total: -26.89 4.73 -22.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_6894386.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.967 kcal (2) G-P(sol) polarization free energy of solvation -26.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds