Wall clock time and date at job start Sun Mar 7 2021 05:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86298 * 109.47073 * 2 1 4 4 H 1.48499 * 109.47282 * 60.00887 * 3 2 1 5 5 H 1.48509 * 109.47015 * 180.02562 * 3 2 1 6 6 H 1.48497 * 109.47212 * 300.00372 * 3 2 1 7 7 C 1.50707 * 109.46525 * 240.00585 * 2 1 3 8 8 C 1.36451 * 120.28875 * 239.99712 * 7 2 1 9 9 C 1.40095 * 119.25173 * 179.97438 * 8 7 2 10 10 C 1.40850 * 132.87159 * 179.97438 * 9 8 7 11 11 C 1.46568 * 126.57331 * 0.02562 * 10 9 8 12 12 O 1.21722 * 120.00255 * 54.70717 * 11 10 9 13 13 N 1.34776 * 119.99848 * 234.69546 * 11 10 9 14 14 C 1.45371 * 116.88481 * 5.26663 * 13 11 10 15 15 C 1.53042 * 105.95145 * 80.97089 * 14 13 11 16 16 C 1.54237 * 107.65450 * 102.32904 * 15 14 13 17 17 Si 1.86106 * 108.78549 * 321.45241 * 16 15 14 18 18 C 1.88268 * 110.20523 * 83.84749 * 17 16 15 19 19 C 1.56273 * 99.07040 * 96.01321 * 18 17 16 20 20 C 1.53721 * 109.69812 * 39.71657 * 19 18 17 21 21 C 1.55554 * 111.36483 * 311.86120 * 20 19 18 22 22 C 1.84507 * 113.09433 * 319.02035 * 17 16 15 23 23 C 1.42480 * 116.88273 * 185.51884 * 13 11 10 24 24 C 1.40547 * 106.84361 * 180.02562 * 10 9 8 25 25 N 1.30738 * 108.74445 * 359.97438 * 24 10 9 26 26 N 1.36580 * 120.22670 * 0.02562 * 9 8 7 27 27 C 1.36239 * 120.08704 * 0.02562 * 26 9 8 28 28 C 1.35194 * 120.70086 * 359.69065 * 27 26 9 29 29 H 0.96696 * 114.00592 * 59.99091 * 1 2 3 30 30 H 1.08996 * 109.47664 * 120.00590 * 2 1 3 31 31 H 1.07994 * 120.37865 * 0.02562 * 8 7 2 32 32 H 1.09001 * 110.10415 * 199.99805 * 14 13 11 33 33 H 1.09003 * 110.09514 * 321.64564 * 14 13 11 34 34 H 1.09001 * 109.86711 * 342.75502 * 15 14 13 35 35 H 1.09000 * 109.81703 * 221.86712 * 15 14 13 36 36 H 1.08996 * 109.58033 * 201.65872 * 16 15 14 37 37 H 1.09005 * 109.69655 * 81.31119 * 16 15 14 38 38 H 1.09002 * 111.47672 * 213.48075 * 18 17 16 39 39 H 1.08996 * 111.47324 * 338.54704 * 18 17 16 40 40 H 1.09006 * 109.43440 * 279.63976 * 19 18 17 41 41 H 1.08998 * 109.38913 * 159.76453 * 19 18 17 42 42 H 1.09001 * 109.11088 * 191.35986 * 20 19 18 43 43 H 1.09004 * 109.02641 * 72.31266 * 20 19 18 44 44 H 1.08995 * 111.12004 * 270.21694 * 21 20 19 45 45 H 1.08997 * 111.15109 * 146.08701 * 21 20 19 46 46 H 1.08999 * 109.71019 * 325.23676 * 22 17 16 47 47 H 1.09000 * 109.71065 * 204.60026 * 22 17 16 48 48 H 1.08997 * 109.82448 * 3.58271 * 23 13 11 49 49 H 1.08996 * 109.82332 * 124.44988 * 23 13 11 50 50 H 1.08002 * 125.62863 * 180.02562 * 24 10 9 51 51 H 1.07996 * 119.64955 * 180.02562 * 27 26 9 52 52 H 1.08003 * 119.83957 * 180.30240 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 1 1.5552 2.4564 1.2126 5 1 3.5351 1.7564 -0.0006 6 1 1.5549 2.4565 -1.2124 7 6 1.9312 -0.7103 -1.2306 8 6 2.7161 -1.8203 -1.1125 9 6 3.1704 -2.4639 -2.2709 10 6 3.9746 -3.6007 -2.4828 11 6 4.5758 -4.4499 -1.4505 12 8 3.8754 -4.9492 -0.5892 13 7 5.9041 -4.6781 -1.4550 14 6 6.6917 -3.9562 -2.4408 15 6 6.9177 -2.5594 -1.8577 16 6 8.3571 -2.5101 -1.3060 17 14 8.7501 -4.1456 -0.5097 18 6 9.3231 -5.3809 -1.8098 19 6 10.8679 -5.2035 -1.6544 20 6 11.2250 -5.0525 -0.1669 21 6 10.3073 -4.0096 0.5332 22 6 7.3462 -4.8273 0.4746 23 6 6.4013 -5.6079 -0.4968 24 6 4.0899 -3.7644 -3.8739 25 7 3.4162 -2.8133 -4.4661 26 7 2.8302 -1.9829 -3.5031 27 6 2.0470 -0.8734 -3.6108 28 6 1.5925 -0.2395 -2.5065 29 1 -0.3934 0.4418 -0.7649 30 1 1.7924 -0.5139 0.8899 31 1 2.9833 -2.1989 -0.1370 32 1 7.6476 -4.4566 -2.5959 33 1 6.1452 -3.8905 -3.3816 34 1 6.2065 -2.3746 -1.0526 35 1 6.7951 -1.8088 -2.6385 36 1 8.4374 -1.7144 -0.5654 37 1 9.0567 -2.3229 -2.1208 38 1 9.0108 -6.3953 -1.5615 39 1 8.9869 -5.0957 -2.8066 40 1 11.1870 -4.3132 -2.1963 41 1 11.3754 -6.0776 -2.0623 42 1 12.2626 -4.7300 -0.0799 43 1 11.1092 -6.0177 0.3262 44 1 10.7338 -3.0084 0.4733 45 1 10.1123 -4.2896 1.5684 46 1 6.7971 -4.0118 0.9452 47 1 7.7277 -5.5040 1.2392 48 1 5.5722 -6.0412 0.0626 49 1 6.9585 -6.3968 -1.0019 50 1 4.6431 -4.5472 -4.3716 51 1 1.7820 -0.4994 -4.5886 52 1 0.9684 0.6361 -2.6081 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608542_11618758.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:44:41 Heat of formation + Delta-G solvation = 26.772199 kcal Electronic energy + Delta-G solvation = -33248.686564 eV Core-core repulsion = 29146.380479 eV Total energy + Delta-G solvation = -4102.306085 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 373.173 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.36320 -41.26359 -39.32323 -37.74442 -37.20013 -36.18692 -34.44270 -33.89312 -32.12810 -31.72501 -29.92721 -29.77754 -27.28053 -26.96937 -25.24388 -25.06190 -24.41112 -23.17019 -22.73149 -22.35634 -21.01340 -20.19256 -19.00064 -18.52778 -18.07020 -17.58793 -17.46965 -16.83088 -16.55848 -16.33816 -15.85421 -15.80331 -15.72086 -15.52849 -15.25528 -15.10284 -14.95883 -14.73875 -14.46845 -14.33256 -14.14920 -13.99917 -13.58548 -13.49119 -13.23494 -13.17907 -12.87384 -12.82474 -12.58508 -12.41022 -12.28153 -12.18504 -12.11016 -11.95686 -11.92928 -11.84713 -11.64366 -11.54520 -11.32636 -10.93800 -10.73991 -10.50503 -10.29437 -10.25512 -10.20481 -9.61660 -8.72744 -0.51439 -0.11113 1.06671 1.08691 1.11881 1.45273 1.56757 1.69528 1.73295 1.89173 1.91627 1.93611 2.13751 2.31457 2.60990 3.07451 3.24303 3.44315 3.61431 3.72075 3.77504 3.87184 3.92513 4.04689 4.14004 4.14842 4.18397 4.23933 4.30722 4.37403 4.38055 4.43825 4.45870 4.55742 4.59429 4.69275 4.70538 4.71509 4.74069 4.78560 4.95764 5.06063 5.10094 5.10768 5.15281 5.15444 5.22534 5.23515 5.27454 5.33778 5.40233 5.43610 5.53343 5.58114 5.68390 5.77216 6.26054 6.33322 6.68700 7.17137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.084 4.084 3 Si 0.989 3.011 4 H -0.266 1.266 5 H -0.270 1.270 6 H -0.222 1.222 7 C -0.057 4.057 8 C -0.128 4.128 9 C 0.144 3.856 10 C -0.327 4.327 11 C 0.591 3.409 12 O -0.583 6.583 13 N -0.587 5.587 14 C 0.066 3.934 15 C -0.120 4.120 16 C -0.414 4.414 17 Si 1.039 2.961 18 C -0.413 4.413 19 C -0.123 4.123 20 C -0.123 4.123 21 C -0.420 4.420 22 C -0.436 4.436 23 C 0.112 3.888 24 C 0.122 3.878 25 N -0.332 5.332 26 N -0.274 5.274 27 C 0.117 3.883 28 C -0.160 4.160 29 H 0.393 0.607 30 H 0.119 0.881 31 H 0.142 0.858 32 H 0.129 0.871 33 H 0.098 0.902 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.092 0.908 48 H 0.077 0.923 49 H 0.095 0.905 50 H 0.226 0.774 51 H 0.206 0.794 52 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.300 5.150 -3.567 6.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.192 4.192 3 Si 0.809 3.191 4 H -0.190 1.190 5 H -0.195 1.195 6 H -0.144 1.144 7 C -0.063 4.063 8 C -0.147 4.147 9 C 0.023 3.977 10 C -0.342 4.342 11 C 0.380 3.620 12 O -0.464 6.464 13 N -0.318 5.318 14 C -0.055 4.055 15 C -0.158 4.158 16 C -0.500 4.500 17 Si 1.230 2.770 18 C -0.499 4.499 19 C -0.161 4.161 20 C -0.161 4.161 21 C -0.505 4.505 22 C -0.522 4.522 23 C -0.011 4.011 24 C -0.058 4.058 25 N -0.153 5.153 26 N -0.039 5.039 27 C -0.009 4.009 28 C -0.181 4.181 29 H 0.244 0.756 30 H 0.137 0.863 31 H 0.160 0.840 32 H 0.146 0.854 33 H 0.117 0.883 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.104 0.896 39 H 0.114 0.886 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.083 0.917 47 H 0.111 0.889 48 H 0.095 0.905 49 H 0.113 0.887 50 H 0.242 0.758 51 H 0.223 0.777 52 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 2.039 5.826 -3.792 7.244 hybrid contribution 0.203 -0.861 0.712 1.136 sum 2.242 4.965 -3.080 6.258 Atomic orbital electron populations 1.86596 1.16450 1.82070 1.50283 1.25193 0.85453 1.11541 0.97034 0.85164 0.79140 0.72683 0.82123 1.18987 1.19478 1.14364 1.20678 0.94587 0.93926 0.97120 1.20506 1.01155 0.96142 0.96944 1.19371 0.96241 0.95018 0.87030 1.19574 1.15865 1.04241 0.94471 1.17478 0.82745 0.78906 0.82876 1.90775 1.62772 1.52630 1.40204 1.46806 1.06294 1.43772 1.34914 1.22598 0.98680 0.92244 0.91972 1.21918 0.96805 0.96823 1.00272 1.26521 0.99058 1.17118 1.07265 0.79167 0.64447 0.66832 0.66603 1.27188 1.00302 1.11212 1.11187 1.22007 0.96008 1.02273 0.95776 1.21863 0.99709 0.99019 0.95470 1.26683 1.15680 1.01187 1.06982 1.27162 1.12131 1.05689 1.07173 1.21185 0.98411 0.91406 0.90109 1.24357 0.94450 0.96078 0.90893 1.77549 1.19472 1.06968 1.11334 1.46230 1.32853 1.19623 1.05159 1.22251 0.90831 0.84189 1.03588 1.21204 1.03967 1.03697 0.89197 0.75630 0.86261 0.84049 0.85394 0.88346 0.92851 0.91527 0.90879 0.89110 0.89570 0.88558 0.91268 0.91683 0.92460 0.92072 0.90628 0.90700 0.91678 0.88900 0.90455 0.88682 0.75779 0.77692 0.78200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.51 12.87 -148.98 -1.92 -0.41 16 2 C -0.08 0.30 2.84 71.24 0.20 0.50 16 3 Si 0.99 -5.15 27.27 68.60 1.87 -3.28 16 4 H -0.27 0.36 7.11 99.48 0.71 1.07 16 5 H -0.27 0.42 7.11 99.48 0.71 1.13 16 6 H -0.22 1.99 7.05 99.48 0.70 2.69 16 7 C -0.06 0.09 4.53 -19.81 -0.09 0.00 16 8 C -0.13 -0.56 9.70 22.30 0.22 -0.35 16 9 C 0.14 0.96 6.79 39.49 0.27 1.23 16 10 C -0.33 -2.24 4.68 -19.90 -0.09 -2.34 16 11 C 0.59 5.39 6.83 86.42 0.59 5.99 16 12 O -0.58 -10.25 16.12 -4.42 -0.07 -10.32 16 13 N -0.59 -1.37 2.21 -832.12 -1.84 -3.21 16 14 C 0.07 -0.18 5.24 86.61 0.45 0.27 16 15 C -0.12 0.13 5.53 31.03 0.17 0.30 16 16 C -0.41 1.45 5.09 72.40 0.37 1.81 16 17 Si 1.04 -4.79 8.82 68.60 0.60 -4.19 16 18 C -0.41 2.25 5.11 73.12 0.37 2.62 16 19 C -0.12 0.41 5.96 31.98 0.19 0.60 16 20 C -0.12 0.18 6.09 31.72 0.19 0.38 16 21 C -0.42 0.81 5.84 72.86 0.43 1.24 16 22 C -0.44 0.21 5.07 73.16 0.37 0.58 16 23 C 0.11 0.20 6.01 88.30 0.53 0.74 16 24 C 0.12 0.36 9.82 85.42 0.84 1.20 16 25 N -0.33 -1.77 12.57 -56.62 -0.71 -2.48 16 26 N -0.27 -1.09 3.86 -187.28 -0.72 -1.81 16 27 C 0.12 -0.41 11.18 83.31 0.93 0.52 16 28 C -0.16 1.03 8.38 22.03 0.18 1.22 16 29 H 0.39 -4.66 8.07 -74.06 -0.60 -5.26 16 30 H 0.12 -0.37 7.71 -2.39 -0.02 -0.38 16 31 H 0.14 0.79 7.95 -2.91 -0.02 0.76 16 32 H 0.13 -0.90 2.80 -2.39 -0.01 -0.90 16 33 H 0.10 -0.43 4.55 -2.39 -0.01 -0.44 16 34 H 0.05 0.15 7.42 -2.39 -0.02 0.14 16 35 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 36 H 0.07 -0.19 7.97 -2.39 -0.02 -0.21 16 37 H 0.09 -0.49 7.97 -2.38 -0.02 -0.51 16 38 H 0.09 -0.49 7.23 -2.39 -0.02 -0.51 16 39 H 0.10 -0.75 6.11 -2.39 -0.01 -0.77 16 40 H 0.07 -0.30 8.14 -2.38 -0.02 -0.32 16 41 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 42 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 43 H 0.06 -0.09 8.14 -2.38 -0.02 -0.11 16 44 H 0.07 -0.14 8.03 -2.39 -0.02 -0.15 16 45 H 0.07 -0.11 8.03 -2.39 -0.02 -0.13 16 46 H 0.06 0.17 7.96 -2.39 -0.02 0.15 16 47 H 0.09 -0.17 7.96 -2.39 -0.02 -0.19 16 48 H 0.08 0.58 6.56 -2.39 -0.02 0.57 16 49 H 0.10 -0.29 6.83 -2.39 -0.02 -0.30 16 50 H 0.23 -1.01 7.49 -2.91 -0.02 -1.03 16 51 H 0.21 -2.09 8.06 -2.91 -0.02 -2.11 16 52 H 0.20 -3.06 7.26 -2.91 -0.02 -3.08 16 Total: 0.00 -23.85 396.31 4.44 -19.41 By element: Atomic # 1 Polarization: -11.32 SS G_CDS: 1.10 Total: -10.22 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: 6.13 Total: 16.50 kcal Atomic # 7 Polarization: -4.23 SS G_CDS: -3.27 Total: -7.50 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -1.99 Total: -10.72 kcal Atomic # 14 Polarization: -9.94 SS G_CDS: 2.48 Total: -7.47 kcal Total: -23.85 4.44 -19.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608542_11618758.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.179 kcal (2) G-P(sol) polarization free energy of solvation -23.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds