Wall clock time and date at job start Sun Mar 7 2021 05:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86303 * 109.47098 * 2 1 4 4 H 1.48489 * 109.47124 * 59.99903 * 3 2 1 5 5 H 1.48504 * 109.46984 * 179.97438 * 3 2 1 6 6 H 1.48498 * 109.46958 * 299.99326 * 3 2 1 7 7 C 1.50704 * 109.47038 * 119.99707 * 2 1 3 8 8 C 1.38230 * 119.99899 * 64.99822 * 7 2 1 9 9 C 1.38233 * 120.00002 * 180.02562 * 8 7 2 10 10 C 1.38232 * 120.00084 * 0.02562 * 9 8 7 11 11 C 1.50703 * 120.00059 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47388 * 89.99928 * 11 10 9 13 13 O 1.21280 * 119.99650 * 0.02562 * 12 11 10 14 14 N 1.34770 * 119.99782 * 179.97438 * 12 11 10 15 15 C 1.43941 * 122.80336 * 359.97438 * 14 12 11 16 16 C 1.55529 * 110.02548 * 291.04518 * 15 14 12 17 17 C 1.56824 * 111.26487 * 322.53925 * 16 15 14 18 18 Si 1.83053 * 113.78384 * 319.74016 * 17 16 15 19 19 C 1.87596 * 112.73121 * 207.97448 * 18 17 16 20 20 C 1.56447 * 98.94831 * 100.61526 * 19 18 17 21 21 C 1.53800 * 109.81155 * 39.21124 * 20 19 18 22 22 C 1.55756 * 111.41056 * 312.33907 * 21 20 19 23 23 C 1.88536 * 109.74025 * 84.93182 * 18 17 16 24 24 C 1.46436 * 104.61955 * 294.19624 * 23 18 17 25 25 C 1.38230 * 119.99928 * 0.25511 * 10 9 8 26 26 C 1.38235 * 119.99984 * 359.47013 * 25 10 9 27 27 H 0.96703 * 114.00144 * 60.00048 * 1 2 3 28 28 H 1.08997 * 109.47390 * 239.99651 * 2 1 3 29 29 H 1.08006 * 120.00118 * 359.97438 * 8 7 2 30 30 H 1.08001 * 120.00063 * 179.97438 * 9 8 7 31 31 H 1.09004 * 109.46886 * 329.99273 * 11 10 9 32 32 H 1.09005 * 109.47114 * 210.00414 * 11 10 9 33 33 H 1.09004 * 109.37763 * 51.21480 * 15 14 12 34 34 H 1.08997 * 109.38042 * 170.98826 * 15 14 12 35 35 H 1.08998 * 109.11886 * 82.99078 * 16 15 14 36 36 H 1.08994 * 109.12601 * 202.13330 * 16 15 14 37 37 H 1.08992 * 108.62269 * 80.85554 * 17 16 15 38 38 H 1.08997 * 108.61932 * 198.77445 * 17 16 15 39 39 H 1.09002 * 111.50219 * 218.05121 * 19 18 17 40 40 H 1.09004 * 111.49629 * 343.18021 * 19 18 17 41 41 H 1.09004 * 109.41458 * 279.10898 * 20 19 18 42 42 H 1.09000 * 109.36656 * 159.28218 * 20 19 18 43 43 H 1.08989 * 109.10438 * 191.82541 * 21 20 19 44 44 H 1.09001 * 109.01123 * 72.78571 * 21 20 19 45 45 H 1.09000 * 111.14803 * 270.04958 * 22 21 20 46 46 H 1.08995 * 111.19227 * 145.83447 * 22 21 20 47 47 H 1.09000 * 110.39868 * 175.42556 * 23 18 17 48 48 H 1.09001 * 110.40005 * 52.97237 * 23 18 17 49 49 H 1.09005 * 108.75285 * 178.72119 * 24 23 18 50 50 H 1.08997 * 108.75727 * 296.96597 * 24 23 18 51 51 H 1.08004 * 120.00327 * 179.72229 * 25 10 9 52 52 H 1.08001 * 120.00222 * 180.27379 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 1 1.5550 2.4565 1.2124 5 1 3.5350 1.7565 0.0006 6 1 1.5551 2.4564 -1.2126 7 6 1.9313 -0.7104 1.2305 8 6 1.6847 -2.0601 1.3985 9 6 2.1450 -2.7116 2.5274 10 6 2.8514 -2.0132 3.4887 11 6 3.3528 -2.7234 4.7198 12 6 4.7345 -3.2656 4.4593 13 8 5.2606 -3.0920 3.3805 14 7 5.3859 -3.9424 5.4257 15 6 4.8197 -4.1818 6.7273 16 6 4.7189 -2.8463 7.5179 17 6 5.9548 -1.9232 7.2353 18 14 7.5449 -2.8255 7.1457 19 6 9.0100 -1.7634 7.6403 20 6 9.2066 -2.2854 9.1019 21 6 8.9793 -3.8058 9.1474 22 6 7.6718 -4.2078 8.4025 23 6 7.7959 -3.5022 5.4039 24 6 6.7356 -4.4986 5.2382 25 6 3.0931 -0.6623 3.3235 26 6 2.6377 -0.0120 2.1919 27 1 -0.3933 0.4417 -0.7651 28 1 1.7924 -0.5139 -0.8899 29 1 1.1316 -2.6055 0.6481 30 1 1.9519 -3.7660 2.6589 31 1 2.6799 -3.5454 4.9643 32 1 3.3886 -2.0228 5.5541 33 1 3.8244 -4.6118 6.6152 34 1 5.4547 -4.8776 7.2755 35 1 3.8087 -2.3244 7.2226 36 1 4.6745 -3.0653 8.5847 37 1 5.7941 -1.4064 6.2893 38 1 6.0230 -1.1800 8.0297 39 1 9.8822 -1.9723 7.0208 40 1 8.7577 -0.7030 7.6254 41 1 8.4928 -1.7924 9.7619 42 1 10.2207 -2.0607 9.4327 43 1 8.9100 -4.1252 10.1872 44 1 9.8259 -4.3057 8.6767 45 1 6.8170 -4.2041 9.0788 46 1 7.7788 -5.1758 7.9132 47 1 8.7756 -3.9718 5.3163 48 1 7.6874 -2.7058 4.6677 49 1 6.8047 -4.9203 4.2354 50 1 6.8880 -5.2967 5.9647 51 1 3.6412 -0.1156 4.0767 52 1 2.8303 1.0426 2.0607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608542_12335836.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:49:41 Heat of formation + Delta-G solvation = -79.002409 kcal Electronic energy + Delta-G solvation = -29228.143703 eV Core-core repulsion = 25508.554989 eV Total energy + Delta-G solvation = -3719.588714 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.183 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.40942 -40.20157 -37.84514 -37.40626 -36.27853 -34.58933 -33.54735 -31.83642 -31.70637 -29.91826 -29.59015 -27.37086 -25.79164 -25.04410 -23.75866 -23.69659 -22.75640 -21.66194 -21.12445 -19.80775 -18.44443 -18.00643 -17.67021 -17.02394 -16.94128 -16.47446 -16.14372 -16.01303 -15.79708 -15.59220 -15.38462 -15.03941 -14.85507 -14.70222 -14.50261 -14.30381 -14.24970 -14.17911 -13.97363 -13.46676 -13.37804 -13.02750 -12.87701 -12.81208 -12.73162 -12.58272 -12.39680 -12.21723 -12.17464 -12.11237 -12.02422 -11.78005 -11.76082 -11.59758 -11.46173 -10.75169 -10.61778 -10.47430 -10.29682 -10.18010 -9.73880 -9.67710 -9.47803 0.35712 0.58967 1.19058 1.47717 1.54501 1.56898 1.66584 1.70158 1.88966 1.94656 2.03771 2.51619 2.81824 3.47658 3.62809 3.71992 3.78291 3.85756 3.90365 3.99315 4.01010 4.02906 4.08797 4.13446 4.19420 4.25254 4.30411 4.43213 4.45104 4.48883 4.52637 4.54206 4.58130 4.59066 4.64509 4.68445 4.80136 4.88980 4.94585 4.97214 5.00013 5.03136 5.09595 5.11102 5.18401 5.22476 5.25222 5.37949 5.41834 5.44130 5.49190 5.55308 5.67072 5.69946 6.10940 6.49619 6.61587 7.26837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.082 4.082 3 Si 0.946 3.054 4 H -0.248 1.248 5 H -0.249 1.249 6 H -0.258 1.258 7 C -0.075 4.075 8 C -0.087 4.087 9 C -0.104 4.104 10 C -0.063 4.063 11 C -0.107 4.107 12 C 0.527 3.473 13 O -0.522 6.522 14 N -0.609 5.609 15 C 0.086 3.914 16 C -0.127 4.127 17 C -0.410 4.410 18 Si 0.990 3.010 19 C -0.408 4.408 20 C -0.122 4.122 21 C -0.118 4.118 22 C -0.404 4.404 23 C -0.421 4.421 24 C 0.119 3.881 25 C -0.100 4.100 26 C -0.121 4.121 27 H 0.379 0.621 28 H 0.076 0.924 29 H 0.126 0.874 30 H 0.123 0.877 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.092 0.908 48 H 0.084 0.916 49 H 0.072 0.928 50 H 0.078 0.922 51 H 0.123 0.877 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.592 -1.218 3.344 3.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.192 4.192 3 Si 0.769 3.231 4 H -0.172 1.172 5 H -0.173 1.173 6 H -0.182 1.182 7 C -0.075 4.075 8 C -0.105 4.105 9 C -0.122 4.122 10 C -0.064 4.064 11 C -0.146 4.146 12 C 0.316 3.684 13 O -0.397 6.397 14 N -0.343 5.343 15 C -0.038 4.038 16 C -0.165 4.165 17 C -0.496 4.496 18 Si 1.184 2.816 19 C -0.495 4.495 20 C -0.159 4.159 21 C -0.155 4.155 22 C -0.491 4.491 23 C -0.508 4.508 24 C -0.002 4.002 25 C -0.118 4.118 26 C -0.139 4.139 27 H 0.226 0.774 28 H 0.094 0.906 29 H 0.144 0.856 30 H 0.141 0.859 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.110 0.890 48 H 0.103 0.897 49 H 0.091 0.909 50 H 0.097 0.903 51 H 0.141 0.859 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.024 -0.571 3.267 3.317 hybrid contribution -0.126 -0.103 -0.284 0.327 sum -0.101 -0.675 2.983 3.060 Atomic orbital electron populations 1.86508 1.17296 1.81704 1.49524 1.24735 0.85566 1.10558 0.98349 0.85752 0.80773 0.75525 0.81060 1.17160 1.17285 1.18195 1.19226 0.98840 0.94355 0.95072 1.20924 0.98367 0.93704 0.97510 1.20996 0.97876 0.99595 0.93743 1.19286 0.97984 0.93696 0.95385 1.20865 0.94269 1.01654 0.97824 1.20333 0.87163 0.77516 0.83428 1.90749 1.68489 1.56519 1.23941 1.47532 1.17309 1.56149 1.13321 1.21934 1.00482 0.97779 0.83605 1.22731 0.98053 0.95246 1.00514 1.26425 1.11902 1.06755 1.04524 0.79809 0.66945 0.67758 0.67083 1.26660 1.14385 1.07608 1.00807 1.22044 1.02142 0.95244 0.96497 1.21839 0.97288 0.95495 1.00913 1.26594 1.00139 1.11325 1.11030 1.25441 1.01045 1.05641 1.18628 1.19889 0.81192 0.95756 1.03400 1.20841 0.99348 0.94008 0.97559 1.20913 0.99390 0.99337 0.94222 0.77352 0.90626 0.85601 0.85947 0.87813 0.87362 0.90582 0.88798 0.91418 0.90539 0.90942 0.90554 0.90126 0.90533 0.91916 0.91666 0.91855 0.91954 0.90251 0.90251 0.88973 0.89717 0.90919 0.90336 0.85911 0.86286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.63 12.81 -35.23 -0.45 -1.08 16 2 C -0.08 -0.08 2.79 36.01 0.10 0.02 16 3 Si 0.95 0.58 25.14 -169.99 -4.27 -3.70 16 4 H -0.25 -0.43 7.04 56.52 0.40 -0.04 16 5 H -0.25 -0.38 7.11 56.52 0.40 0.02 16 6 H -0.26 -0.12 7.11 56.52 0.40 0.28 16 7 C -0.07 -0.23 5.38 -104.62 -0.56 -0.80 16 8 C -0.09 -0.26 9.69 -39.59 -0.38 -0.64 16 9 C -0.10 -0.26 9.70 -39.59 -0.38 -0.64 16 10 C -0.06 -0.14 4.37 -104.63 -0.46 -0.60 16 11 C -0.11 0.02 4.56 -29.03 -0.13 -0.11 16 12 C 0.53 1.02 7.16 -10.99 -0.08 0.94 16 13 O -0.52 -3.25 16.04 5.56 0.09 -3.16 16 14 N -0.61 0.35 1.83 -177.25 -0.32 0.02 16 15 C 0.09 -0.28 5.00 -4.06 -0.02 -0.30 16 16 C -0.13 0.41 5.53 -23.32 -0.13 0.28 16 17 C -0.41 0.82 4.38 39.22 0.17 1.00 16 18 Si 0.99 -2.32 9.04 -169.99 -1.54 -3.86 16 19 C -0.41 0.35 5.94 39.01 0.23 0.58 16 20 C -0.12 0.10 5.97 -24.46 -0.15 -0.05 16 21 C -0.12 0.15 6.10 -24.85 -0.15 0.00 16 22 C -0.40 1.01 4.75 38.63 0.18 1.19 16 23 C -0.42 0.26 5.19 34.03 0.18 0.43 16 24 C 0.12 -0.06 4.84 -6.80 -0.03 -0.10 16 25 C -0.10 -0.25 9.70 -39.59 -0.38 -0.64 16 26 C -0.12 -0.36 8.67 -39.58 -0.34 -0.71 16 27 H 0.38 -1.27 8.74 45.56 0.40 -0.87 16 28 H 0.08 -0.04 7.96 -51.93 -0.41 -0.45 16 29 H 0.13 0.21 8.06 -52.48 -0.42 -0.21 16 30 H 0.12 0.08 8.06 -52.49 -0.42 -0.34 16 31 H 0.10 -0.24 7.75 -51.93 -0.40 -0.64 16 32 H 0.11 -0.21 5.66 -51.93 -0.29 -0.50 16 33 H 0.08 -0.33 7.65 -51.93 -0.40 -0.73 16 34 H 0.09 -0.42 5.64 -51.93 -0.29 -0.72 16 35 H 0.07 -0.23 5.98 -51.93 -0.31 -0.54 16 36 H 0.08 -0.32 8.14 -51.93 -0.42 -0.74 16 37 H 0.07 -0.05 7.56 -51.93 -0.39 -0.44 16 38 H 0.08 -0.17 7.89 -51.93 -0.41 -0.58 16 39 H 0.08 -0.05 8.04 -51.93 -0.42 -0.47 16 40 H 0.08 -0.05 8.04 -51.93 -0.42 -0.47 16 41 H 0.06 -0.07 8.14 -51.93 -0.42 -0.50 16 42 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 43 H 0.06 -0.07 8.14 -51.94 -0.42 -0.50 16 44 H 0.06 -0.07 8.14 -51.93 -0.42 -0.50 16 45 H 0.08 -0.24 8.01 -51.93 -0.42 -0.66 16 46 H 0.08 -0.24 7.20 -51.93 -0.37 -0.61 16 47 H 0.09 -0.13 8.02 -51.93 -0.42 -0.54 16 48 H 0.08 0.14 8.02 -51.93 -0.42 -0.28 16 49 H 0.07 0.10 7.89 -51.93 -0.41 -0.31 16 50 H 0.08 -0.23 6.00 -51.93 -0.31 -0.54 16 51 H 0.12 0.09 8.06 -52.48 -0.42 -0.34 16 52 H 0.12 0.20 4.87 -52.49 -0.26 -0.06 16 LS Contribution 391.65 15.07 5.90 5.90 Total: 0.00 -7.64 391.65 -11.07 -18.71 By element: Atomic # 1 Polarization: -4.57 SS G_CDS: -8.13 Total: -12.70 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -2.34 Total: -0.14 kcal Atomic # 7 Polarization: 0.35 SS G_CDS: -0.32 Total: 0.02 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: -0.36 Total: -4.24 kcal Atomic # 14 Polarization: -1.74 SS G_CDS: -5.81 Total: -7.55 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -7.64 -11.07 -18.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608542_12335836.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.293 kcal (2) G-P(sol) polarization free energy of solvation -7.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds