Wall clock time and date at job start Sun Mar 7 2021 05:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86303 * 109.47098 * 2 1 4 4 H 1.48489 * 109.47124 * 59.99903 * 3 2 1 5 5 H 1.48504 * 109.46984 * 179.97438 * 3 2 1 6 6 H 1.48498 * 109.46958 * 299.99326 * 3 2 1 7 7 C 1.50704 * 109.47038 * 119.99707 * 2 1 3 8 8 C 1.38230 * 119.99899 * 64.99822 * 7 2 1 9 9 C 1.38233 * 120.00002 * 180.02562 * 8 7 2 10 10 C 1.38232 * 120.00084 * 0.02562 * 9 8 7 11 11 C 1.50703 * 120.00059 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47388 * 89.99928 * 11 10 9 13 13 O 1.21280 * 119.99650 * 0.02562 * 12 11 10 14 14 N 1.34770 * 119.99782 * 179.97438 * 12 11 10 15 15 C 1.43941 * 122.80336 * 359.97438 * 14 12 11 16 16 C 1.55529 * 110.02548 * 291.04518 * 15 14 12 17 17 C 1.56824 * 111.26487 * 322.53925 * 16 15 14 18 18 Si 1.83053 * 113.78384 * 319.74016 * 17 16 15 19 19 C 1.87596 * 112.73121 * 207.97448 * 18 17 16 20 20 C 1.56447 * 98.94831 * 100.61526 * 19 18 17 21 21 C 1.53800 * 109.81155 * 39.21124 * 20 19 18 22 22 C 1.55756 * 111.41056 * 312.33907 * 21 20 19 23 23 C 1.88536 * 109.74025 * 84.93182 * 18 17 16 24 24 C 1.46436 * 104.61955 * 294.19624 * 23 18 17 25 25 C 1.38230 * 119.99928 * 0.25511 * 10 9 8 26 26 C 1.38235 * 119.99984 * 359.47013 * 25 10 9 27 27 H 0.96703 * 114.00144 * 60.00048 * 1 2 3 28 28 H 1.08997 * 109.47390 * 239.99651 * 2 1 3 29 29 H 1.08006 * 120.00118 * 359.97438 * 8 7 2 30 30 H 1.08001 * 120.00063 * 179.97438 * 9 8 7 31 31 H 1.09004 * 109.46886 * 329.99273 * 11 10 9 32 32 H 1.09005 * 109.47114 * 210.00414 * 11 10 9 33 33 H 1.09004 * 109.37763 * 51.21480 * 15 14 12 34 34 H 1.08997 * 109.38042 * 170.98826 * 15 14 12 35 35 H 1.08998 * 109.11886 * 82.99078 * 16 15 14 36 36 H 1.08994 * 109.12601 * 202.13330 * 16 15 14 37 37 H 1.08992 * 108.62269 * 80.85554 * 17 16 15 38 38 H 1.08997 * 108.61932 * 198.77445 * 17 16 15 39 39 H 1.09002 * 111.50219 * 218.05121 * 19 18 17 40 40 H 1.09004 * 111.49629 * 343.18021 * 19 18 17 41 41 H 1.09004 * 109.41458 * 279.10898 * 20 19 18 42 42 H 1.09000 * 109.36656 * 159.28218 * 20 19 18 43 43 H 1.08989 * 109.10438 * 191.82541 * 21 20 19 44 44 H 1.09001 * 109.01123 * 72.78571 * 21 20 19 45 45 H 1.09000 * 111.14803 * 270.04958 * 22 21 20 46 46 H 1.08995 * 111.19227 * 145.83447 * 22 21 20 47 47 H 1.09000 * 110.39868 * 175.42556 * 23 18 17 48 48 H 1.09001 * 110.40005 * 52.97237 * 23 18 17 49 49 H 1.09005 * 108.75285 * 178.72119 * 24 23 18 50 50 H 1.08997 * 108.75727 * 296.96597 * 24 23 18 51 51 H 1.08004 * 120.00327 * 179.72229 * 25 10 9 52 52 H 1.08001 * 120.00222 * 180.27379 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 1 1.5550 2.4565 1.2124 5 1 3.5350 1.7565 0.0006 6 1 1.5551 2.4564 -1.2126 7 6 1.9313 -0.7104 1.2305 8 6 1.6847 -2.0601 1.3985 9 6 2.1450 -2.7116 2.5274 10 6 2.8514 -2.0132 3.4887 11 6 3.3528 -2.7234 4.7198 12 6 4.7345 -3.2656 4.4593 13 8 5.2606 -3.0920 3.3805 14 7 5.3859 -3.9424 5.4257 15 6 4.8197 -4.1818 6.7273 16 6 4.7189 -2.8463 7.5179 17 6 5.9548 -1.9232 7.2353 18 14 7.5449 -2.8255 7.1457 19 6 9.0100 -1.7634 7.6403 20 6 9.2066 -2.2854 9.1019 21 6 8.9793 -3.8058 9.1474 22 6 7.6718 -4.2078 8.4025 23 6 7.7959 -3.5022 5.4039 24 6 6.7356 -4.4986 5.2382 25 6 3.0931 -0.6623 3.3235 26 6 2.6377 -0.0120 2.1919 27 1 -0.3933 0.4417 -0.7651 28 1 1.7924 -0.5139 -0.8899 29 1 1.1316 -2.6055 0.6481 30 1 1.9519 -3.7660 2.6589 31 1 2.6799 -3.5454 4.9643 32 1 3.3886 -2.0228 5.5541 33 1 3.8244 -4.6118 6.6152 34 1 5.4547 -4.8776 7.2755 35 1 3.8087 -2.3244 7.2226 36 1 4.6745 -3.0653 8.5847 37 1 5.7941 -1.4064 6.2893 38 1 6.0230 -1.1800 8.0297 39 1 9.8822 -1.9723 7.0208 40 1 8.7577 -0.7030 7.6254 41 1 8.4928 -1.7924 9.7619 42 1 10.2207 -2.0607 9.4327 43 1 8.9100 -4.1252 10.1872 44 1 9.8259 -4.3057 8.6767 45 1 6.8170 -4.2041 9.0788 46 1 7.7788 -5.1758 7.9132 47 1 8.7756 -3.9718 5.3163 48 1 7.6874 -2.7058 4.6677 49 1 6.8047 -4.9203 4.2354 50 1 6.8880 -5.2967 5.9647 51 1 3.6412 -0.1156 4.0767 52 1 2.8303 1.0426 2.0607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608542_12335836.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:49:40 Heat of formation + Delta-G solvation = -71.861596 kcal Electronic energy + Delta-G solvation = -29227.834054 eV Core-core repulsion = 25508.554989 eV Total energy + Delta-G solvation = -3719.279065 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.183 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.46015 -40.28867 -37.87810 -37.48063 -36.15824 -34.56746 -33.51089 -31.97909 -31.65972 -29.79650 -29.60040 -27.21699 -25.83888 -24.91139 -23.88265 -23.71024 -22.58278 -21.75482 -21.01864 -19.79589 -18.48538 -18.00898 -17.69757 -17.06120 -16.97452 -16.51846 -16.09456 -16.01653 -15.68231 -15.54270 -15.36346 -15.07116 -14.85847 -14.71977 -14.43852 -14.37685 -14.25753 -14.15155 -13.87937 -13.57415 -13.24333 -13.04020 -12.91908 -12.73648 -12.60827 -12.41092 -12.29131 -12.24443 -12.18958 -12.08665 -11.89557 -11.85214 -11.72100 -11.56594 -11.33013 -10.88157 -10.48458 -10.34519 -10.30858 -10.11833 -9.90718 -9.65685 -9.61032 0.21455 0.41816 1.12756 1.41257 1.46390 1.60276 1.72247 1.82931 1.86300 2.04806 2.07532 2.63769 2.71226 3.45524 3.63403 3.77171 3.83200 3.91005 3.99737 4.03666 4.11528 4.14073 4.15831 4.25090 4.27038 4.34108 4.41586 4.42413 4.48790 4.54775 4.55592 4.65565 4.66693 4.68719 4.71659 4.75622 4.95004 4.95931 4.99020 5.05714 5.08220 5.12987 5.16038 5.23119 5.30398 5.33923 5.37672 5.39773 5.43571 5.51400 5.52291 5.55913 5.59573 5.65240 5.98538 6.52619 6.79834 7.21383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.081 4.081 3 Si 0.978 3.022 4 H -0.267 1.267 5 H -0.267 1.267 6 H -0.250 1.250 7 C -0.093 4.093 8 C -0.102 4.102 9 C -0.115 4.115 10 C -0.071 4.071 11 C -0.102 4.102 12 C 0.523 3.477 13 O -0.577 6.577 14 N -0.602 5.602 15 C 0.075 3.925 16 C -0.127 4.127 17 C -0.418 4.418 18 Si 1.045 2.955 19 C -0.431 4.431 20 C -0.126 4.126 21 C -0.122 4.122 22 C -0.399 4.399 23 C -0.437 4.437 24 C 0.114 3.886 25 C -0.114 4.114 26 C -0.139 4.139 27 H 0.398 0.602 28 H 0.091 0.909 29 H 0.134 0.866 30 H 0.138 0.862 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.054 0.946 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.096 0.904 46 H 0.091 0.909 47 H 0.095 0.905 48 H 0.052 0.948 49 H 0.045 0.955 50 H 0.111 0.889 51 H 0.134 0.866 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.725 -2.411 5.086 5.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.192 4.192 3 Si 0.803 3.197 4 H -0.192 1.192 5 H -0.192 1.192 6 H -0.174 1.174 7 C -0.093 4.093 8 C -0.120 4.120 9 C -0.132 4.132 10 C -0.072 4.072 11 C -0.141 4.141 12 C 0.313 3.687 13 O -0.457 6.457 14 N -0.334 5.334 15 C -0.048 4.048 16 C -0.166 4.166 17 C -0.504 4.504 18 Si 1.235 2.765 19 C -0.515 4.515 20 C -0.163 4.163 21 C -0.160 4.160 22 C -0.486 4.486 23 C -0.521 4.521 24 C -0.007 4.007 25 C -0.132 4.132 26 C -0.157 4.157 27 H 0.248 0.752 28 H 0.109 0.891 29 H 0.152 0.848 30 H 0.155 0.845 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.114 0.886 34 H 0.132 0.868 35 H 0.090 0.910 36 H 0.115 0.885 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.114 0.886 46 H 0.110 0.890 47 H 0.114 0.886 48 H 0.071 0.929 49 H 0.063 0.937 50 H 0.129 0.871 51 H 0.152 0.848 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.108 -1.762 5.004 5.420 hybrid contribution 0.296 0.299 -0.820 0.922 sum -0.812 -1.463 4.184 4.506 Atomic orbital electron populations 1.86457 1.17276 1.82196 1.51005 1.24751 0.85664 1.10667 0.98086 0.85298 0.79212 0.74974 0.80241 1.19184 1.19166 1.17440 1.19550 0.99065 0.94807 0.95902 1.21148 0.98814 0.93936 0.98101 1.21282 0.97811 1.00434 0.93720 1.19586 0.97571 0.93715 0.96320 1.20928 0.93255 1.02649 0.97228 1.20726 0.87795 0.77171 0.83029 1.90725 1.69837 1.58820 1.26270 1.47569 1.17045 1.54857 1.13963 1.22276 1.01956 0.98438 0.82113 1.22776 0.97302 0.94787 1.01701 1.26509 1.12890 1.07245 1.03773 0.79047 0.65541 0.67012 0.64910 1.26897 1.15485 1.07910 1.01208 1.22095 1.01886 0.96035 0.96327 1.21874 0.98016 0.94793 1.01309 1.26573 0.99991 1.11350 1.10699 1.25661 1.01399 1.05122 1.19906 1.20011 0.81385 0.96419 1.02918 1.21126 0.99488 0.94671 0.97878 1.21135 0.99949 0.99837 0.94754 0.75211 0.89147 0.84838 0.84454 0.85215 0.85516 0.88587 0.86782 0.91012 0.88534 0.92693 0.90153 0.90994 0.91114 0.91307 0.92552 0.91551 0.92247 0.88564 0.89016 0.88640 0.92855 0.93665 0.87130 0.84768 0.85825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.40 12.81 -148.98 -1.91 -3.31 16 2 C -0.08 -0.22 2.79 71.24 0.20 -0.02 16 3 Si 0.98 2.00 25.14 68.60 1.72 3.73 16 4 H -0.27 -1.31 7.04 99.48 0.70 -0.61 16 5 H -0.27 -1.24 7.11 99.48 0.71 -0.53 16 6 H -0.25 -0.16 7.11 99.48 0.71 0.55 16 7 C -0.09 -0.70 5.38 -19.87 -0.11 -0.81 16 8 C -0.10 -0.71 9.69 22.27 0.22 -0.49 16 9 C -0.11 -0.65 9.70 22.27 0.22 -0.43 16 10 C -0.07 -0.37 4.37 -19.87 -0.09 -0.46 16 11 C -0.10 0.10 4.56 29.10 0.13 0.23 16 12 C 0.52 2.35 7.16 87.66 0.63 2.98 16 13 O -0.58 -8.56 16.04 -3.03 -0.05 -8.60 16 14 N -0.60 0.95 1.83 -833.07 -1.53 -0.58 16 15 C 0.08 -0.67 5.00 87.73 0.44 -0.24 16 16 C -0.13 1.13 5.53 32.80 0.18 1.31 16 17 C -0.42 2.00 4.38 73.32 0.32 2.32 16 18 Si 1.04 -5.25 9.04 68.60 0.62 -4.63 16 19 C -0.43 0.33 5.94 73.18 0.44 0.76 16 20 C -0.13 0.20 5.97 32.07 0.19 0.39 16 21 C -0.12 0.45 6.10 31.82 0.19 0.64 16 22 C -0.40 2.94 4.75 72.93 0.35 3.29 16 23 C -0.44 -0.06 5.19 69.96 0.36 0.30 16 24 C 0.11 -0.08 4.84 84.22 0.41 0.33 16 25 C -0.11 -0.74 9.70 22.27 0.22 -0.53 16 26 C -0.14 -1.07 8.67 22.27 0.19 -0.88 16 27 H 0.40 -2.76 8.74 -74.06 -0.65 -3.40 16 28 H 0.09 -0.07 7.96 -2.39 -0.02 -0.09 16 29 H 0.13 0.56 8.06 -2.91 -0.02 0.54 16 30 H 0.14 0.21 8.06 -2.91 -0.02 0.18 16 31 H 0.13 -0.84 7.75 -2.38 -0.02 -0.85 16 32 H 0.13 -0.63 5.66 -2.38 -0.01 -0.64 16 33 H 0.10 -1.17 7.65 -2.39 -0.02 -1.18 16 34 H 0.11 -1.46 5.64 -2.39 -0.01 -1.47 16 35 H 0.07 -0.67 5.98 -2.39 -0.01 -0.68 16 36 H 0.10 -1.17 8.14 -2.39 -0.02 -1.19 16 37 H 0.05 -0.04 7.56 -2.39 -0.02 -0.06 16 38 H 0.08 -0.43 7.89 -2.39 -0.02 -0.45 16 39 H 0.07 0.04 8.04 -2.39 -0.02 0.02 16 40 H 0.07 0.00 8.04 -2.38 -0.02 -0.02 16 41 H 0.07 -0.20 8.14 -2.38 -0.02 -0.22 16 42 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 43 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 44 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 45 H 0.10 -0.96 8.01 -2.39 -0.02 -0.97 16 46 H 0.09 -0.84 7.20 -2.39 -0.02 -0.86 16 47 H 0.10 -0.13 8.02 -2.39 -0.02 -0.14 16 48 H 0.05 0.35 8.02 -2.39 -0.02 0.33 16 49 H 0.04 0.21 7.89 -2.38 -0.02 0.20 16 50 H 0.11 -0.83 6.00 -2.39 -0.01 -0.84 16 51 H 0.13 0.38 8.06 -2.91 -0.02 0.35 16 52 H 0.12 0.66 4.87 -2.91 -0.01 0.65 16 Total: 0.00 -20.97 391.65 4.35 -16.61 By element: Atomic # 1 Polarization: -12.92 SS G_CDS: 1.00 Total: -11.91 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 4.48 Total: 8.69 kcal Atomic # 7 Polarization: 0.95 SS G_CDS: -1.53 Total: -0.58 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: -1.96 Total: -11.92 kcal Atomic # 14 Polarization: -3.24 SS G_CDS: 2.34 Total: -0.90 kcal Total: -20.97 4.35 -16.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608542_12335836.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.248 kcal (2) G-P(sol) polarization free energy of solvation -20.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds