Wall clock time and date at job start Sun Mar 7 2021 06:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86299 * 109.47204 * 2 1 4 4 H 1.48504 * 109.47002 * 59.99738 * 3 2 1 5 5 H 1.48494 * 109.47681 * 179.97438 * 3 2 1 6 6 H 1.48499 * 109.46987 * 300.00320 * 3 2 1 7 7 C 1.50703 * 109.47189 * 240.00133 * 2 1 3 8 8 C 1.34177 * 125.43933 * 299.71938 * 7 2 1 9 9 C 1.47014 * 105.95455 * 179.86930 * 8 7 2 10 10 C 1.47384 * 127.19101 * 180.15476 * 9 8 7 11 11 O 1.21614 * 119.99921 * 173.13083 * 10 9 8 12 12 N 1.34777 * 120.00039 * 353.11962 * 10 9 8 13 13 C 1.46091 * 122.76028 * 3.52939 * 12 10 9 14 14 C 1.46006 * 114.87618 * 78.53326 * 13 12 10 15 15 C 1.56512 * 108.97502 * 60.18129 * 14 13 12 16 16 Si 1.83373 * 108.24116 * 291.77222 * 15 14 13 17 17 C 1.88358 * 111.35512 * 322.39654 * 16 15 14 18 18 C 1.56245 * 99.09316 * 221.45671 * 17 16 15 19 19 C 1.53719 * 109.68107 * 39.76797 * 18 17 16 20 20 C 1.55531 * 111.35763 * 311.79683 * 19 18 17 21 21 C 1.87776 * 113.96395 * 86.63237 * 16 15 14 22 22 C 1.44789 * 122.76383 * 183.22843 * 12 10 9 23 23 C 1.36411 * 105.61728 * 0.38407 * 9 8 7 24 24 O 1.33652 * 108.39653 * 359.76605 * 23 9 8 25 25 H 0.96696 * 114.00188 * 59.99902 * 1 2 3 26 26 H 1.08996 * 109.47320 * 120.00230 * 2 1 3 27 27 H 1.08002 * 127.01585 * 359.97438 * 8 7 2 28 28 H 1.09005 * 108.39987 * 199.93209 * 13 12 10 29 29 H 1.09002 * 108.40013 * 317.30038 * 13 12 10 30 30 H 1.09003 * 109.54716 * 180.02562 * 14 13 12 31 31 H 1.08997 * 109.55454 * 300.22632 * 14 13 12 32 32 H 1.08998 * 109.71190 * 51.46021 * 15 14 13 33 33 H 1.09006 * 109.70865 * 172.04296 * 15 14 13 34 34 H 1.09000 * 111.47389 * 338.93245 * 17 16 15 35 35 H 1.09003 * 111.47069 * 103.98354 * 17 16 15 36 36 H 1.08999 * 109.43882 * 279.69917 * 18 17 16 37 37 H 1.09001 * 109.39937 * 159.80969 * 18 17 16 38 38 H 1.09003 * 109.11109 * 191.29666 * 19 18 17 39 39 H 1.08995 * 109.02705 * 72.24350 * 19 18 17 40 40 H 1.09003 * 111.10917 * 270.25880 * 20 19 18 41 41 H 1.09001 * 111.15104 * 146.14510 * 20 19 18 42 42 H 1.08998 * 110.13654 * 80.06717 * 21 16 15 43 43 H 1.08997 * 110.13501 * 201.82053 * 21 16 15 44 44 H 1.09002 * 110.03394 * 50.61342 * 22 12 10 45 45 H 1.08993 * 110.03722 * 172.10463 * 22 12 10 46 46 H 1.08001 * 125.80283 * 179.76609 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 1 1.5549 2.4565 1.2125 5 1 3.5349 1.7566 0.0006 6 1 1.5549 2.4565 -1.2125 7 6 1.9313 -0.7104 -1.2305 8 6 1.6797 -1.9897 -1.5475 9 6 2.3682 -2.2327 -2.8235 10 6 2.3967 -3.4879 -3.5955 11 8 2.9047 -3.5109 -4.7002 12 7 1.8600 -4.6102 -3.0771 13 6 1.1691 -4.6347 -1.7901 14 6 -0.1993 -4.1262 -1.8178 15 6 -1.0462 -4.9979 -2.8039 16 14 -0.4435 -4.6868 -4.5076 17 6 0.0207 -2.8777 -4.7512 18 6 -0.5764 -2.6596 -6.1785 19 6 -1.9258 -3.3872 -6.2919 20 6 -1.8265 -4.8492 -5.7705 21 6 1.0015 -5.7730 -5.0156 22 6 1.9150 -5.8896 -3.7528 23 6 2.9796 -1.0553 -3.1410 24 8 2.7065 -0.1661 -2.1813 25 1 -0.3933 0.4417 -0.7650 26 1 1.7923 -0.5138 0.8899 27 1 1.0902 -2.6959 -0.9817 28 1 1.1467 -5.6637 -1.4311 29 1 1.7416 -4.0369 -1.0809 30 1 -0.6299 -4.1836 -0.8181 31 1 -0.1965 -3.0897 -2.1549 32 1 -0.9257 -6.0530 -2.5582 33 1 -2.0978 -4.7209 -2.7290 34 1 -0.4646 -2.2384 -4.0137 35 1 1.1018 -2.7389 -4.7455 36 1 0.1129 -3.0553 -6.9244 37 1 -0.7237 -1.5934 -6.3503 38 1 -2.2370 -3.4012 -7.3365 39 1 -2.6702 -2.8489 -5.7053 40 1 -1.5481 -5.5337 -6.5718 41 1 -2.7568 -5.1615 -5.2961 42 1 0.6438 -6.7588 -5.3126 43 1 1.5498 -5.3088 -5.8353 44 1 2.9385 -6.1067 -4.0585 45 1 1.5459 -6.6758 -3.0944 46 1 3.5819 -0.8727 -4.0187 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608542_13456056.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:44:18 Heat of formation + Delta-G solvation = -52.817832 kcal Electronic energy + Delta-G solvation = -27781.095501 eV Core-core repulsion = 24183.261422 eV Total energy + Delta-G solvation = -3597.834079 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.151 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.81483 -41.33463 -38.21038 -37.95009 -36.09649 -34.77863 -33.56546 -31.84749 -30.82150 -29.62695 -27.67202 -26.65318 -25.77897 -24.55778 -23.45855 -22.83917 -21.74642 -20.96661 -19.96427 -18.87033 -18.14222 -17.64441 -17.51148 -17.12537 -16.54601 -16.32898 -15.83443 -15.80070 -15.65428 -15.57742 -14.96851 -14.84198 -14.69041 -14.55084 -14.02473 -13.83498 -13.60215 -13.50589 -13.13245 -12.94447 -12.86785 -12.58852 -12.43292 -12.32681 -12.24845 -12.10539 -11.93285 -11.82536 -11.62039 -11.25468 -11.03397 -10.78267 -10.66627 -10.54135 -10.33758 -10.16099 -9.84630 -9.57649 0.31645 0.81196 0.97938 1.36555 1.40899 1.72533 1.76323 1.77856 1.86528 1.93174 2.03519 2.31848 2.71857 3.12694 3.35340 3.55237 3.64110 3.86970 4.01413 4.14243 4.17513 4.21437 4.24355 4.29395 4.31044 4.36926 4.42727 4.46477 4.51183 4.71543 4.73804 4.78689 4.81167 4.84061 4.88495 4.94027 5.06510 5.13103 5.17302 5.19078 5.24080 5.26554 5.42433 5.43028 5.50361 5.59853 5.68854 5.86352 6.28639 6.37422 7.15852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.528 6.528 2 C -0.041 4.041 3 Si 0.954 3.046 4 H -0.245 1.245 5 H -0.246 1.246 6 H -0.248 1.248 7 C -0.058 4.058 8 C -0.168 4.168 9 C -0.243 4.243 10 C 0.611 3.389 11 O -0.530 6.530 12 N -0.606 5.606 13 C 0.083 3.917 14 C -0.145 4.145 15 C -0.407 4.407 16 Si 0.985 3.015 17 C -0.421 4.421 18 C -0.116 4.116 19 C -0.115 4.115 20 C -0.409 4.409 21 C -0.421 4.421 22 C 0.120 3.880 23 C 0.063 3.937 24 O -0.172 6.172 25 H 0.382 0.618 26 H 0.137 0.863 27 H 0.181 0.819 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.172 -0.585 3.929 4.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.334 6.334 2 C -0.151 4.151 3 Si 0.774 3.226 4 H -0.168 1.168 5 H -0.169 1.169 6 H -0.171 1.171 7 C -0.107 4.107 8 C -0.187 4.187 9 C -0.247 4.247 10 C 0.404 3.596 11 O -0.409 6.409 12 N -0.340 5.340 13 C -0.039 4.039 14 C -0.183 4.183 15 C -0.494 4.494 16 Si 1.178 2.822 17 C -0.507 4.507 18 C -0.154 4.154 19 C -0.153 4.153 20 C -0.495 4.495 21 C -0.508 4.508 22 C -0.002 4.002 23 C -0.008 4.008 24 O -0.068 6.068 25 H 0.230 0.770 26 H 0.154 0.846 27 H 0.198 0.802 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.115 0.885 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.108 0.892 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -0.381 0.202 3.978 4.002 hybrid contribution -0.418 -0.420 -0.811 1.004 sum -0.799 -0.218 3.168 3.274 Atomic orbital electron populations 1.86565 1.16094 1.81617 1.49088 1.24350 0.85156 1.11835 0.93758 0.85546 0.81143 0.73943 0.81922 1.16848 1.16945 1.17138 1.22835 0.99633 0.94466 0.93737 1.23511 1.02868 0.96143 0.96168 1.21379 1.08405 0.95881 0.99083 1.16765 0.76420 0.81844 0.84605 1.90847 1.45878 1.84934 1.19210 1.47399 1.55613 1.08946 1.22027 1.20642 0.93986 1.03890 0.85394 1.21248 0.94666 1.01158 1.01195 1.26375 1.04414 1.02782 1.15785 0.79837 0.66880 0.68724 0.66734 1.27479 1.05343 1.18754 0.99075 1.21909 0.96049 1.00329 0.97074 1.21788 0.97584 0.94703 1.01208 1.26577 1.13004 0.98145 1.11772 1.27370 1.11783 1.09825 1.01825 1.21606 1.01045 0.83717 0.93859 1.24449 0.98158 0.86295 0.91850 1.83727 1.54634 1.40346 1.28091 0.77044 0.84567 0.80192 0.89621 0.89720 0.89481 0.89842 0.90370 0.90021 0.91129 0.88509 0.92041 0.92134 0.92246 0.92300 0.90716 0.90753 0.90208 0.89245 0.90661 0.89203 0.76369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 1.02 12.87 -35.23 -0.45 0.56 16 2 C -0.04 0.09 2.97 36.01 0.11 0.20 16 3 Si 0.95 -1.36 27.37 -169.99 -4.65 -6.01 16 4 H -0.25 0.13 7.11 56.52 0.40 0.53 16 5 H -0.25 0.04 7.11 56.52 0.40 0.44 16 6 H -0.25 0.09 7.11 56.52 0.40 0.49 16 7 C -0.06 0.04 6.20 -35.74 -0.22 -0.18 16 8 C -0.17 0.11 7.50 -37.46 -0.28 -0.17 16 9 C -0.24 -0.22 5.19 -103.28 -0.54 -0.76 16 10 C 0.61 1.33 4.13 -12.54 -0.05 1.27 16 11 O -0.53 -2.73 14.96 5.27 0.08 -2.65 16 12 N -0.61 0.05 1.63 -178.52 -0.29 -0.24 16 13 C 0.08 -0.20 4.41 -7.58 -0.03 -0.23 16 14 C -0.14 0.35 4.35 -28.16 -0.12 0.23 16 15 C -0.41 0.75 4.83 39.05 0.19 0.94 16 16 Si 0.99 -0.48 8.77 -169.99 -1.49 -1.97 16 17 C -0.42 -0.63 4.58 38.90 0.18 -0.45 16 18 C -0.12 -0.24 5.96 -24.62 -0.15 -0.38 16 19 C -0.12 -0.17 6.09 -25.01 -0.15 -0.32 16 20 C -0.41 -0.28 5.84 38.50 0.22 -0.06 16 21 C -0.42 -0.14 5.00 38.92 0.19 0.05 16 22 C 0.12 -0.05 5.81 -3.19 -0.02 -0.07 16 23 C 0.06 0.02 11.91 30.07 0.36 0.38 16 24 O -0.17 -0.06 8.89 7.66 0.07 0.01 16 25 H 0.38 -1.78 8.70 45.56 0.40 -1.38 16 26 H 0.14 -0.52 7.96 -51.93 -0.41 -0.93 16 27 H 0.18 -0.42 3.73 -52.49 -0.20 -0.61 16 28 H 0.09 -0.33 7.19 -51.93 -0.37 -0.71 16 29 H 0.08 -0.24 5.11 -51.93 -0.27 -0.51 16 30 H 0.09 -0.31 8.14 -51.93 -0.42 -0.73 16 31 H 0.08 -0.14 4.30 -51.93 -0.22 -0.36 16 32 H 0.08 -0.20 7.93 -51.93 -0.41 -0.62 16 33 H 0.08 -0.14 7.95 -51.93 -0.41 -0.55 16 34 H 0.07 0.08 7.12 -51.93 -0.37 -0.29 16 35 H 0.10 0.27 3.05 -51.93 -0.16 0.11 16 36 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 37 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 38 H 0.06 0.09 8.14 -51.93 -0.42 -0.33 16 39 H 0.06 0.06 8.14 -51.93 -0.42 -0.36 16 40 H 0.07 0.06 8.03 -51.93 -0.42 -0.35 16 41 H 0.07 0.01 8.03 -51.93 -0.42 -0.40 16 42 H 0.08 -0.06 8.00 -51.93 -0.42 -0.48 16 43 H 0.09 0.23 7.42 -51.93 -0.39 -0.15 16 44 H 0.08 0.05 8.14 -51.93 -0.42 -0.38 16 45 H 0.09 -0.26 7.19 -51.93 -0.37 -0.64 16 46 H 0.22 -0.37 8.06 -52.49 -0.42 -0.79 16 LS Contribution 339.17 15.07 5.11 5.11 Total: 0.00 -6.15 339.17 -8.13 -14.28 By element: Atomic # 1 Polarization: -3.36 SS G_CDS: -6.19 Total: -9.55 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -0.31 Total: 0.45 kcal Atomic # 7 Polarization: 0.05 SS G_CDS: -0.29 Total: -0.24 kcal Atomic # 8 Polarization: -1.77 SS G_CDS: -0.31 Total: -2.08 kcal Atomic # 14 Polarization: -1.84 SS G_CDS: -6.14 Total: -7.98 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -6.15 -8.13 -14.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608542_13456056.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.533 kcal (2) G-P(sol) polarization free energy of solvation -6.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds