Wall clock time and date at job start Sun Mar 7 2021 06:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38505 * 119.85093 * 2 1 4 4 C 1.38097 * 120.39325 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.95789 * 180.02562 * 4 3 2 6 6 O 1.42903 * 109.46952 * 104.97880 * 5 4 3 7 7 Si 1.86299 * 109.47067 * 344.97644 * 5 4 3 8 8 H 1.48499 * 109.46912 * 60.00252 * 7 5 4 9 9 H 1.48509 * 109.46951 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47356 * 300.00030 * 7 5 4 11 11 C 1.38662 * 120.08383 * 359.97438 * 4 3 2 12 12 O 1.35661 * 120.15164 * 180.02562 * 11 4 3 13 13 C 1.40175 * 119.70280 * 0.02562 * 11 4 3 14 14 C 1.47528 * 120.19514 * 179.97438 * 13 11 4 15 15 O 1.21598 * 120.00211 * 240.63073 * 14 13 11 16 16 N 1.34780 * 120.00135 * 60.63055 * 14 13 11 17 17 C 1.46114 * 122.74403 * 358.97859 * 16 14 13 18 18 C 1.46002 * 114.84680 * 78.72253 * 17 16 14 19 19 C 1.56489 * 109.11086 * 60.17256 * 18 17 16 20 20 Si 1.83355 * 108.28173 * 291.77880 * 19 18 17 21 21 C 1.88355 * 111.31929 * 210.69657 * 20 19 18 22 22 C 1.56250 * 99.09234 * 97.70041 * 21 20 19 23 23 C 1.53718 * 109.68771 * 39.75456 * 22 21 20 24 24 C 1.55536 * 111.36048 * 311.82987 * 23 22 21 25 25 C 1.87792 * 113.97932 * 86.47487 * 20 19 18 26 26 C 1.44737 * 122.74343 * 178.97996 * 16 14 13 27 27 C 1.37834 * 119.85269 * 180.26058 * 2 1 3 28 28 H 1.08992 * 109.47061 * 90.00009 * 1 2 3 29 29 H 1.08996 * 109.46821 * 209.99991 * 1 2 3 30 30 H 1.08996 * 109.46747 * 329.99750 * 1 2 3 31 31 H 1.08003 * 119.80453 * 0.02562 * 3 2 1 32 32 H 1.09005 * 109.47008 * 224.97415 * 5 4 3 33 33 H 0.96701 * 113.99418 * 179.97438 * 6 5 4 34 34 H 0.96696 * 114.00031 * 269.97938 * 12 11 4 35 35 H 1.08990 * 108.40637 * 317.33434 * 17 16 14 36 36 H 1.08998 * 108.40792 * 200.11183 * 17 16 14 37 37 H 1.08998 * 109.53906 * 180.08677 * 18 17 16 38 38 H 1.08997 * 109.54098 * 300.26582 * 18 17 16 39 39 H 1.09001 * 109.70561 * 51.40252 * 19 18 17 40 40 H 1.09001 * 109.70210 * 172.01305 * 19 18 17 41 41 H 1.08998 * 111.47657 * 215.16879 * 21 20 19 42 42 H 1.09001 * 111.47249 * 340.23535 * 21 20 19 43 43 H 1.09002 * 109.43602 * 279.68534 * 22 21 20 44 44 H 1.08993 * 109.39302 * 159.79758 * 22 21 20 45 45 H 1.08993 * 109.11111 * 191.32789 * 23 22 21 46 46 H 1.08996 * 109.02619 * 72.27237 * 23 22 21 47 47 H 1.08997 * 111.10861 * 270.21930 * 24 23 22 48 48 H 1.09001 * 111.14282 * 146.11208 * 24 23 22 49 49 H 1.08996 * 110.13101 * 201.87675 * 25 20 19 50 50 H 1.08997 * 110.13169 * 80.13057 * 25 20 19 51 51 H 1.08995 * 110.01566 * 50.51254 * 26 16 14 52 52 H 1.09007 * 110.01122 * 171.84308 * 26 16 14 53 53 H 1.08000 * 120.04071 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.2013 0.0000 4 6 3.5773 1.2144 -0.0005 5 6 4.3175 2.5271 0.0001 6 8 4.8553 2.7701 1.3015 7 14 3.1446 3.9015 -0.4539 8 1 2.0392 3.9561 0.5363 9 1 3.8741 5.1950 -0.4539 10 1 2.5857 3.6490 -1.8063 11 6 4.2837 0.0212 -0.0005 12 8 5.6403 0.0324 -0.0005 13 6 3.5898 -1.1968 -0.0005 14 6 4.3304 -2.4727 -0.0011 15 8 4.1887 -3.2576 -0.9189 16 7 5.1642 -2.7684 1.0157 17 6 5.3963 -1.8607 2.1370 18 6 4.3456 -1.8568 3.1507 19 6 4.2099 -3.2946 3.7535 20 14 3.5393 -4.4018 2.4549 21 6 2.5002 -5.7834 3.2026 22 6 1.0812 -5.1598 3.0048 23 6 1.0094 -4.4588 1.6387 24 6 2.2391 -3.5339 1.4112 25 6 4.8503 -5.1465 1.3353 26 6 5.9030 -4.0110 1.0862 27 6 2.1931 -1.1954 -0.0054 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6508 2.1334 0.0004 32 1 5.1289 2.4870 -0.7267 33 1 5.3463 3.5999 1.3755 34 1 6.0336 0.0353 -0.8839 35 1 5.5001 -0.8491 1.7450 36 1 6.3354 -2.1381 2.6157 37 1 4.6045 -1.1528 3.9415 38 1 3.4004 -1.5619 2.6950 39 1 5.1887 -3.6537 4.0715 40 1 3.5310 -3.2731 4.6060 41 1 2.6092 -6.7123 2.6428 42 1 2.7288 -5.9279 4.2585 43 1 0.8907 -4.4339 3.7954 44 1 0.3301 -5.9484 3.0478 45 1 0.0995 -3.8606 1.5919 46 1 0.9806 -5.2137 0.8530 47 1 2.0466 -2.5269 1.7812 48 1 2.5277 -3.5149 0.3603 49 1 4.4041 -5.4580 0.3909 50 1 5.3242 -5.9964 1.8263 51 1 6.4268 -4.1874 0.1468 52 1 6.6164 -3.9746 1.9096 53 1 1.6514 -2.1297 -0.0101 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608542_13422088.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:34:38 Heat of formation + Delta-G solvation = -98.120795 kcal Electronic energy + Delta-G solvation = -34222.980973 eV Core-core repulsion = 30183.881032 eV Total energy + Delta-G solvation = -4039.099941 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.182 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.13777 -40.33892 -38.26055 -37.72255 -37.59939 -36.20237 -34.09020 -33.24946 -33.00043 -30.71881 -29.79173 -27.64790 -27.21754 -26.79644 -25.73058 -24.70639 -23.29850 -22.65513 -21.86024 -20.98713 -20.07182 -19.32431 -18.55189 -18.26245 -17.59624 -17.22882 -16.72552 -16.36682 -16.07635 -15.88299 -15.75278 -15.59613 -15.21535 -14.93799 -14.91454 -14.68244 -14.58894 -14.49548 -14.34364 -14.01488 -13.79269 -13.57547 -13.46104 -13.14844 -13.04813 -12.88482 -12.75497 -12.60838 -12.47606 -12.29859 -12.22818 -12.18871 -11.96048 -11.87958 -11.78294 -11.59465 -11.51554 -11.25378 -10.85047 -10.53357 -10.35853 -10.29769 -10.13096 -9.93864 -9.54160 -9.47450 -0.11386 0.10218 1.04038 1.34773 1.40548 1.58283 1.76750 1.81137 1.84280 1.95789 2.07099 2.44081 2.70640 3.00505 3.29597 3.39920 3.73428 3.81087 3.87374 4.04924 4.13200 4.15256 4.17124 4.20389 4.24436 4.30857 4.34976 4.41269 4.45498 4.50579 4.56404 4.58661 4.65842 4.70027 4.74433 4.84578 4.86621 4.89118 4.97498 5.02584 5.07319 5.10924 5.12079 5.14627 5.17005 5.22251 5.28615 5.30808 5.38041 5.43659 5.45979 5.51390 5.56451 5.63066 5.70576 6.45168 6.50004 6.57120 7.18186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.092 4.092 3 C -0.092 4.092 4 C -0.102 4.102 5 C -0.070 4.070 6 O -0.537 6.537 7 Si 0.940 3.060 8 H -0.246 1.246 9 H -0.254 1.254 10 H -0.247 1.247 11 C 0.158 3.842 12 O -0.482 6.482 13 C -0.150 4.150 14 C 0.585 3.415 15 O -0.525 6.525 16 N -0.597 5.597 17 C 0.086 3.914 18 C -0.129 4.129 19 C -0.410 4.410 20 Si 0.989 3.011 21 C -0.409 4.409 22 C -0.118 4.118 23 C -0.113 4.113 24 C -0.435 4.435 25 C -0.422 4.422 26 C 0.118 3.882 27 C -0.067 4.067 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.130 0.870 32 H 0.073 0.927 33 H 0.379 0.621 34 H 0.391 0.609 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.081 0.919 48 H 0.095 0.905 49 H 0.087 0.913 50 H 0.080 0.920 51 H 0.074 0.926 52 H 0.089 0.911 53 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.828 3.511 1.296 3.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.092 4.092 3 C -0.109 4.109 4 C -0.103 4.103 5 C -0.181 4.181 6 O -0.343 6.343 7 Si 0.762 3.238 8 H -0.170 1.170 9 H -0.178 1.178 10 H -0.171 1.171 11 C 0.113 3.887 12 O -0.293 6.293 13 C -0.153 4.153 14 C 0.375 3.625 15 O -0.402 6.402 16 N -0.330 5.330 17 C -0.036 4.036 18 C -0.167 4.167 19 C -0.497 4.497 20 Si 1.182 2.818 21 C -0.494 4.494 22 C -0.156 4.156 23 C -0.151 4.151 24 C -0.519 4.519 25 C -0.509 4.509 26 C -0.004 4.004 27 C -0.085 4.085 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.147 0.853 32 H 0.091 0.909 33 H 0.226 0.774 34 H 0.249 0.751 35 H 0.118 0.882 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.100 0.900 48 H 0.113 0.887 49 H 0.105 0.895 50 H 0.099 0.901 51 H 0.093 0.907 52 H 0.107 0.893 53 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.098 3.221 1.285 3.469 hybrid contribution 0.569 0.163 -0.383 0.705 sum 0.471 3.384 0.901 3.533 Atomic orbital electron populations 1.20840 0.90115 1.03451 1.03022 1.19813 0.96772 0.92136 1.00446 1.21064 0.92912 0.98528 0.98445 1.19478 0.93251 0.93465 1.04080 1.24522 1.03181 1.01025 0.89327 1.86543 1.74326 1.45065 1.28343 0.85855 0.79582 0.77239 0.81102 1.16985 1.17782 1.17078 1.18078 0.83053 0.90007 0.97595 1.84760 1.15186 1.96053 1.33304 1.20189 0.94616 0.92771 1.07733 1.17714 0.78099 0.85551 0.81169 1.90844 1.64316 1.49894 1.35098 1.47497 1.43909 1.19838 1.21764 1.20484 0.99174 0.96521 0.87428 1.20959 1.00258 0.96978 0.98469 1.26403 1.06973 1.05142 1.11175 0.79788 0.67217 0.67660 0.67152 1.26733 1.06138 1.10500 1.06076 1.21965 0.97173 0.99315 0.97146 1.21754 0.98094 0.98114 0.97131 1.27610 1.10581 1.04168 1.09583 1.27489 1.09662 1.02978 1.10752 1.21705 0.93712 0.82345 1.02682 1.21694 0.91852 0.99475 0.95461 0.90546 0.90882 0.91098 0.85257 0.90864 0.77389 0.75139 0.88229 0.90132 0.89913 0.91152 0.90355 0.90183 0.90516 0.90702 0.92040 0.91900 0.92109 0.92092 0.89996 0.88678 0.89451 0.90132 0.90717 0.89282 0.82768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.16 10.00 36.01 0.36 0.52 16 2 C -0.09 -0.05 5.87 -104.67 -0.61 -0.67 16 3 C -0.09 -0.06 8.30 -39.53 -0.33 -0.39 16 4 C -0.10 -0.08 5.30 -104.52 -0.55 -0.64 16 5 C -0.07 0.07 2.37 36.01 0.09 0.15 16 6 O -0.54 0.17 12.86 -35.23 -0.45 -0.28 16 7 Si 0.94 -1.11 25.49 -169.99 -4.33 -5.44 16 8 H -0.25 0.04 6.73 56.52 0.38 0.42 16 9 H -0.25 0.25 7.11 56.52 0.40 0.65 16 10 H -0.25 0.11 7.11 56.52 0.40 0.51 16 11 C 0.16 0.17 5.61 -38.70 -0.22 -0.04 16 12 O -0.48 0.12 9.98 -18.68 -0.19 -0.06 16 13 C -0.15 -0.29 4.12 -104.85 -0.43 -0.73 16 14 C 0.59 1.68 3.44 -12.47 -0.04 1.63 16 15 O -0.52 -3.17 15.36 5.28 0.08 -3.08 16 16 N -0.60 -0.53 1.59 -178.12 -0.28 -0.81 16 17 C 0.09 -0.01 4.47 -7.57 -0.03 -0.04 16 18 C -0.13 0.03 5.63 -28.17 -0.16 -0.13 16 19 C -0.41 0.30 4.83 39.04 0.19 0.49 16 20 Si 0.99 -0.17 8.75 -169.99 -1.49 -1.66 16 21 C -0.41 -0.25 5.95 38.90 0.23 -0.02 16 22 C -0.12 -0.10 5.96 -24.61 -0.15 -0.25 16 23 C -0.11 -0.11 6.09 -25.01 -0.15 -0.26 16 24 C -0.43 -0.45 2.43 38.51 0.09 -0.36 16 25 C -0.42 -0.30 5.06 39.23 0.20 -0.10 16 26 C 0.12 0.04 5.81 -2.91 -0.02 0.03 16 27 C -0.07 -0.10 7.14 -39.19 -0.28 -0.38 16 28 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 29 H 0.07 -0.13 8.08 -51.93 -0.42 -0.55 16 30 H 0.07 -0.15 8.08 -51.93 -0.42 -0.57 16 31 H 0.13 -0.07 4.86 -52.48 -0.26 -0.33 16 32 H 0.07 -0.20 7.83 -51.93 -0.41 -0.60 16 33 H 0.38 -1.69 8.74 45.56 0.40 -1.29 16 34 H 0.39 -1.38 9.06 45.56 0.41 -0.97 16 35 H 0.10 0.08 4.25 -51.93 -0.22 -0.14 16 36 H 0.08 -0.12 7.19 -51.93 -0.37 -0.49 16 37 H 0.08 -0.05 8.14 -51.93 -0.42 -0.47 16 38 H 0.07 0.04 5.42 -51.93 -0.28 -0.24 16 39 H 0.08 -0.11 7.93 -51.93 -0.41 -0.53 16 40 H 0.08 -0.06 7.95 -51.93 -0.41 -0.47 16 41 H 0.08 0.07 8.05 -51.93 -0.42 -0.35 16 42 H 0.07 0.02 8.05 -51.93 -0.42 -0.40 16 43 H 0.06 0.02 8.14 -51.93 -0.42 -0.40 16 44 H 0.06 0.06 8.14 -51.93 -0.42 -0.37 16 45 H 0.06 0.02 8.14 -51.93 -0.42 -0.40 16 46 H 0.06 0.09 8.14 -51.93 -0.42 -0.33 16 47 H 0.08 0.06 4.51 -51.93 -0.23 -0.18 16 48 H 0.09 0.25 3.55 -51.93 -0.18 0.06 16 49 H 0.09 0.24 7.54 -51.93 -0.39 -0.15 16 50 H 0.08 -0.04 8.00 -51.93 -0.42 -0.45 16 51 H 0.07 0.10 8.13 -51.93 -0.42 -0.33 16 52 H 0.09 -0.16 7.19 -51.92 -0.37 -0.54 16 53 H 0.16 0.18 4.88 -52.49 -0.26 -0.07 16 LS Contribution 381.50 15.07 5.75 5.75 Total: 0.00 -6.73 381.50 -9.59 -16.32 By element: Atomic # 1 Polarization: -2.70 SS G_CDS: -6.86 Total: -9.55 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -1.82 Total: -1.17 kcal Atomic # 7 Polarization: -0.53 SS G_CDS: -0.28 Total: -0.81 kcal Atomic # 8 Polarization: -2.87 SS G_CDS: -0.56 Total: -3.43 kcal Atomic # 14 Polarization: -1.28 SS G_CDS: -5.82 Total: -7.10 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -6.73 -9.59 -16.32 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608542_13422088.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.803 kcal (2) G-P(sol) polarization free energy of solvation -6.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds