Wall clock time and date at job start Sun Mar 7 2021 06:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86305 * 109.46829 * 2 1 4 4 H 1.48500 * 109.47272 * 300.00448 * 3 2 1 5 5 H 1.48499 * 109.46911 * 60.00467 * 3 2 1 6 6 H 1.48498 * 109.47333 * 180.02562 * 3 2 1 7 7 C 1.50700 * 109.47018 * 240.00442 * 2 1 3 8 8 C 1.34198 * 126.54116 * 104.99482 * 7 2 1 9 9 N 1.36863 * 109.96550 * 179.97438 * 8 7 2 10 10 C 1.37400 * 109.98234 * 0.02562 * 9 8 7 11 11 C 1.39330 * 133.24725 * 180.02562 * 10 9 8 12 12 C 1.36355 * 120.23380 * 179.78830 * 11 10 9 13 13 C 1.40170 * 120.66657 * 0.44263 * 12 11 10 14 14 C 1.47651 * 119.97071 * 179.79496 * 13 12 11 15 15 O 1.21581 * 119.99859 * 185.40278 * 14 13 12 16 16 N 1.34777 * 120.00346 * 5.40731 * 14 13 12 17 17 C 1.43941 * 122.79691 * 355.05654 * 16 14 13 18 18 C 1.55537 * 110.05659 * 290.98990 * 17 16 14 19 19 C 1.56805 * 111.26804 * 322.52055 * 18 17 16 20 20 Si 1.83041 * 113.76391 * 319.75123 * 19 18 17 21 21 C 1.87581 * 112.75041 * 208.02085 * 20 19 18 22 22 C 1.56451 * 98.94396 * 100.61531 * 21 20 19 23 23 C 1.53798 * 109.81544 * 39.19589 * 22 21 20 24 24 C 1.55741 * 111.41689 * 312.34098 * 23 22 21 25 25 C 1.88530 * 109.74948 * 84.94118 * 20 19 18 26 26 C 1.46422 * 104.62648 * 294.16924 * 25 20 19 27 27 C 1.39193 * 120.05357 * 359.51518 * 13 12 11 28 28 C 1.39224 * 119.39194 * 0.25655 * 27 13 12 29 29 H 0.96705 * 114.00126 * 299.98864 * 1 2 3 30 30 H 1.08998 * 109.47855 * 119.99941 * 2 1 3 31 31 H 1.07996 * 125.01250 * 359.97438 * 8 7 2 32 32 H 0.97003 * 125.00743 * 179.97438 * 9 8 7 33 33 H 1.07996 * 119.88232 * 359.97238 * 11 10 9 34 34 H 1.08002 * 119.66853 * 180.23842 * 12 11 10 35 35 H 1.09001 * 109.37022 * 51.16874 * 17 16 14 36 36 H 1.08994 * 109.37132 * 170.92665 * 17 16 14 37 37 H 1.09002 * 109.11732 * 82.97820 * 18 17 16 38 38 H 1.08996 * 109.11907 * 202.11557 * 18 17 16 39 39 H 1.09002 * 108.62666 * 80.85929 * 19 18 17 40 40 H 1.09009 * 108.62495 * 198.78575 * 19 18 17 41 41 H 1.09002 * 111.50168 * 218.04538 * 21 20 19 42 42 H 1.09001 * 111.50302 * 343.18471 * 21 20 19 43 43 H 1.09005 * 109.40906 * 279.09312 * 22 21 20 44 44 H 1.08999 * 109.36803 * 159.27369 * 22 21 20 45 45 H 1.09003 * 109.09867 * 191.81894 * 23 22 21 46 46 H 1.09003 * 109.00987 * 72.79450 * 23 22 21 47 47 H 1.09002 * 111.14834 * 270.05839 * 24 23 22 48 48 H 1.08999 * 111.19057 * 145.84279 * 24 23 22 49 49 H 1.09001 * 110.40182 * 175.38880 * 25 20 19 50 50 H 1.09002 * 110.39857 * 52.93737 * 25 20 19 51 51 H 1.09002 * 108.75683 * 178.71995 * 26 25 20 52 52 H 1.09006 * 108.75586 * 296.84380 * 26 25 20 53 53 H 1.08004 * 120.30130 * 180.27689 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 1 1.5548 2.4566 -1.2124 5 1 1.5549 2.4565 1.2126 6 1 3.5349 1.7567 -0.0006 7 6 1.9313 -0.7103 -1.2305 8 6 2.4606 -0.1385 -2.3231 9 7 2.8031 -1.1003 -3.2346 10 6 2.4956 -2.3453 -2.7414 11 6 2.6352 -3.6348 -3.2502 12 6 2.2349 -4.7105 -2.5140 13 6 1.6705 -4.5367 -1.2428 14 6 1.2382 -5.7120 -0.4607 15 8 0.6598 -5.5587 0.5977 16 7 1.4848 -6.9549 -0.9199 17 6 2.0710 -7.2074 -2.2101 18 6 1.0672 -6.8270 -3.3357 19 6 -0.4035 -7.1943 -2.9342 20 14 -0.5524 -8.7994 -2.0671 21 6 -2.2224 -9.6127 -2.3282 22 6 -1.8183 -10.6505 -3.4271 23 6 -0.4311 -11.2333 -3.1089 24 6 0.5907 -10.1111 -2.7595 25 6 -0.2302 -8.5606 -0.2250 26 6 1.1779 -8.1672 -0.1438 27 6 1.5225 -3.2573 -0.7148 28 6 1.9347 -2.1576 -1.4625 29 1 -0.3934 0.4416 0.7652 30 1 1.7924 -0.5138 0.8899 31 1 2.5962 0.9238 -2.4624 32 1 3.2032 -0.9282 -4.1013 33 1 3.0646 -3.7831 -4.2299 34 1 2.3509 -5.7063 -2.9157 35 1 2.9777 -6.6122 -2.3180 36 1 2.3207 -8.2651 -2.2930 37 1 1.1292 -5.7548 -3.5219 38 1 1.3323 -7.3634 -4.2467 39 1 -0.7932 -6.4103 -2.2849 40 1 -1.0121 -7.2312 -3.8378 41 1 -2.5723 -10.1067 -1.4217 42 1 -2.9591 -8.9016 -2.7020 43 1 -1.7899 -10.1569 -4.3985 44 1 -2.5527 -11.4556 -3.4514 45 1 -0.0698 -11.7876 -3.9752 46 1 -0.5175 -11.9134 -2.2615 47 1 1.1036 -9.7542 -3.6527 48 1 1.3042 -10.4480 -2.0075 49 1 -0.3958 -9.4935 0.3138 50 1 -0.8685 -7.7718 0.1732 51 1 1.4321 -7.9882 0.9009 52 1 1.7927 -8.9867 -0.5161 53 1 1.0923 -3.1190 0.2662 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608542_13287722.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:31:44 Heat of formation + Delta-G solvation = 23.498959 kcal Electronic energy + Delta-G solvation = -32922.342553 eV Core-core repulsion = 28885.320440 eV Total energy + Delta-G solvation = -4037.022113 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 372.178 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.60115 -41.49572 -38.23826 -37.84076 -37.51550 -36.12795 -34.29183 -33.30599 -31.90148 -30.69540 -30.20959 -29.73413 -27.69396 -26.39804 -25.34417 -24.89256 -23.39783 -23.15818 -22.58252 -20.99101 -20.78075 -19.79480 -19.00075 -18.53823 -18.37414 -17.71195 -17.08149 -16.43204 -16.18287 -16.00919 -15.68025 -15.59518 -15.58503 -15.38465 -15.10666 -14.85524 -14.77974 -14.66463 -14.63349 -14.52722 -14.16561 -13.94121 -13.53253 -13.42080 -12.98095 -12.87055 -12.76179 -12.55642 -12.49269 -12.36337 -12.21444 -12.15422 -12.06133 -11.95694 -11.82467 -11.65249 -11.37992 -11.25721 -10.91483 -10.74318 -10.37360 -10.28186 -10.21123 -10.10930 -9.73708 -9.24155 -8.76177 -0.13629 0.23499 1.18650 1.43620 1.48617 1.60557 1.70475 1.83075 1.85260 1.91405 2.00954 2.07211 2.12235 2.65288 2.89674 3.54346 3.60824 3.70149 3.78802 3.84959 4.00589 4.07408 4.15135 4.16043 4.18967 4.21937 4.27124 4.31851 4.44227 4.45227 4.50784 4.56512 4.62483 4.65396 4.69051 4.73110 4.74668 4.77391 4.86889 4.94527 5.03062 5.09154 5.12830 5.17910 5.20872 5.27412 5.31638 5.33970 5.40806 5.43550 5.45273 5.48824 5.55293 5.58450 5.63566 5.65493 6.01299 6.46342 6.57811 6.84090 7.14843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.569 6.569 2 C -0.065 4.065 3 Si 0.997 3.003 4 H -0.252 1.252 5 H -0.259 1.259 6 H -0.254 1.254 7 C -0.185 4.185 8 C 0.065 3.935 9 N -0.573 5.573 10 C 0.112 3.888 11 C -0.136 4.136 12 C -0.129 4.129 13 C -0.179 4.179 14 C 0.567 3.433 15 O -0.589 6.589 16 N -0.594 5.594 17 C 0.051 3.949 18 C -0.161 4.161 19 C -0.415 4.415 20 Si 1.043 2.957 21 C -0.431 4.431 22 C -0.125 4.125 23 C -0.121 4.121 24 C -0.393 4.393 25 C -0.441 4.441 26 C 0.114 3.886 27 C -0.023 4.023 28 C -0.134 4.134 29 H 0.392 0.608 30 H 0.067 0.933 31 H 0.200 0.800 32 H 0.438 0.562 33 H 0.164 0.836 34 H 0.231 0.769 35 H 0.116 0.884 36 H 0.132 0.868 37 H 0.091 0.909 38 H 0.115 0.885 39 H 0.041 0.959 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.069 0.931 46 H 0.060 0.940 47 H 0.101 0.899 48 H 0.096 0.904 49 H 0.100 0.900 50 H 0.049 0.951 51 H 0.046 0.954 52 H 0.121 0.879 53 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.232 -0.934 -7.499 9.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.378 6.378 2 C -0.173 4.173 3 Si 0.818 3.182 4 H -0.175 1.175 5 H -0.183 1.183 6 H -0.177 1.177 7 C -0.192 4.192 8 C -0.062 4.062 9 N -0.177 5.177 10 C 0.002 3.998 11 C -0.156 4.156 12 C -0.146 4.146 13 C -0.183 4.183 14 C 0.359 3.641 15 O -0.471 6.471 16 N -0.325 5.325 17 C -0.071 4.071 18 C -0.198 4.198 19 C -0.501 4.501 20 Si 1.233 2.767 21 C -0.516 4.516 22 C -0.163 4.163 23 C -0.159 4.159 24 C -0.481 4.481 25 C -0.524 4.524 26 C -0.007 4.007 27 C -0.043 4.043 28 C -0.138 4.138 29 H 0.242 0.758 30 H 0.085 0.915 31 H 0.216 0.784 32 H 0.279 0.721 33 H 0.182 0.818 34 H 0.246 0.754 35 H 0.134 0.866 36 H 0.149 0.851 37 H 0.109 0.891 38 H 0.133 0.867 39 H 0.060 0.940 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.079 0.921 47 H 0.120 0.880 48 H 0.115 0.885 49 H 0.119 0.881 50 H 0.068 0.932 51 H 0.065 0.935 52 H 0.139 0.861 53 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.382 -0.191 -7.591 9.919 hybrid contribution -1.119 0.243 0.983 1.509 sum 5.264 0.053 -6.608 8.448 Atomic orbital electron populations 1.86500 1.18461 1.82385 1.50431 1.24386 0.84811 1.11559 0.96572 0.85078 0.79583 0.72553 0.81000 1.17514 1.18256 1.17734 1.19935 1.09735 0.91386 0.98134 1.22021 1.00147 0.95481 0.88589 1.41694 1.54222 1.03274 1.18542 1.18792 0.99547 0.87924 0.93530 1.20225 1.05153 0.87701 1.02500 1.23637 0.94545 1.04391 0.92053 1.19547 1.09043 0.91926 0.97793 1.18349 0.77847 0.83542 0.84321 1.90739 1.43948 1.86550 1.25849 1.47309 1.61519 1.04640 1.18990 1.22817 0.97196 1.05700 0.81379 1.23600 0.92841 1.04198 0.99194 1.26532 0.99669 1.16264 1.07633 0.79080 0.67203 0.65934 0.64483 1.26888 1.16652 1.05993 1.02027 1.22101 0.97165 0.98421 0.98617 1.21865 0.93416 0.98641 1.01967 1.26517 1.05155 1.08732 1.07697 1.25694 0.99733 1.04203 1.22776 1.20104 0.97374 0.86474 0.96758 1.20593 0.94463 0.90792 0.98428 1.19156 1.05658 0.93265 0.95733 0.75818 0.91499 0.78386 0.72081 0.81805 0.75441 0.86643 0.85064 0.89077 0.86683 0.94039 0.90116 0.90919 0.91453 0.91304 0.92534 0.91256 0.92145 0.88019 0.88509 0.88129 0.93246 0.93503 0.86092 0.87564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -3.67 12.86 -148.98 -1.92 -5.59 16 2 C -0.06 -0.27 3.05 71.24 0.22 -0.06 16 3 Si 1.00 -0.97 26.09 68.60 1.79 0.82 16 4 H -0.25 0.21 7.03 99.48 0.70 0.91 16 5 H -0.26 0.08 7.11 99.48 0.71 0.78 16 6 H -0.25 0.14 7.11 99.48 0.71 0.84 16 7 C -0.18 -1.27 5.61 -18.61 -0.10 -1.38 16 8 C 0.06 0.05 10.43 82.99 0.87 0.92 16 9 N -0.57 0.88 6.05 -187.49 -1.13 -0.25 16 10 C 0.11 0.41 7.27 39.19 0.28 0.70 16 11 C -0.14 0.14 10.00 22.09 0.22 0.36 16 12 C -0.13 -0.06 5.80 22.30 0.13 0.07 16 13 C -0.18 -1.63 5.84 -20.09 -0.12 -1.74 16 14 C 0.57 6.57 7.11 86.73 0.62 7.19 16 15 O -0.59 -12.42 16.40 -3.97 -0.07 -12.48 16 16 N -0.59 -1.38 1.83 -906.92 -1.66 -3.04 16 17 C 0.05 -0.35 4.69 87.73 0.41 0.06 16 18 C -0.16 1.07 5.02 32.80 0.16 1.24 16 19 C -0.42 0.57 4.38 73.31 0.32 0.89 16 20 Si 1.04 -3.69 9.04 68.60 0.62 -3.07 16 21 C -0.43 -0.23 5.94 73.18 0.44 0.21 16 22 C -0.13 0.16 5.97 32.07 0.19 0.35 16 23 C -0.12 0.49 6.10 31.81 0.19 0.69 16 24 C -0.39 3.10 4.74 72.93 0.35 3.44 16 25 C -0.44 -0.91 5.19 69.95 0.36 -0.54 16 26 C 0.11 0.13 4.80 84.22 0.40 0.53 16 27 C -0.02 -0.30 9.64 22.74 0.22 -0.08 16 28 C -0.13 -1.33 6.34 -20.21 -0.13 -1.46 16 29 H 0.39 -1.06 8.74 -74.05 -0.65 -1.71 16 30 H 0.07 0.26 7.96 -2.39 -0.02 0.24 16 31 H 0.20 -1.12 6.30 -2.91 -0.02 -1.14 16 32 H 0.44 -4.04 8.96 -92.71 -0.83 -4.87 16 33 H 0.16 -1.46 8.06 -2.91 -0.02 -1.48 16 34 H 0.23 -1.51 1.64 -34.62 -0.06 -1.56 16 35 H 0.12 -1.12 5.55 -2.39 -0.01 -1.13 16 36 H 0.13 -1.74 5.63 -2.39 -0.01 -1.76 16 37 H 0.09 -0.43 4.46 -2.39 -0.01 -0.44 16 38 H 0.11 -1.49 8.14 -2.39 -0.02 -1.51 16 39 H 0.04 0.24 7.56 -2.39 -0.02 0.22 16 40 H 0.08 -0.20 7.90 -2.38 -0.02 -0.22 16 41 H 0.07 0.12 8.04 -2.39 -0.02 0.10 16 42 H 0.07 0.13 8.04 -2.39 -0.02 0.11 16 43 H 0.07 -0.18 8.14 -2.38 -0.02 -0.20 16 44 H 0.06 0.00 8.14 -2.39 -0.02 -0.01 16 45 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 46 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 47 H 0.10 -1.15 8.01 -2.39 -0.02 -1.16 16 48 H 0.10 -1.00 7.20 -2.39 -0.02 -1.02 16 49 H 0.10 -0.05 8.02 -2.39 -0.02 -0.07 16 50 H 0.05 0.47 8.02 -2.39 -0.02 0.45 16 51 H 0.05 0.30 7.95 -2.39 -0.02 0.28 16 52 H 0.12 -0.90 6.01 -2.38 -0.01 -0.91 16 53 H 0.11 1.82 7.65 -2.91 -0.02 1.80 16 Total: 0.00 -29.15 393.85 2.84 -26.30 By element: Atomic # 1 Polarization: -14.22 SS G_CDS: 0.18 Total: -14.04 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 5.04 Total: 11.36 kcal Atomic # 7 Polarization: -0.50 SS G_CDS: -2.80 Total: -3.29 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -1.98 Total: -18.07 kcal Atomic # 14 Polarization: -4.66 SS G_CDS: 2.41 Total: -2.25 kcal Total: -29.15 2.84 -26.30 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608542_13287722.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.800 kcal (2) G-P(sol) polarization free energy of solvation -29.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds