Wall clock time and date at job start Sun Mar 7 2021 06:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86299 * 109.47204 * 2 1 4 4 H 1.48504 * 109.47002 * 59.99738 * 3 2 1 5 5 H 1.48494 * 109.47681 * 179.97438 * 3 2 1 6 6 H 1.48499 * 109.46987 * 300.00320 * 3 2 1 7 7 C 1.50703 * 109.47189 * 240.00133 * 2 1 3 8 8 C 1.34177 * 125.43933 * 299.71938 * 7 2 1 9 9 C 1.47014 * 105.95455 * 179.86930 * 8 7 2 10 10 C 1.47384 * 127.19101 * 180.15476 * 9 8 7 11 11 O 1.21614 * 119.99921 * 173.13083 * 10 9 8 12 12 N 1.34777 * 120.00039 * 353.11962 * 10 9 8 13 13 C 1.46091 * 122.76028 * 3.52939 * 12 10 9 14 14 C 1.46006 * 114.87618 * 78.53326 * 13 12 10 15 15 C 1.56512 * 108.97502 * 60.18129 * 14 13 12 16 16 Si 1.83373 * 108.24116 * 291.77222 * 15 14 13 17 17 C 1.88358 * 111.35512 * 322.39654 * 16 15 14 18 18 C 1.56245 * 99.09316 * 221.45671 * 17 16 15 19 19 C 1.53719 * 109.68107 * 39.76797 * 18 17 16 20 20 C 1.55531 * 111.35763 * 311.79683 * 19 18 17 21 21 C 1.87776 * 113.96395 * 86.63237 * 16 15 14 22 22 C 1.44789 * 122.76383 * 183.22843 * 12 10 9 23 23 C 1.36411 * 105.61728 * 0.38407 * 9 8 7 24 24 O 1.33652 * 108.39653 * 359.76605 * 23 9 8 25 25 H 0.96696 * 114.00188 * 59.99902 * 1 2 3 26 26 H 1.08996 * 109.47320 * 120.00230 * 2 1 3 27 27 H 1.08002 * 127.01585 * 359.97438 * 8 7 2 28 28 H 1.09005 * 108.39987 * 199.93209 * 13 12 10 29 29 H 1.09002 * 108.40013 * 317.30038 * 13 12 10 30 30 H 1.09003 * 109.54716 * 180.02562 * 14 13 12 31 31 H 1.08997 * 109.55454 * 300.22632 * 14 13 12 32 32 H 1.08998 * 109.71190 * 51.46021 * 15 14 13 33 33 H 1.09006 * 109.70865 * 172.04296 * 15 14 13 34 34 H 1.09000 * 111.47389 * 338.93245 * 17 16 15 35 35 H 1.09003 * 111.47069 * 103.98354 * 17 16 15 36 36 H 1.08999 * 109.43882 * 279.69917 * 18 17 16 37 37 H 1.09001 * 109.39937 * 159.80969 * 18 17 16 38 38 H 1.09003 * 109.11109 * 191.29666 * 19 18 17 39 39 H 1.08995 * 109.02705 * 72.24350 * 19 18 17 40 40 H 1.09003 * 111.10917 * 270.25880 * 20 19 18 41 41 H 1.09001 * 111.15104 * 146.14510 * 20 19 18 42 42 H 1.08998 * 110.13654 * 80.06717 * 21 16 15 43 43 H 1.08997 * 110.13501 * 201.82053 * 21 16 15 44 44 H 1.09002 * 110.03394 * 50.61342 * 22 12 10 45 45 H 1.08993 * 110.03722 * 172.10463 * 22 12 10 46 46 H 1.08001 * 125.80283 * 179.76609 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 1 1.5549 2.4565 1.2125 5 1 3.5349 1.7566 0.0006 6 1 1.5549 2.4565 -1.2125 7 6 1.9313 -0.7104 -1.2305 8 6 1.6797 -1.9897 -1.5475 9 6 2.3682 -2.2327 -2.8235 10 6 2.3967 -3.4879 -3.5955 11 8 2.9047 -3.5109 -4.7002 12 7 1.8600 -4.6102 -3.0771 13 6 1.1691 -4.6347 -1.7901 14 6 -0.1993 -4.1262 -1.8178 15 6 -1.0462 -4.9979 -2.8039 16 14 -0.4435 -4.6868 -4.5076 17 6 0.0207 -2.8777 -4.7512 18 6 -0.5764 -2.6596 -6.1785 19 6 -1.9258 -3.3872 -6.2919 20 6 -1.8265 -4.8492 -5.7705 21 6 1.0015 -5.7730 -5.0156 22 6 1.9150 -5.8896 -3.7528 23 6 2.9796 -1.0553 -3.1410 24 8 2.7065 -0.1661 -2.1813 25 1 -0.3933 0.4417 -0.7650 26 1 1.7923 -0.5138 0.8899 27 1 1.0902 -2.6959 -0.9817 28 1 1.1467 -5.6637 -1.4311 29 1 1.7416 -4.0369 -1.0809 30 1 -0.6299 -4.1836 -0.8181 31 1 -0.1965 -3.0897 -2.1549 32 1 -0.9257 -6.0530 -2.5582 33 1 -2.0978 -4.7209 -2.7290 34 1 -0.4646 -2.2384 -4.0137 35 1 1.1018 -2.7389 -4.7455 36 1 0.1129 -3.0553 -6.9244 37 1 -0.7237 -1.5934 -6.3503 38 1 -2.2370 -3.4012 -7.3365 39 1 -2.6702 -2.8489 -5.7053 40 1 -1.5481 -5.5337 -6.5718 41 1 -2.7568 -5.1615 -5.2961 42 1 0.6438 -6.7588 -5.3126 43 1 1.5498 -5.3088 -5.8353 44 1 2.9385 -6.1067 -4.0585 45 1 1.5459 -6.6758 -3.0944 46 1 3.5819 -0.8727 -4.0187 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608542_13456056.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:44:17 Heat of formation + Delta-G solvation = -46.593903 kcal Electronic energy + Delta-G solvation = -27780.825611 eV Core-core repulsion = 24183.261422 eV Total energy + Delta-G solvation = -3597.564189 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.151 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.78682 -41.35286 -38.14622 -37.85707 -36.22439 -34.71156 -33.50436 -31.78085 -30.78526 -29.71745 -27.54731 -26.53223 -25.78086 -24.64301 -23.40354 -22.74289 -21.65656 -21.09178 -19.91287 -18.79829 -18.09392 -17.57513 -17.45576 -17.09207 -16.58497 -16.27561 -15.86643 -15.70001 -15.64392 -15.51299 -15.01859 -14.76333 -14.63774 -14.55845 -14.03895 -13.81918 -13.55186 -13.48918 -12.98826 -12.85299 -12.77546 -12.59345 -12.33706 -12.30140 -12.23179 -12.06685 -11.92985 -11.76298 -11.65233 -11.40676 -11.12808 -10.75148 -10.55920 -10.48405 -10.37333 -10.16528 -9.83189 -9.55232 0.28974 0.87740 1.10718 1.43308 1.47604 1.72936 1.77564 1.82907 1.93698 2.01703 2.10600 2.26092 2.72160 3.27850 3.49603 3.65689 3.87987 3.94409 4.06206 4.10468 4.17320 4.21940 4.26243 4.33464 4.41836 4.52184 4.56039 4.57253 4.63001 4.65125 4.66795 4.84772 4.92084 4.95725 4.98401 5.01593 5.03941 5.11576 5.13567 5.22982 5.29581 5.31934 5.36128 5.44548 5.46772 5.50532 5.69130 5.90644 6.38622 6.59034 7.09419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.027 4.027 3 Si 0.980 3.020 4 H -0.255 1.255 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.065 4.065 8 C -0.162 4.162 9 C -0.255 4.255 10 C 0.607 3.393 11 O -0.573 6.573 12 N -0.602 5.602 13 C 0.073 3.927 14 C -0.146 4.146 15 C -0.397 4.397 16 Si 1.029 2.971 17 C -0.438 4.438 18 C -0.120 4.120 19 C -0.118 4.118 20 C -0.423 4.423 21 C -0.433 4.433 22 C 0.116 3.884 23 C 0.052 3.948 24 O -0.180 6.180 25 H 0.392 0.608 26 H 0.159 0.841 27 H 0.201 0.799 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.045 0.955 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.126 0.874 46 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.536 -1.959 6.424 7.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.139 4.139 3 Si 0.804 3.196 4 H -0.179 1.179 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.113 4.113 8 C -0.180 4.180 9 C -0.259 4.259 10 C 0.400 3.600 11 O -0.456 6.456 12 N -0.334 5.334 13 C -0.048 4.048 14 C -0.183 4.183 15 C -0.487 4.487 16 Si 1.218 2.782 17 C -0.521 4.521 18 C -0.158 4.158 19 C -0.155 4.155 20 C -0.507 4.507 21 C -0.519 4.519 22 C -0.006 4.006 23 C -0.018 4.018 24 O -0.077 6.077 25 H 0.242 0.758 26 H 0.176 0.824 27 H 0.218 0.782 28 H 0.130 0.870 29 H 0.110 0.890 30 H 0.129 0.871 31 H 0.092 0.908 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.110 0.890 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.144 0.856 46 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -1.753 -1.154 6.460 6.793 hybrid contribution 0.031 0.078 -1.674 1.676 sum -1.722 -1.077 4.786 5.199 Atomic orbital electron populations 1.86544 1.15914 1.81752 1.49904 1.24308 0.85146 1.10580 0.93843 0.85176 0.79444 0.74639 0.80303 1.17863 1.19094 1.19213 1.23213 0.99391 0.94755 0.93903 1.23696 1.02563 0.96381 0.95372 1.21438 1.09100 0.95520 0.99878 1.16999 0.76051 0.82757 0.84163 1.90820 1.47974 1.85684 1.21080 1.47466 1.54867 1.08298 1.22752 1.20921 0.93946 1.05853 0.84090 1.21287 0.94411 1.00418 1.02213 1.26207 1.04701 1.04182 1.13574 0.79344 0.65113 0.65863 0.67836 1.27693 1.04388 1.21628 0.98388 1.21933 0.96338 0.99970 0.97517 1.21800 0.97066 0.95569 1.01100 1.26751 1.14455 0.97146 1.12370 1.27499 1.12354 1.10656 1.01394 1.21763 1.00137 0.84476 0.94273 1.24707 0.98449 0.86483 0.92197 1.83734 1.54988 1.40584 1.28368 0.75793 0.82354 0.78227 0.86960 0.88997 0.87120 0.90846 0.88413 0.89331 0.90868 0.89895 0.93645 0.92798 0.92879 0.91641 0.91313 0.89682 0.89029 0.92507 0.92409 0.85626 0.75689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 2.92 12.87 -148.98 -1.92 1.00 16 2 C -0.03 0.15 2.97 71.24 0.21 0.36 16 3 Si 0.98 -2.48 27.37 68.60 1.88 -0.60 16 4 H -0.25 0.26 7.11 99.48 0.71 0.96 16 5 H -0.27 -0.19 7.11 99.48 0.71 0.52 16 6 H -0.27 -0.12 7.11 99.48 0.71 0.59 16 7 C -0.06 0.11 6.20 24.76 0.15 0.26 16 8 C -0.16 0.35 7.50 23.65 0.18 0.53 16 9 C -0.25 -0.66 5.19 -18.99 -0.10 -0.76 16 10 C 0.61 3.38 4.13 86.65 0.36 3.73 16 11 O -0.57 -7.56 14.96 -4.08 -0.06 -7.62 16 12 N -0.60 0.38 1.63 -836.96 -1.36 -0.99 16 13 C 0.07 -0.54 4.41 84.31 0.37 -0.17 16 14 C -0.15 1.15 4.35 29.67 0.13 1.28 16 15 C -0.40 2.68 4.83 73.21 0.35 3.03 16 16 Si 1.03 -1.29 8.77 68.60 0.60 -0.69 16 17 C -0.44 -1.91 4.58 73.11 0.33 -1.58 16 18 C -0.12 -0.77 5.96 31.96 0.19 -0.58 16 19 C -0.12 -0.49 6.09 31.71 0.19 -0.30 16 20 C -0.42 -0.66 5.84 72.85 0.43 -0.24 16 21 C -0.43 -0.62 5.00 73.12 0.37 -0.26 16 22 C 0.12 -0.14 5.81 87.84 0.51 0.37 16 23 C 0.05 0.12 11.91 67.39 0.80 0.92 16 24 O -0.18 -0.29 8.89 4.48 0.04 -0.25 16 25 H 0.39 -4.06 8.70 -74.06 -0.64 -4.71 16 26 H 0.16 -1.56 7.96 -2.39 -0.02 -1.58 16 27 H 0.20 -1.40 3.73 -2.91 -0.01 -1.41 16 28 H 0.11 -1.36 7.19 -2.38 -0.02 -1.37 16 29 H 0.09 -0.77 5.11 -2.39 -0.01 -0.78 16 30 H 0.11 -1.28 8.14 -2.39 -0.02 -1.30 16 31 H 0.07 -0.40 4.30 -2.39 -0.01 -0.41 16 32 H 0.10 -0.95 7.93 -2.39 -0.02 -0.97 16 33 H 0.09 -0.62 7.95 -2.38 -0.02 -0.64 16 34 H 0.07 0.23 7.12 -2.39 -0.02 0.21 16 35 H 0.08 0.65 3.05 -2.39 -0.01 0.65 16 36 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 40 H 0.07 0.18 8.03 -2.39 -0.02 0.16 16 41 H 0.08 -0.05 8.03 -2.39 -0.02 -0.07 16 42 H 0.09 -0.15 8.00 -2.39 -0.02 -0.17 16 43 H 0.06 0.47 7.42 -2.39 -0.02 0.45 16 44 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 45 H 0.13 -1.07 7.19 -2.39 -0.02 -1.09 16 46 H 0.23 -0.17 8.06 -2.91 -0.02 -0.19 16 Total: 0.00 -17.21 339.17 4.77 -12.44 By element: Atomic # 1 Polarization: -11.03 SS G_CDS: 1.11 Total: -9.92 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 4.48 Total: 6.62 kcal Atomic # 7 Polarization: 0.38 SS G_CDS: -1.36 Total: -0.99 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -1.94 Total: -6.87 kcal Atomic # 14 Polarization: -3.77 SS G_CDS: 2.48 Total: -1.29 kcal Total: -17.21 4.77 -12.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608542_13456056.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.156 kcal (2) G-P(sol) polarization free energy of solvation -17.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds