Wall clock time and date at job start Sun Mar 7 2021 10:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36772 * 125.80265 * 2 1 4 4 C 1.47264 * 126.94089 * 0.02562 * 3 2 1 5 5 O 1.21656 * 119.99906 * 0.02562 * 4 3 2 6 6 N 1.34770 * 119.99996 * 179.97438 * 4 3 2 7 7 C 1.40741 * 120.00087 * 180.02562 * 6 4 3 8 8 C 1.35758 * 126.08007 * 180.02562 * 7 6 4 9 9 N 1.35838 * 107.55893 * 179.97438 * 8 7 6 10 10 C 1.46502 * 126.05705 * 179.97438 * 9 8 7 11 11 Si 1.86302 * 109.46872 * 89.99905 * 10 9 8 12 12 C 1.86297 * 109.47115 * 60.00738 * 11 10 9 13 13 C 1.86306 * 109.46889 * 180.02562 * 11 10 9 14 14 C 1.86298 * 109.47395 * 300.00058 * 11 10 9 15 15 N 1.40066 * 107.89024 * 359.97438 * 9 8 7 16 16 C 1.30830 * 108.37197 * 359.71925 * 15 9 8 17 17 C 1.46684 * 106.11582 * 179.97438 * 3 2 1 18 18 C 1.34487 * 106.33575 * 0.02562 * 17 3 2 19 19 C 1.50705 * 125.57030 * 179.97438 * 18 17 3 20 20 O 1.42896 * 109.47096 * 119.97771 * 19 18 17 21 21 Si 1.86300 * 109.46761 * 359.97438 * 19 18 17 22 22 H 1.48497 * 109.47434 * 59.99885 * 21 19 18 23 23 H 1.48503 * 109.47132 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47155 * 299.99765 * 21 19 18 25 25 N 1.34678 * 125.80348 * 179.69304 * 2 1 3 26 26 H 1.09002 * 109.47152 * 89.99795 * 1 2 3 27 27 H 1.09001 * 109.46980 * 329.99895 * 1 2 3 28 28 H 1.09004 * 109.47113 * 209.99876 * 1 2 3 29 29 H 0.97007 * 120.00159 * 0.02562 * 6 4 3 30 30 H 1.07997 * 126.22403 * 359.97416 * 8 7 6 31 31 H 1.08994 * 109.47551 * 210.00218 * 10 9 8 32 32 H 1.09005 * 109.46974 * 330.00350 * 10 9 8 33 33 H 1.08998 * 109.47528 * 59.99297 * 12 11 10 34 34 H 1.09001 * 109.47204 * 180.02562 * 12 11 10 35 35 H 1.09010 * 109.46769 * 299.99774 * 12 11 10 36 36 H 1.09005 * 109.47014 * 60.00410 * 13 11 10 37 37 H 1.08993 * 109.46841 * 179.97438 * 13 11 10 38 38 H 1.08994 * 109.47494 * 300.00288 * 13 11 10 39 39 H 1.09003 * 109.46426 * 60.00168 * 14 11 10 40 40 H 1.09002 * 109.47066 * 179.97438 * 14 11 10 41 41 H 1.08999 * 109.47264 * 300.00543 * 14 11 10 42 42 H 1.08001 * 125.83426 * 180.29780 * 16 15 9 43 43 H 1.08001 * 126.82789 * 179.97438 * 17 3 2 44 44 H 1.09007 * 109.47062 * 239.97848 * 19 18 17 45 45 H 0.96702 * 113.99865 * 180.02562 * 20 19 18 46 46 H 0.96998 * 124.84882 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1093 0.0000 4 6 1.8703 2.5156 0.0005 5 8 0.6837 2.7840 0.0015 6 7 2.7850 3.5054 0.0010 7 6 2.3675 4.8494 0.0020 8 6 3.1781 5.9384 0.0021 9 7 2.3840 7.0405 0.0027 10 6 2.8408 8.4325 0.0035 11 14 3.0344 9.0234 -1.7527 12 6 1.3955 8.9083 -2.6310 13 6 3.6160 10.7934 -1.7517 14 6 4.2861 7.9596 -2.6315 15 7 1.0510 6.6103 0.0024 16 6 1.0399 5.3020 -0.0044 17 6 3.6882 0.6151 0.0006 18 6 3.6096 -0.7274 0.0004 19 6 4.7821 -1.6743 0.0003 20 8 4.7297 -2.4974 1.1671 21 14 6.3687 -0.6978 -0.0002 22 1 6.4237 0.1581 1.2121 23 1 7.5241 -1.6307 -0.0009 24 1 6.4231 0.1576 -1.2129 25 7 2.2949 -1.0923 0.0059 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 0.8900 0.5139 28 1 -0.3633 -0.8900 0.5138 29 1 3.7312 3.2914 0.0006 30 1 4.2581 5.9301 0.0017 31 1 2.1085 9.0549 0.5176 32 1 3.7997 8.4999 0.5173 33 1 0.6632 9.5307 -2.1168 34 1 1.5089 9.2536 -3.6586 35 1 1.0556 7.8725 -2.6315 36 1 4.5751 10.8604 -1.2380 37 1 3.7298 11.1389 -2.7791 38 1 2.8841 11.4161 -1.2374 39 1 3.9462 6.9240 -2.6320 40 1 4.3991 8.3051 -3.6591 41 1 5.2450 8.0270 -2.1176 42 1 0.1590 4.6772 -0.0109 43 1 4.5890 1.2110 0.0004 44 1 4.7418 -2.3024 -0.8897 45 1 5.4560 -3.1325 1.2334 46 1 1.9736 -2.0074 0.0104 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608520_9865296.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:56:40 Heat of formation + Delta-G solvation = 14.283860 kcal Electronic energy + Delta-G solvation = -26455.916950 eV Core-core repulsion = 22699.633319 eV Total energy + Delta-G solvation = -3756.283631 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.54315 -42.12379 -39.99953 -37.67845 -35.82325 -33.69728 -32.98241 -32.22154 -30.31487 -29.51449 -29.01894 -28.36542 -28.32296 -27.04919 -25.46531 -23.75614 -22.43813 -21.83113 -21.28849 -20.25982 -18.50125 -18.40730 -18.22917 -16.95187 -16.69496 -16.56394 -16.22350 -15.88856 -15.34439 -15.17867 -14.98197 -14.91829 -14.60775 -14.17223 -14.14447 -14.04268 -13.97268 -13.92082 -13.81226 -13.68482 -13.43128 -13.38194 -13.19741 -13.12788 -13.01451 -12.91428 -12.48797 -12.10763 -11.95664 -11.88480 -11.73005 -11.31376 -10.86767 -10.83693 -10.79064 -10.44063 -10.00061 -9.94538 -9.20571 -8.51641 0.54377 0.90724 1.07364 1.23584 1.40744 1.54492 1.63988 1.69152 1.80607 1.89060 1.96091 2.04957 2.19594 2.51450 2.58816 2.62317 3.34335 3.77888 3.82434 3.89980 3.96449 4.06745 4.17629 4.32701 4.39720 4.49359 4.60858 4.69356 4.70825 4.72574 4.74154 4.75873 4.76998 4.83907 4.84703 4.88046 4.89471 4.98896 5.13010 5.27662 5.52557 5.61225 5.63222 5.66450 5.84026 5.88190 6.12733 6.45755 6.56695 6.76514 6.77657 7.30968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.116 3.884 3 C -0.255 4.255 4 C 0.588 3.412 5 O -0.568 6.568 6 N -0.630 5.630 7 C -0.019 4.019 8 C 0.026 3.974 9 N -0.341 5.341 10 C -0.190 4.190 11 Si 1.093 2.907 12 C -0.474 4.474 13 C -0.453 4.453 14 C -0.459 4.459 15 N -0.318 5.318 16 C 0.023 3.977 17 C -0.175 4.175 18 C 0.027 3.973 19 C -0.064 4.064 20 O -0.567 6.567 21 Si 0.999 3.001 22 H -0.267 1.267 23 H -0.252 1.252 24 H -0.251 1.251 25 N -0.527 5.527 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.422 0.578 30 H 0.217 0.783 31 H 0.102 0.898 32 H 0.131 0.869 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.045 0.955 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.186 0.814 43 H 0.163 0.837 44 H 0.099 0.901 45 H 0.402 0.598 46 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.848 -2.515 -1.571 9.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.004 4.004 3 C -0.265 4.265 4 C 0.379 3.621 5 O -0.449 6.449 6 N -0.275 5.275 7 C -0.124 4.124 8 C -0.123 4.123 9 N -0.123 5.123 10 C -0.353 4.353 11 Si 1.282 2.718 12 C -0.578 4.578 13 C -0.562 4.562 14 C -0.567 4.567 15 N -0.142 5.142 16 C -0.162 4.162 17 C -0.198 4.198 18 C -0.083 4.083 19 C -0.173 4.173 20 O -0.377 6.377 21 Si 0.820 3.180 22 H -0.191 1.191 23 H -0.176 1.176 24 H -0.175 1.175 25 N -0.123 5.123 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.105 0.895 29 H 0.259 0.741 30 H 0.234 0.766 31 H 0.121 0.879 32 H 0.149 0.851 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.202 0.798 43 H 0.180 0.820 44 H 0.117 0.883 45 H 0.254 0.746 46 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 7.563 -0.535 -1.400 7.710 hybrid contribution 0.252 -1.962 0.024 1.978 sum 7.815 -2.497 -1.376 8.319 Atomic orbital electron populations 1.20599 0.86029 1.04533 1.04046 1.20580 0.94384 0.85619 0.99865 1.19854 0.93856 0.91143 1.21675 1.17541 0.84808 0.84566 0.75154 1.90622 1.17902 1.84203 1.52184 1.42430 1.10513 1.01858 1.72664 1.17832 0.92964 0.84914 1.16658 1.22475 0.98907 0.84624 1.06276 1.48253 1.02939 1.06250 1.54904 1.27401 1.04844 0.79426 1.23644 0.78291 0.64821 0.66652 0.62046 1.26490 1.19570 1.03150 1.08583 1.26120 1.06893 1.17927 1.05258 1.26228 1.12505 1.09281 1.08640 1.77356 0.98798 1.12674 1.25364 1.24328 0.98438 0.91483 1.01938 1.21929 0.96052 0.93098 1.08768 1.19946 0.84504 0.93977 1.09824 1.24576 1.03521 0.97602 0.91634 1.86446 1.54779 1.53962 1.42495 0.84967 0.73337 0.79012 0.80654 1.19101 1.17622 1.17472 1.41546 1.05255 1.09061 1.56406 0.89658 0.89820 0.89492 0.74059 0.76604 0.87911 0.85133 0.91827 0.91205 0.93549 0.89643 0.90666 0.90883 0.92221 0.90930 0.89339 0.79755 0.82006 0.88311 0.74634 0.73036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.23 9.88 71.24 0.70 0.48 16 2 C 0.12 0.52 7.18 41.78 0.30 0.82 16 3 C -0.26 -1.71 6.29 -19.04 -0.12 -1.83 16 4 C 0.59 5.90 7.78 86.62 0.67 6.58 16 5 O -0.57 -8.86 11.96 -4.21 -0.05 -8.91 16 6 N -0.63 -3.29 5.47 -307.10 -1.68 -4.97 16 7 C -0.02 -0.15 6.90 37.63 0.26 0.11 16 8 C 0.03 0.05 11.44 83.50 0.96 1.00 16 9 N -0.34 -1.46 3.01 -182.91 -0.55 -2.01 16 10 C -0.19 0.64 5.59 127.77 0.71 1.36 16 11 Si 1.09 -6.14 12.79 68.60 0.88 -5.27 16 12 C -0.47 -1.16 8.65 113.37 0.98 -0.18 16 13 C -0.45 2.97 8.65 113.37 0.98 3.95 16 14 C -0.46 2.21 8.65 113.37 0.98 3.19 16 15 N -0.32 -3.96 12.56 -56.77 -0.71 -4.67 16 16 C 0.02 0.31 10.84 85.33 0.92 1.24 16 17 C -0.17 -0.38 9.03 23.62 0.21 -0.16 16 18 C 0.03 0.02 6.51 40.98 0.27 0.29 16 19 C -0.06 0.31 3.07 71.24 0.22 0.53 16 20 O -0.57 2.19 12.86 -148.98 -1.92 0.27 16 21 Si 1.00 -5.41 25.84 68.60 1.77 -3.64 16 22 H -0.27 0.44 7.11 99.48 0.71 1.15 16 23 H -0.25 1.44 7.11 99.48 0.71 2.15 16 24 H -0.25 1.16 7.11 99.48 0.71 1.87 16 25 N -0.53 -0.22 5.90 -171.05 -1.01 -1.23 16 26 H 0.08 0.11 8.14 -2.39 -0.02 0.09 16 27 H 0.08 0.61 6.46 -2.39 -0.02 0.59 16 28 H 0.09 -0.20 8.14 -2.38 -0.02 -0.22 16 29 H 0.42 -0.71 7.95 -92.70 -0.74 -1.44 16 30 H 0.22 -1.71 8.06 -2.91 -0.02 -1.74 16 31 H 0.10 -0.27 7.96 -2.39 -0.02 -0.28 16 32 H 0.13 -1.27 7.96 -2.38 -0.02 -1.29 16 33 H 0.06 0.21 7.96 -2.39 -0.02 0.19 16 34 H 0.07 0.10 7.96 -2.39 -0.02 0.08 16 35 H 0.05 0.36 7.96 -2.38 -0.02 0.34 16 36 H 0.08 -0.74 7.96 -2.38 -0.02 -0.76 16 37 H 0.07 -0.43 7.96 -2.39 -0.02 -0.45 16 38 H 0.07 -0.44 7.96 -2.39 -0.02 -0.45 16 39 H 0.06 -0.11 7.96 -2.39 -0.02 -0.13 16 40 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 41 H 0.09 -0.72 7.96 -2.39 -0.02 -0.74 16 42 H 0.19 3.06 5.91 -2.91 -0.02 3.04 16 43 H 0.16 -0.46 5.86 -2.91 -0.02 -0.48 16 44 H 0.10 -0.91 7.96 -2.38 -0.02 -0.93 16 45 H 0.40 -5.15 8.74 -74.06 -0.65 -5.79 16 46 H 0.43 -1.95 8.96 -92.71 -0.83 -2.78 16 Total: 0.00 -25.71 385.97 4.35 -21.36 By element: Atomic # 1 Polarization: -7.87 SS G_CDS: -0.43 Total: -8.31 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: 8.05 Total: 17.35 kcal Atomic # 7 Polarization: -8.92 SS G_CDS: -3.95 Total: -12.87 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -1.97 Total: -8.64 kcal Atomic # 14 Polarization: -11.55 SS G_CDS: 2.65 Total: -8.90 kcal Total: -25.71 4.35 -21.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_9865296.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.646 kcal (2) G-P(sol) polarization free energy of solvation -25.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds