Wall clock time and date at job start Sun Mar 7 2021 10:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86295 * 109.47424 * 2 1 4 4 C 1.86306 * 109.46892 * 239.99968 * 2 1 3 5 5 C 1.86298 * 109.46852 * 120.00204 * 2 1 3 6 6 N 1.46500 * 109.47226 * 59.99929 * 5 2 1 7 7 C 1.35811 * 126.05578 * 270.33253 * 6 5 2 8 8 C 1.35751 * 107.56900 * 180.15908 * 7 6 5 9 9 N 1.40759 * 126.08316 * 179.84573 * 8 7 6 10 10 C 1.34784 * 119.99856 * 179.71495 * 9 8 7 11 11 O 1.21301 * 119.99877 * 359.97438 * 10 9 8 12 12 C 1.50700 * 119.99961 * 179.97438 * 10 9 8 13 13 N 1.46497 * 109.47128 * 180.02562 * 12 10 9 14 14 C 1.36836 * 125.05704 * 265.02374 * 13 12 10 15 15 C 1.34242 * 109.93245 * 179.97438 * 14 13 12 16 16 C 1.50696 * 126.49680 * 180.02562 * 15 14 13 17 17 O 1.42908 * 109.47115 * 104.97425 * 16 15 14 18 18 Si 1.86298 * 109.47276 * 344.97502 * 16 15 14 19 19 H 1.48500 * 109.47040 * 59.99984 * 18 16 15 20 20 H 1.48503 * 109.47193 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47330 * 299.99794 * 18 16 15 22 22 C 1.46484 * 107.00126 * 359.97438 * 15 14 13 23 23 C 1.39595 * 134.04035 * 180.02562 * 22 15 14 24 24 C 1.36661 * 119.76771 * 179.97438 * 23 22 15 25 25 C 1.38790 * 120.52935 * 359.97438 * 24 23 22 26 26 C 1.37793 * 120.66229 * 0.02562 * 25 24 23 27 27 C 1.37691 * 125.06348 * 84.72226 * 13 12 10 28 28 C 1.40264 * 107.83584 * 359.57712 * 8 7 6 29 29 N 1.30830 * 108.32962 * 0.26572 * 28 8 7 30 30 H 1.09001 * 109.46526 * 300.00338 * 1 2 3 31 31 H 1.09002 * 109.46546 * 59.99435 * 1 2 3 32 32 H 1.08993 * 109.47270 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47098 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47066 * 300.00131 * 3 2 1 35 35 H 1.09000 * 109.46815 * 60.00141 * 3 2 1 36 36 H 1.08997 * 109.46828 * 300.00374 * 4 2 1 37 37 H 1.08997 * 109.47132 * 60.00154 * 4 2 1 38 38 H 1.09002 * 109.46901 * 180.02562 * 4 2 1 39 39 H 1.09000 * 109.47359 * 299.99842 * 5 2 1 40 40 H 1.09002 * 109.47170 * 179.97438 * 5 2 1 41 41 H 1.08007 * 126.21904 * 359.97438 * 7 6 5 42 42 H 0.96995 * 120.00073 * 359.97438 * 9 8 7 43 43 H 1.09004 * 109.46932 * 300.00223 * 12 10 9 44 44 H 1.08997 * 109.47392 * 59.99562 * 12 10 9 45 45 H 1.07993 * 125.03410 * 359.95892 * 14 13 12 46 46 H 1.09004 * 109.47445 * 224.97037 * 16 15 14 47 47 H 0.96702 * 113.99476 * 299.99864 * 17 16 15 48 48 H 1.08003 * 120.11624 * 359.97438 * 23 22 15 49 49 H 1.08000 * 119.73686 * 180.02562 * 24 23 22 50 50 H 1.07998 * 119.66740 * 180.02562 * 25 24 23 51 51 H 1.08005 * 120.10690 * 180.02562 * 26 25 24 52 52 H 1.08000 * 125.83087 * 180.22546 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5212 5 6 2.4840 -0.8783 1.5211 6 7 1.9956 -2.2595 1.5211 7 6 0.8297 -2.6951 2.0645 8 6 0.7548 -4.0342 1.8545 9 7 -0.2940 -4.8799 2.2621 10 6 -0.2447 -6.1975 1.9825 11 8 0.7033 -6.6543 1.3792 12 6 -1.3673 -7.1030 2.4194 13 7 -1.0784 -8.4764 1.9994 14 6 -1.5324 -9.0579 0.8470 15 6 -1.0860 -10.3213 0.7652 16 6 -1.3611 -11.2988 -0.3482 17 8 -0.1953 -11.4324 -1.1638 18 14 -2.7770 -10.6754 -1.3862 19 1 -2.4230 -9.3540 -1.9639 20 1 -3.0486 -11.6391 -2.4830 21 1 -3.9886 -10.5367 -0.5387 22 6 -0.2796 -10.5690 1.9627 23 6 0.4351 -11.6686 2.4411 24 6 1.1040 -11.5783 3.6293 25 6 1.0792 -10.4015 4.3647 26 6 0.3801 -9.3041 3.9112 27 6 -0.3047 -9.3724 2.7027 28 6 1.9055 -4.4242 1.1537 29 7 2.6456 -3.3637 0.9553 30 1 -0.3632 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.5742 1.7563 0.0005 34 1 2.1208 2.2702 -0.8899 35 1 2.1208 2.2702 0.8900 36 1 2.1206 -1.9059 -1.5212 37 1 2.1207 -0.3644 -2.4111 38 1 3.5740 -0.8787 -1.5210 39 1 2.1207 -0.3645 2.4111 40 1 3.5740 -0.8787 1.5209 41 1 0.0967 -2.0871 2.5740 42 1 -1.0540 -4.5138 2.7409 43 1 -1.4613 -7.0674 3.5047 44 1 -2.3000 -6.7717 1.9629 45 1 -2.1576 -8.5726 0.1123 46 1 -1.6209 -12.2688 0.0758 47 1 0.0941 -10.6062 -1.5745 48 1 0.4593 -12.5875 1.8741 49 1 1.6572 -12.4291 3.9987 50 1 1.6131 -10.3453 5.3018 51 1 0.3671 -8.3926 4.4906 52 1 2.1407 -5.4284 0.8334 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_9818708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:56:24 Heat of formation + Delta-G solvation = 49.297997 kcal Electronic energy + Delta-G solvation = -32976.165696 eV Core-core repulsion = 28681.184351 eV Total energy + Delta-G solvation = -4294.981345 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 386.169 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.60670 -42.23433 -40.42120 -38.08901 -37.61416 -35.93238 -34.17930 -33.61929 -31.58916 -30.52988 -30.22316 -29.56164 -28.84749 -28.39869 -28.32912 -26.92758 -25.67929 -23.83707 -23.18117 -22.52219 -22.00398 -21.15292 -20.63600 -18.79932 -18.30569 -18.20614 -17.69485 -17.24601 -16.67498 -16.61010 -16.40971 -16.13162 -15.99204 -15.62780 -15.46143 -15.13711 -14.79197 -14.72367 -14.50232 -14.40097 -14.20888 -14.16955 -14.07511 -13.85049 -13.83519 -13.67078 -13.43506 -13.24571 -13.22927 -13.15509 -13.03863 -12.69327 -12.53858 -12.32373 -12.18289 -12.13585 -11.88873 -11.77291 -11.66910 -11.39190 -11.09363 -10.86721 -10.81982 -10.53583 -10.26204 -10.05092 -9.14763 -8.64450 -8.61965 0.15406 0.65100 0.72925 1.23349 1.24597 1.27882 1.47172 1.50876 1.59872 1.65886 1.72066 1.86151 1.96590 2.03476 2.08427 2.26521 2.56060 2.97351 3.55789 3.66039 3.68443 3.74570 3.75313 3.84888 3.98992 4.06556 4.15286 4.23808 4.25670 4.32157 4.53362 4.56904 4.61862 4.66616 4.68478 4.71801 4.73253 4.73709 4.80978 4.81921 4.83178 4.85517 4.87297 4.92049 5.08179 5.16110 5.49138 5.52609 5.59255 5.64241 5.68333 5.74501 5.75351 5.76959 6.07471 6.19490 6.24756 6.45178 6.68132 6.76657 7.14296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.456 4.456 2 Si 1.094 2.906 3 C -0.456 4.456 4 C -0.476 4.476 5 C -0.190 4.190 6 N -0.340 5.340 7 C 0.034 3.966 8 C -0.023 4.023 9 N -0.622 5.622 10 C 0.487 3.513 11 O -0.556 6.556 12 C 0.094 3.906 13 N -0.466 5.466 14 C 0.064 3.936 15 C -0.217 4.217 16 C -0.053 4.053 17 O -0.561 6.561 18 Si 0.993 3.007 19 H -0.247 1.247 20 H -0.275 1.275 21 H -0.247 1.247 22 C -0.114 4.114 23 C -0.086 4.086 24 C -0.154 4.154 25 C -0.108 4.108 26 C -0.134 4.134 27 C 0.092 3.908 28 C 0.021 3.979 29 N -0.322 5.322 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.045 0.955 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.133 0.867 40 H 0.100 0.900 41 H 0.223 0.777 42 H 0.432 0.568 43 H 0.149 0.851 44 H 0.167 0.833 45 H 0.193 0.807 46 H 0.109 0.891 47 H 0.384 0.616 48 H 0.122 0.878 49 H 0.136 0.864 50 H 0.143 0.857 51 H 0.132 0.868 52 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.759 9.625 4.695 13.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.564 4.564 2 Si 1.284 2.716 3 C -0.565 4.565 4 C -0.580 4.580 5 C -0.354 4.354 6 N -0.122 5.122 7 C -0.115 4.115 8 C -0.127 4.127 9 N -0.270 5.270 10 C 0.273 3.727 11 O -0.433 6.433 12 C -0.031 4.031 13 N -0.149 5.149 14 C -0.061 4.061 15 C -0.225 4.225 16 C -0.163 4.163 17 O -0.367 6.367 18 Si 0.814 3.186 19 H -0.171 1.171 20 H -0.200 1.200 21 H -0.171 1.171 22 C -0.118 4.118 23 C -0.104 4.104 24 C -0.173 4.173 25 C -0.127 4.127 26 C -0.155 4.155 27 C -0.013 4.013 28 C -0.164 4.164 29 N -0.147 5.147 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.151 0.849 40 H 0.119 0.881 41 H 0.239 0.761 42 H 0.272 0.728 43 H 0.166 0.834 44 H 0.184 0.816 45 H 0.209 0.791 46 H 0.127 0.873 47 H 0.232 0.768 48 H 0.140 0.860 49 H 0.154 0.846 50 H 0.161 0.839 51 H 0.150 0.850 52 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -6.768 9.813 3.586 12.448 hybrid contribution 0.096 -0.298 0.428 0.530 sum -6.671 9.516 4.014 12.295 Atomic orbital electron populations 1.26185 1.20173 1.04378 1.05650 0.78265 0.66612 0.64692 0.62073 1.26154 1.06627 1.18109 1.05573 1.26527 1.06067 1.07491 1.17878 1.27400 1.06907 0.80740 1.20310 1.48281 1.14882 1.07198 1.41868 1.22580 0.92587 0.93553 1.02811 1.17747 0.93801 0.90582 1.10592 1.42536 1.21706 1.05966 1.56764 1.21592 0.88741 0.82776 0.79566 1.90704 1.35794 1.75471 1.41333 1.21924 0.97832 0.77811 1.05486 1.43393 1.42811 1.10227 1.18444 1.21986 1.01100 0.93193 0.89827 1.20833 1.06668 0.96359 0.98612 1.24534 0.96941 1.01859 0.92957 1.86464 1.46667 1.37887 1.65701 0.85152 0.75842 0.79567 0.77990 1.17076 1.19990 1.17078 1.19315 1.02128 0.94325 0.96018 1.20473 0.96295 0.97505 0.96154 1.20918 1.01745 0.99104 0.95563 1.21126 0.98693 0.92367 1.00504 1.20231 1.00458 1.00264 0.94532 1.18386 0.97580 0.89866 0.95438 1.24236 0.93406 0.98477 1.00288 1.77399 1.21993 0.93449 1.21831 0.89150 0.90972 0.91929 0.91066 0.90727 0.89571 0.93589 0.91245 0.92074 0.84864 0.88135 0.76064 0.72834 0.83356 0.81601 0.79062 0.87289 0.76803 0.85998 0.84600 0.83874 0.85026 0.80647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 3.56 8.65 113.37 0.98 4.54 16 2 Si 1.09 -8.46 12.78 68.60 0.88 -7.58 16 3 C -0.46 3.61 8.65 113.37 0.98 4.59 16 4 C -0.48 -0.47 8.65 113.37 0.98 0.52 16 5 C -0.19 1.11 5.59 127.77 0.71 1.82 16 6 N -0.34 -0.34 3.02 -182.92 -0.55 -0.89 16 7 C 0.03 -0.11 11.43 83.50 0.95 0.84 16 8 C -0.02 -0.04 6.90 37.62 0.26 0.22 16 9 N -0.62 3.09 5.47 -304.04 -1.66 1.43 16 10 C 0.49 -0.07 7.87 87.66 0.69 0.62 16 11 O -0.56 -6.19 13.57 -3.09 -0.04 -6.23 16 12 C 0.09 -0.68 6.48 85.63 0.55 -0.12 16 13 N -0.47 -0.97 2.27 -520.00 -1.18 -2.15 16 14 C 0.06 0.14 9.89 83.00 0.82 0.96 16 15 C -0.22 -1.35 5.57 -18.63 -0.10 -1.46 16 16 C -0.05 -0.20 3.06 71.23 0.22 0.01 16 17 O -0.56 -3.85 12.88 -148.98 -1.92 -5.77 16 18 Si 0.99 -0.28 26.08 68.60 1.79 1.51 16 19 H -0.25 0.38 7.03 99.48 0.70 1.08 16 20 H -0.27 -0.96 7.11 99.48 0.71 -0.26 16 21 H -0.25 0.22 7.11 99.48 0.71 0.92 16 22 C -0.11 -1.16 6.35 -20.20 -0.13 -1.28 16 23 C -0.09 -0.83 10.05 22.23 0.22 -0.61 16 24 C -0.15 -1.09 9.97 22.03 0.22 -0.87 16 25 C -0.11 -0.60 10.01 22.30 0.22 -0.38 16 26 C -0.13 -0.78 10.00 22.37 0.22 -0.56 16 27 C 0.09 0.70 6.80 39.03 0.27 0.97 16 28 C 0.02 0.21 10.84 85.33 0.92 1.14 16 29 N -0.32 -3.24 12.56 -56.77 -0.71 -3.95 16 30 H 0.09 -1.02 7.96 -2.39 -0.02 -1.04 16 31 H 0.07 -0.48 7.96 -2.39 -0.02 -0.50 16 32 H 0.06 -0.35 7.96 -2.39 -0.02 -0.37 16 33 H 0.07 -0.50 7.96 -2.39 -0.02 -0.51 16 34 H 0.07 -0.52 7.96 -2.39 -0.02 -0.54 16 35 H 0.09 -0.87 7.96 -2.39 -0.02 -0.89 16 36 H 0.04 0.28 7.96 -2.39 -0.02 0.26 16 37 H 0.07 0.01 7.96 -2.39 -0.02 -0.01 16 38 H 0.06 0.15 7.96 -2.39 -0.02 0.13 16 39 H 0.13 -1.66 7.96 -2.39 -0.02 -1.68 16 40 H 0.10 -0.43 7.96 -2.39 -0.02 -0.45 16 41 H 0.22 -3.03 8.06 -2.91 -0.02 -3.05 16 42 H 0.43 -6.31 8.83 -92.71 -0.82 -7.13 16 43 H 0.15 -1.89 8.14 -2.38 -0.02 -1.91 16 44 H 0.17 -2.61 8.12 -2.39 -0.02 -2.63 16 45 H 0.19 -0.84 6.29 -2.91 -0.02 -0.86 16 46 H 0.11 0.37 7.96 -2.38 -0.02 0.35 16 47 H 0.38 0.53 8.70 -74.06 -0.64 -0.12 16 48 H 0.12 1.02 8.06 -2.91 -0.02 0.99 16 49 H 0.14 0.40 8.06 -2.91 -0.02 0.38 16 50 H 0.14 0.09 8.06 -2.91 -0.02 0.07 16 51 H 0.13 0.15 8.06 -2.91 -0.02 0.12 16 52 H 0.18 2.62 5.92 -2.91 -0.02 2.60 16 Total: 0.00 -33.54 438.50 5.83 -27.71 By element: Atomic # 1 Polarization: -15.26 SS G_CDS: 0.23 Total: -15.03 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 9.00 Total: 10.96 kcal Atomic # 7 Polarization: -1.46 SS G_CDS: -4.11 Total: -5.57 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -1.96 Total: -12.00 kcal Atomic # 14 Polarization: -8.74 SS G_CDS: 2.67 Total: -6.07 kcal Total: -33.54 5.83 -27.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_9818708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.008 kcal (2) G-P(sol) polarization free energy of solvation -33.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds