Wall clock time and date at job start Sun Mar 7 2021 06:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36420 * 125.79965 * 2 1 4 4 C 1.47383 * 127.19068 * 0.02562 * 3 2 1 5 5 O 1.21607 * 119.99822 * 4.88685 * 4 3 2 6 6 N 1.34783 * 119.99721 * 184.61240 * 4 3 2 7 7 C 1.46089 * 122.76596 * 355.23816 * 6 4 3 8 8 C 1.46006 * 114.87568 * 78.52876 * 7 6 4 9 9 C 1.56528 * 108.97158 * 60.18248 * 8 7 6 10 10 Si 1.83376 * 108.23887 * 291.78045 * 9 8 7 11 11 C 1.88361 * 111.35550 * 322.39423 * 10 9 8 12 12 C 1.56251 * 99.09011 * 221.45911 * 11 10 9 13 13 C 1.53720 * 109.67999 * 39.76758 * 12 11 10 14 14 C 1.55525 * 111.35749 * 311.79391 * 13 12 11 15 15 C 1.87776 * 113.96671 * 86.62824 * 10 9 8 16 16 C 1.44788 * 122.76174 * 174.95192 * 6 4 3 17 17 C 1.47017 * 105.61503 * 180.28290 * 3 2 1 18 18 C 1.34176 * 105.95809 * 359.56744 * 17 3 2 19 19 C 1.50699 * 125.44365 * 180.14265 * 18 17 3 20 20 O 1.42902 * 109.46930 * 300.32103 * 19 18 17 21 21 Si 1.86300 * 109.47397 * 180.31885 * 19 18 17 22 22 H 1.48504 * 109.46856 * 59.99693 * 21 19 18 23 23 H 1.48491 * 109.47041 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47034 * 300.00299 * 21 19 18 25 25 O 1.33653 * 125.80554 * 180.02562 * 2 1 3 26 26 H 1.09003 * 109.47007 * 90.00403 * 1 2 3 27 27 H 1.09006 * 109.46858 * 210.00057 * 1 2 3 28 28 H 1.09003 * 109.47285 * 329.99864 * 1 2 3 29 29 H 1.09001 * 108.40395 * 199.93039 * 7 6 4 30 30 H 1.09005 * 108.40269 * 317.13225 * 7 6 4 31 31 H 1.09001 * 109.55748 * 180.02562 * 8 7 6 32 32 H 1.08998 * 109.55889 * 300.23237 * 8 7 6 33 33 H 1.08998 * 109.70554 * 51.45884 * 9 8 7 34 34 H 1.08990 * 109.71091 * 172.04977 * 9 8 7 35 35 H 1.09001 * 111.47100 * 338.93249 * 11 10 9 36 36 H 1.08999 * 111.46930 * 103.99014 * 11 10 9 37 37 H 1.08998 * 109.43695 * 279.69405 * 12 11 10 38 38 H 1.08995 * 109.39099 * 159.80852 * 12 11 10 39 39 H 1.09001 * 109.10617 * 191.28912 * 13 12 11 40 40 H 1.09004 * 109.02666 * 72.23748 * 13 12 11 41 41 H 1.09003 * 111.11234 * 270.25721 * 14 13 12 42 42 H 1.08996 * 111.14881 * 146.14827 * 14 13 12 43 43 H 1.08998 * 110.13800 * 80.06472 * 15 10 9 44 44 H 1.09008 * 110.13775 * 201.82184 * 15 10 9 45 45 H 1.09001 * 110.04705 * 50.60867 * 16 6 4 46 46 H 1.09001 * 110.03678 * 172.11184 * 16 6 4 47 47 H 1.08006 * 127.02034 * 179.70724 * 17 3 2 48 48 H 1.08996 * 109.46738 * 60.31415 * 19 18 17 49 49 H 0.96709 * 113.99628 * 299.99318 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.1065 0.0000 4 6 1.8738 2.5158 0.0005 5 8 0.6926 2.7902 0.0907 6 7 2.7893 3.5006 -0.0934 7 6 4.2277 3.2453 -0.0966 8 6 4.7653 2.7758 -1.3704 9 6 4.4943 3.8590 -2.4673 10 14 2.6870 3.9301 -2.7696 11 6 1.9110 2.2154 -2.6939 12 6 0.9348 2.3324 -3.9084 13 6 1.6250 3.0863 -5.0565 14 6 2.3018 4.3920 -4.5507 15 6 1.7642 5.0816 -1.6085 16 6 2.4280 4.8982 -0.2055 17 6 3.6849 0.5992 -0.0070 18 6 3.5860 -0.7389 -0.0007 19 6 4.7460 -1.7009 -0.0013 20 8 5.5420 -1.4865 -1.1685 21 14 4.1029 -3.4494 -0.0008 22 1 3.2742 -3.6723 -1.2128 23 1 5.2459 -4.3972 -0.0007 24 1 3.2756 -3.6721 1.2122 25 8 2.2889 -1.0839 -0.0005 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5139 29 1 4.7415 4.1675 0.1748 30 1 4.4461 2.4973 0.6657 31 1 5.8389 2.6133 -1.2756 32 1 4.2782 1.8416 -1.6499 33 1 4.8473 4.8300 -2.1201 34 1 5.0112 3.5875 -3.3876 35 1 2.6539 1.4339 -2.8529 36 1 1.3696 2.0635 -1.7601 37 1 0.0403 2.8756 -3.6037 38 1 0.6558 1.3343 -4.2458 39 1 0.8833 3.3391 -5.8141 40 1 2.3826 2.4407 -5.5008 41 1 1.6124 5.2351 -4.5973 42 1 3.2145 4.6032 -5.1078 43 1 1.8695 6.1140 -1.9417 44 1 0.7105 4.8056 -1.5653 45 1 1.7156 5.1637 0.5756 46 1 3.3187 5.5216 -0.1279 47 1 4.5927 1.1842 -0.0133 48 1 5.3542 -1.5371 0.8883 49 1 5.0643 -1.6151 -1.9995 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608542_13308374.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:33:35 Heat of formation + Delta-G solvation = -50.241706 kcal Electronic energy + Delta-G solvation = -30345.317414 eV Core-core repulsion = 26592.057426 eV Total energy + Delta-G solvation = -3753.259988 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.167 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.85437 -41.32040 -38.20286 -37.85058 -36.24310 -34.81607 -33.60211 -33.04945 -31.02723 -29.73741 -29.28349 -27.55504 -25.87845 -25.17460 -24.51245 -23.42988 -22.73794 -21.45497 -21.06951 -19.63781 -18.60085 -18.08946 -17.64831 -17.26239 -16.97260 -16.52579 -16.15204 -15.85015 -15.78756 -15.63421 -15.37005 -15.06584 -14.74360 -14.61358 -14.50666 -14.21274 -14.05960 -13.87388 -13.76465 -13.49085 -13.04313 -12.86202 -12.81580 -12.76151 -12.58336 -12.33857 -12.27673 -12.25057 -12.07282 -11.94757 -11.83085 -11.64270 -11.41844 -11.05043 -10.68402 -10.54061 -10.47210 -10.37378 -10.16784 -9.74593 -9.42495 0.25785 0.87399 1.09242 1.37257 1.44968 1.71643 1.74675 1.79869 1.91219 2.01171 2.09789 2.26998 2.71359 3.25607 3.49358 3.56626 3.81134 3.88090 4.06318 4.09837 4.14167 4.17537 4.24111 4.33657 4.40528 4.42031 4.47622 4.52332 4.57368 4.62682 4.62959 4.65274 4.67941 4.76628 4.86426 4.96300 4.98653 5.01935 5.02595 5.11734 5.13406 5.14095 5.26604 5.29948 5.32235 5.36088 5.45625 5.47451 5.50317 5.69532 5.94562 6.40501 6.58027 7.12123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.073 3.927 3 C -0.251 4.251 4 C 0.608 3.392 5 O -0.569 6.569 6 N -0.604 5.604 7 C 0.076 3.924 8 C -0.147 4.147 9 C -0.398 4.398 10 Si 1.028 2.972 11 C -0.431 4.431 12 C -0.120 4.120 13 C -0.117 4.117 14 C -0.422 4.422 15 C -0.433 4.433 16 C 0.116 3.884 17 C -0.158 4.158 18 C -0.068 4.068 19 C -0.026 4.026 20 O -0.532 6.532 21 Si 0.978 3.022 22 H -0.267 1.267 23 H -0.252 1.252 24 H -0.268 1.268 25 O -0.183 6.183 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.112 0.888 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.124 0.876 47 H 0.202 0.798 48 H 0.159 0.841 49 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.268 0.609 0.232 6.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.020 3.980 3 C -0.256 4.256 4 C 0.401 3.599 5 O -0.451 6.451 6 N -0.336 5.336 7 C -0.045 4.045 8 C -0.184 4.184 9 C -0.487 4.487 10 Si 1.218 2.782 11 C -0.514 4.514 12 C -0.157 4.157 13 C -0.155 4.155 14 C -0.507 4.507 15 C -0.519 4.519 16 C -0.006 4.006 17 C -0.177 4.177 18 C -0.116 4.116 19 C -0.137 4.137 20 O -0.339 6.339 21 Si 0.802 3.198 22 H -0.192 1.192 23 H -0.176 1.176 24 H -0.193 1.193 25 O -0.081 6.081 26 H 0.110 0.890 27 H 0.112 0.888 28 H 0.117 0.883 29 H 0.130 0.870 30 H 0.106 0.894 31 H 0.127 0.873 32 H 0.094 0.906 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.111 0.889 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.142 0.858 47 H 0.218 0.782 48 H 0.176 0.824 49 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 5.714 -0.266 0.771 5.772 hybrid contribution -1.200 0.290 -0.697 1.418 sum 4.514 0.024 0.074 4.515 Atomic orbital electron populations 1.20687 0.83488 1.05455 1.04777 1.23016 0.94430 0.83243 0.97319 1.21129 0.94322 0.93176 1.16952 1.16907 0.84685 0.84193 0.74090 1.90776 1.17935 1.84193 1.52178 1.47439 1.07429 1.06743 1.71988 1.20864 0.79033 1.05226 0.99371 1.21345 1.03471 0.99318 0.94307 1.26220 1.17253 1.02488 1.02755 0.79347 0.68021 0.65852 0.64979 1.27641 1.05492 1.18773 0.99534 1.21946 0.98601 0.99760 0.95434 1.21794 0.99647 0.96257 0.97812 1.26740 1.03981 0.98873 1.21065 1.27499 1.06799 1.11426 1.06160 1.21746 1.01649 0.80627 0.96620 1.23671 0.97222 0.93333 1.03436 1.23152 0.82595 0.96544 1.09269 1.24289 0.90141 1.05530 0.93746 1.86547 1.38434 1.93146 1.15814 0.85211 0.78847 0.74967 0.80752 1.19172 1.17591 1.19268 1.83658 1.17329 1.35312 1.71790 0.88951 0.88779 0.88272 0.87013 0.89418 0.87297 0.90603 0.88526 0.89376 0.90916 0.90242 0.93388 0.92696 0.92818 0.91717 0.91248 0.89756 0.88906 0.92470 0.92391 0.85759 0.78179 0.82422 0.75822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.29 9.94 71.24 0.71 0.42 16 2 C 0.07 0.38 7.30 25.26 0.18 0.56 16 3 C -0.25 -1.04 4.35 -18.99 -0.08 -1.12 16 4 C 0.61 3.69 4.10 86.65 0.36 4.05 16 5 O -0.57 -7.24 13.67 -4.05 -0.06 -7.29 16 6 N -0.60 0.11 1.63 -836.96 -1.36 -1.25 16 7 C 0.08 -0.51 4.39 84.31 0.37 -0.14 16 8 C -0.15 1.09 4.32 29.68 0.13 1.22 16 9 C -0.40 2.63 4.83 73.21 0.35 2.98 16 10 Si 1.03 -1.69 8.77 68.60 0.60 -1.09 16 11 C -0.43 -1.57 4.20 73.11 0.31 -1.26 16 12 C -0.12 -0.63 5.96 31.97 0.19 -0.44 16 13 C -0.12 -0.39 6.09 31.71 0.19 -0.20 16 14 C -0.42 -0.42 5.84 72.85 0.43 0.01 16 15 C -0.43 -0.42 5.08 73.13 0.37 -0.05 16 16 C 0.12 -0.12 5.77 87.84 0.51 0.39 16 17 C -0.16 0.14 7.25 23.65 0.17 0.31 16 18 C -0.07 0.01 6.20 24.76 0.15 0.17 16 19 C -0.03 0.12 2.97 71.24 0.21 0.33 16 20 O -0.53 2.68 12.86 -148.98 -1.92 0.77 16 21 Si 0.98 -1.59 27.37 68.60 1.88 0.28 16 22 H -0.27 -0.33 7.11 99.48 0.71 0.37 16 23 H -0.25 0.13 7.11 99.48 0.71 0.84 16 24 H -0.27 -0.50 7.11 99.48 0.71 0.21 16 25 O -0.18 -0.73 8.89 4.41 0.04 -0.69 16 26 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 27 H 0.09 -0.03 8.14 -2.38 -0.02 -0.04 16 28 H 0.10 0.61 6.40 -2.39 -0.02 0.59 16 29 H 0.11 -1.28 7.19 -2.39 -0.02 -1.30 16 30 H 0.09 -0.66 5.33 -2.38 -0.01 -0.67 16 31 H 0.11 -1.19 8.14 -2.39 -0.02 -1.21 16 32 H 0.08 -0.37 3.84 -2.39 -0.01 -0.38 16 33 H 0.10 -0.92 7.93 -2.39 -0.02 -0.93 16 34 H 0.09 -0.60 7.95 -2.39 -0.02 -0.62 16 35 H 0.07 0.21 7.12 -2.39 -0.02 0.20 16 36 H 0.08 0.55 3.14 -2.39 -0.01 0.54 16 37 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 41 H 0.07 0.13 8.03 -2.39 -0.02 0.12 16 42 H 0.08 -0.08 8.03 -2.39 -0.02 -0.10 16 43 H 0.09 -0.19 8.00 -2.39 -0.02 -0.21 16 44 H 0.06 0.42 7.65 -2.38 -0.02 0.40 16 45 H 0.06 0.16 8.10 -2.39 -0.02 0.14 16 46 H 0.12 -1.02 7.19 -2.39 -0.02 -1.04 16 47 H 0.20 -1.21 3.79 -2.91 -0.01 -1.22 16 48 H 0.16 -1.39 7.96 -2.39 -0.02 -1.41 16 49 H 0.39 -3.91 8.70 -74.05 -0.64 -4.56 16 Total: 0.00 -16.03 356.47 4.82 -11.22 By element: Atomic # 1 Polarization: -10.24 SS G_CDS: 1.08 Total: -9.16 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 4.55 Total: 7.21 kcal Atomic # 7 Polarization: 0.11 SS G_CDS: -1.36 Total: -1.25 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -1.93 Total: -7.22 kcal Atomic # 14 Polarization: -3.28 SS G_CDS: 2.48 Total: -0.81 kcal Total: -16.03 4.82 -11.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608542_13308374.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.026 kcal (2) G-P(sol) polarization free energy of solvation -16.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds