Wall clock time and date at job start Sun Mar 7 2021 06:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38505 * 119.85093 * 2 1 4 4 C 1.38097 * 120.39325 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.95789 * 180.02562 * 4 3 2 6 6 O 1.42903 * 109.46952 * 104.97880 * 5 4 3 7 7 Si 1.86299 * 109.47067 * 344.97644 * 5 4 3 8 8 H 1.48499 * 109.46912 * 60.00252 * 7 5 4 9 9 H 1.48509 * 109.46951 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47356 * 300.00030 * 7 5 4 11 11 C 1.38662 * 120.08383 * 359.97438 * 4 3 2 12 12 O 1.35661 * 120.15164 * 180.02562 * 11 4 3 13 13 C 1.40175 * 119.70280 * 0.02562 * 11 4 3 14 14 C 1.47528 * 120.19514 * 179.97438 * 13 11 4 15 15 O 1.21598 * 120.00211 * 240.63073 * 14 13 11 16 16 N 1.34780 * 120.00135 * 60.63055 * 14 13 11 17 17 C 1.46114 * 122.74403 * 358.97859 * 16 14 13 18 18 C 1.46002 * 114.84680 * 78.72253 * 17 16 14 19 19 C 1.56489 * 109.11086 * 60.17256 * 18 17 16 20 20 Si 1.83355 * 108.28173 * 291.77880 * 19 18 17 21 21 C 1.88355 * 111.31929 * 210.69657 * 20 19 18 22 22 C 1.56250 * 99.09234 * 97.70041 * 21 20 19 23 23 C 1.53718 * 109.68771 * 39.75456 * 22 21 20 24 24 C 1.55536 * 111.36048 * 311.82987 * 23 22 21 25 25 C 1.87792 * 113.97932 * 86.47487 * 20 19 18 26 26 C 1.44737 * 122.74343 * 178.97996 * 16 14 13 27 27 C 1.37834 * 119.85269 * 180.26058 * 2 1 3 28 28 H 1.08992 * 109.47061 * 90.00009 * 1 2 3 29 29 H 1.08996 * 109.46821 * 209.99991 * 1 2 3 30 30 H 1.08996 * 109.46747 * 329.99750 * 1 2 3 31 31 H 1.08003 * 119.80453 * 0.02562 * 3 2 1 32 32 H 1.09005 * 109.47008 * 224.97415 * 5 4 3 33 33 H 0.96701 * 113.99418 * 179.97438 * 6 5 4 34 34 H 0.96696 * 114.00031 * 269.97938 * 12 11 4 35 35 H 1.08990 * 108.40637 * 317.33434 * 17 16 14 36 36 H 1.08998 * 108.40792 * 200.11183 * 17 16 14 37 37 H 1.08998 * 109.53906 * 180.08677 * 18 17 16 38 38 H 1.08997 * 109.54098 * 300.26582 * 18 17 16 39 39 H 1.09001 * 109.70561 * 51.40252 * 19 18 17 40 40 H 1.09001 * 109.70210 * 172.01305 * 19 18 17 41 41 H 1.08998 * 111.47657 * 215.16879 * 21 20 19 42 42 H 1.09001 * 111.47249 * 340.23535 * 21 20 19 43 43 H 1.09002 * 109.43602 * 279.68534 * 22 21 20 44 44 H 1.08993 * 109.39302 * 159.79758 * 22 21 20 45 45 H 1.08993 * 109.11111 * 191.32789 * 23 22 21 46 46 H 1.08996 * 109.02619 * 72.27237 * 23 22 21 47 47 H 1.08997 * 111.10861 * 270.21930 * 24 23 22 48 48 H 1.09001 * 111.14282 * 146.11208 * 24 23 22 49 49 H 1.08996 * 110.13101 * 201.87675 * 25 20 19 50 50 H 1.08997 * 110.13169 * 80.13057 * 25 20 19 51 51 H 1.08995 * 110.01566 * 50.51254 * 26 16 14 52 52 H 1.09007 * 110.01122 * 171.84308 * 26 16 14 53 53 H 1.08000 * 120.04071 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.2013 0.0000 4 6 3.5773 1.2144 -0.0005 5 6 4.3175 2.5271 0.0001 6 8 4.8553 2.7701 1.3015 7 14 3.1446 3.9015 -0.4539 8 1 2.0392 3.9561 0.5363 9 1 3.8741 5.1950 -0.4539 10 1 2.5857 3.6490 -1.8063 11 6 4.2837 0.0212 -0.0005 12 8 5.6403 0.0324 -0.0005 13 6 3.5898 -1.1968 -0.0005 14 6 4.3304 -2.4727 -0.0011 15 8 4.1887 -3.2576 -0.9189 16 7 5.1642 -2.7684 1.0157 17 6 5.3963 -1.8607 2.1370 18 6 4.3456 -1.8568 3.1507 19 6 4.2099 -3.2946 3.7535 20 14 3.5393 -4.4018 2.4549 21 6 2.5002 -5.7834 3.2026 22 6 1.0812 -5.1598 3.0048 23 6 1.0094 -4.4588 1.6387 24 6 2.2391 -3.5339 1.4112 25 6 4.8503 -5.1465 1.3353 26 6 5.9030 -4.0110 1.0862 27 6 2.1931 -1.1954 -0.0054 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6508 2.1334 0.0004 32 1 5.1289 2.4870 -0.7267 33 1 5.3463 3.5999 1.3755 34 1 6.0336 0.0353 -0.8839 35 1 5.5001 -0.8491 1.7450 36 1 6.3354 -2.1381 2.6157 37 1 4.6045 -1.1528 3.9415 38 1 3.4004 -1.5619 2.6950 39 1 5.1887 -3.6537 4.0715 40 1 3.5310 -3.2731 4.6060 41 1 2.6092 -6.7123 2.6428 42 1 2.7288 -5.9279 4.2585 43 1 0.8907 -4.4339 3.7954 44 1 0.3301 -5.9484 3.0478 45 1 0.0995 -3.8606 1.5919 46 1 0.9806 -5.2137 0.8530 47 1 2.0466 -2.5269 1.7812 48 1 2.5277 -3.5149 0.3603 49 1 4.4041 -5.4580 0.3909 50 1 5.3242 -5.9964 1.8263 51 1 6.4268 -4.1874 0.1468 52 1 6.6164 -3.9746 1.9096 53 1 1.6514 -2.1297 -0.0101 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608542_13422088.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:34:36 Heat of formation + Delta-G solvation = -92.891978 kcal Electronic energy + Delta-G solvation = -34222.754235 eV Core-core repulsion = 30183.881032 eV Total energy + Delta-G solvation = -4038.873202 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.182 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.21529 -40.39527 -38.28295 -37.77801 -37.56058 -36.27489 -34.10145 -33.24395 -33.03452 -30.76200 -29.85013 -27.59729 -27.22338 -26.77940 -25.78808 -24.76575 -23.34049 -22.65391 -21.85082 -21.05261 -20.13149 -19.33464 -18.45009 -18.32763 -17.65776 -17.25913 -16.75016 -16.43443 -16.11164 -15.90658 -15.73971 -15.60067 -15.25307 -14.95760 -14.93968 -14.67353 -14.58855 -14.42813 -14.39815 -14.09701 -13.79225 -13.56007 -13.48257 -13.06609 -13.03956 -12.88780 -12.75575 -12.59069 -12.48091 -12.32119 -12.24718 -12.12491 -12.01148 -11.89897 -11.74185 -11.66283 -11.51958 -11.31857 -10.99215 -10.54958 -10.35706 -10.24661 -10.16936 -10.01184 -9.63560 -9.48971 -0.17055 0.08335 1.14243 1.42144 1.46622 1.50050 1.71963 1.80334 1.89209 1.95416 2.04963 2.40904 2.67708 3.03846 3.32850 3.40393 3.76315 3.91149 3.91783 4.07157 4.09186 4.09493 4.15320 4.19181 4.22403 4.33095 4.35323 4.39774 4.49319 4.54867 4.57387 4.61628 4.65867 4.67312 4.78066 4.82382 4.84897 4.92103 4.98194 5.03172 5.05553 5.08389 5.09829 5.12259 5.15697 5.19966 5.27084 5.29811 5.33462 5.41391 5.42627 5.45522 5.49248 5.62935 5.69611 6.35006 6.64989 6.85624 7.03286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.096 4.096 3 C -0.099 4.099 4 C -0.111 4.111 5 C -0.069 4.069 6 O -0.554 6.554 7 Si 0.969 3.031 8 H -0.262 1.262 9 H -0.254 1.254 10 H -0.260 1.260 11 C 0.160 3.840 12 O -0.484 6.484 13 C -0.162 4.162 14 C 0.587 3.413 15 O -0.567 6.567 16 N -0.590 5.590 17 C 0.084 3.916 18 C -0.128 4.128 19 C -0.404 4.404 20 Si 1.024 2.976 21 C -0.418 4.418 22 C -0.121 4.121 23 C -0.115 4.115 24 C -0.444 4.444 25 C -0.431 4.431 26 C 0.112 3.888 27 C -0.076 4.076 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.140 0.860 32 H 0.092 0.908 33 H 0.396 0.604 34 H 0.404 0.596 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.059 0.941 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.048 0.952 47 H 0.084 0.916 48 H 0.077 0.923 49 H 0.059 0.941 50 H 0.093 0.907 51 H 0.060 0.940 52 H 0.119 0.881 53 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.729 4.517 2.749 5.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.096 4.096 3 C -0.117 4.117 4 C -0.112 4.112 5 C -0.180 4.180 6 O -0.363 6.363 7 Si 0.793 3.207 8 H -0.187 1.187 9 H -0.178 1.178 10 H -0.184 1.184 11 C 0.114 3.886 12 O -0.298 6.298 13 C -0.165 4.165 14 C 0.378 3.622 15 O -0.447 6.447 16 N -0.321 5.321 17 C -0.038 4.038 18 C -0.167 4.167 19 C -0.492 4.492 20 Si 1.214 2.786 21 C -0.503 4.503 22 C -0.159 4.159 23 C -0.152 4.152 24 C -0.527 4.527 25 C -0.517 4.517 26 C -0.010 4.010 27 C -0.094 4.094 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.157 0.843 32 H 0.110 0.890 33 H 0.246 0.754 34 H 0.264 0.736 35 H 0.110 0.890 36 H 0.119 0.881 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.067 0.933 47 H 0.102 0.898 48 H 0.095 0.905 49 H 0.078 0.922 50 H 0.112 0.888 51 H 0.079 0.921 52 H 0.137 0.863 53 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.821 4.238 2.733 5.109 hybrid contribution 0.284 -0.146 -0.867 0.924 sum 1.105 4.092 1.866 4.631 Atomic orbital electron populations 1.20900 0.88934 1.04106 1.03593 1.20013 0.97728 0.91833 1.00002 1.21280 0.93212 0.98920 0.98312 1.19740 0.93508 0.94214 1.03742 1.24552 1.03775 0.99993 0.89635 1.86493 1.74731 1.46496 1.28565 0.85438 0.78647 0.76921 0.79659 1.18662 1.17774 1.18401 1.18075 0.83516 0.89746 0.97292 1.84716 1.14534 1.95979 1.34541 1.20214 0.94843 0.92727 1.08724 1.17872 0.77998 0.85427 0.80936 1.90816 1.65806 1.51236 1.36836 1.47517 1.43048 1.20089 1.21483 1.20600 1.00229 0.95936 0.87025 1.20951 0.99666 0.97485 0.98548 1.26315 1.07975 1.04256 1.10677 0.79359 0.65916 0.66878 0.66449 1.26839 1.06247 1.10556 1.06643 1.21993 0.97388 0.99444 0.97061 1.21764 0.98451 0.97946 0.97072 1.27701 1.11520 1.04560 1.08936 1.27589 1.10500 1.03805 1.09796 1.21870 0.93935 0.81975 1.03207 1.21731 0.91914 0.99717 0.96046 0.89973 0.90546 0.90127 0.84298 0.89030 0.75406 0.73565 0.88965 0.88064 0.89007 0.92255 0.88722 0.89539 0.91225 0.89830 0.91198 0.92183 0.91738 0.93264 0.89751 0.90451 0.92181 0.88836 0.92107 0.86261 0.83257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.25 10.00 71.24 0.71 0.97 16 2 C -0.10 -0.20 5.87 -19.90 -0.12 -0.32 16 3 C -0.10 -0.17 8.30 22.30 0.19 0.01 16 4 C -0.11 -0.20 5.30 -19.80 -0.10 -0.30 16 5 C -0.07 0.17 2.37 71.24 0.17 0.34 16 6 O -0.55 0.85 12.86 -148.98 -1.92 -1.07 16 7 Si 0.97 -2.63 25.49 68.60 1.75 -0.88 16 8 H -0.26 0.07 6.73 99.48 0.67 0.74 16 9 H -0.25 0.72 7.11 99.48 0.71 1.43 16 10 H -0.26 0.21 7.11 99.48 0.71 0.92 16 11 C 0.16 0.42 5.61 22.84 0.13 0.55 16 12 O -0.48 0.29 9.98 -89.77 -0.90 -0.60 16 13 C -0.16 -0.84 4.12 -20.01 -0.08 -0.93 16 14 C 0.59 4.30 3.44 86.69 0.30 4.60 16 15 O -0.57 -8.40 15.36 -4.02 -0.06 -8.46 16 16 N -0.59 -1.28 1.59 -835.72 -1.33 -2.61 16 17 C 0.08 -0.09 4.47 84.30 0.38 0.28 16 18 C -0.13 0.20 5.63 29.66 0.17 0.36 16 19 C -0.40 1.24 4.83 73.20 0.35 1.59 16 20 Si 1.02 -0.14 8.75 68.60 0.60 0.46 16 21 C -0.42 -0.60 5.95 73.11 0.43 -0.17 16 22 C -0.12 -0.28 5.96 31.97 0.19 -0.08 16 23 C -0.11 -0.40 6.09 31.71 0.19 -0.21 16 24 C -0.44 -1.62 2.43 72.86 0.18 -1.44 16 25 C -0.43 -0.99 5.06 73.32 0.37 -0.62 16 26 C 0.11 0.10 5.81 88.05 0.51 0.61 16 27 C -0.08 -0.34 7.14 22.52 0.16 -0.18 16 28 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 29 H 0.08 -0.22 8.08 -2.39 -0.02 -0.24 16 30 H 0.08 -0.33 8.08 -2.39 -0.02 -0.35 16 31 H 0.14 -0.13 4.86 -2.91 -0.01 -0.14 16 32 H 0.09 -0.59 7.83 -2.38 -0.02 -0.61 16 33 H 0.40 -3.98 8.74 -74.06 -0.65 -4.63 16 34 H 0.40 -2.88 9.06 -74.06 -0.67 -3.55 16 35 H 0.09 0.10 4.25 -2.39 -0.01 0.09 16 36 H 0.10 -0.52 7.19 -2.39 -0.02 -0.54 16 37 H 0.09 -0.26 8.14 -2.39 -0.02 -0.28 16 38 H 0.06 0.06 5.42 -2.39 -0.01 0.05 16 39 H 0.09 -0.54 7.93 -2.39 -0.02 -0.56 16 40 H 0.09 -0.31 7.95 -2.39 -0.02 -0.32 16 41 H 0.07 0.19 8.05 -2.39 -0.02 0.17 16 42 H 0.08 -0.03 8.05 -2.39 -0.02 -0.05 16 43 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 44 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 45 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 46 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 47 H 0.08 0.23 4.51 -2.39 -0.01 0.22 16 48 H 0.08 0.61 3.55 -2.39 -0.01 0.60 16 49 H 0.06 0.49 7.54 -2.39 -0.02 0.47 16 50 H 0.09 -0.08 8.00 -2.39 -0.02 -0.10 16 51 H 0.06 0.23 8.13 -2.39 -0.02 0.21 16 52 H 0.12 -0.64 7.19 -2.38 -0.02 -0.66 16 53 H 0.15 0.72 4.88 -2.91 -0.01 0.71 16 Total: 0.00 -16.88 381.50 2.62 -14.26 By element: Atomic # 1 Polarization: -6.53 SS G_CDS: 0.35 Total: -6.18 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: 4.13 Total: 5.07 kcal Atomic # 7 Polarization: -1.28 SS G_CDS: -1.33 Total: -2.61 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -2.87 Total: -10.13 kcal Atomic # 14 Polarization: -2.77 SS G_CDS: 2.35 Total: -0.42 kcal Total: -16.88 2.62 -14.26 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608542_13422088.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.628 kcal (2) G-P(sol) polarization free energy of solvation -16.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds