Wall clock time and date at job start Sun Mar 7 2021 06:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42909 * 1 3 3 Si 1.86302 * 109.46803 * 2 1 4 4 H 1.48500 * 109.46973 * 300.00048 * 3 2 1 5 5 H 1.48507 * 109.47158 * 59.99963 * 3 2 1 6 6 H 1.48500 * 109.47109 * 179.97438 * 3 2 1 7 7 C 1.50695 * 109.47378 * 240.00314 * 2 1 3 8 8 C 1.38117 * 120.03298 * 105.27247 * 7 2 1 9 9 C 1.38289 * 120.05634 * 180.32191 * 8 7 2 10 10 C 1.38240 * 120.11528 * 359.68061 * 9 8 7 11 11 C 1.38170 * 120.05030 * 0.02562 * 10 9 8 12 12 C 1.38712 * 119.94941 * 0.02562 * 11 10 9 13 13 O 1.35890 * 120.05858 * 180.02562 * 12 11 10 14 14 C 1.42901 * 117.00190 * 359.97438 * 13 12 11 15 15 C 1.50704 * 109.47394 * 180.02562 * 14 13 12 16 16 O 1.21281 * 119.99781 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00142 * 180.02562 * 15 14 13 18 18 C 1.45346 * 116.88881 * 359.97438 * 17 15 14 19 19 C 1.52530 * 106.23425 * 80.70925 * 18 17 15 20 20 C 1.54296 * 107.57278 * 102.39313 * 19 18 17 21 21 Si 1.86119 * 108.76820 * 321.58119 * 20 19 18 22 22 C 1.88285 * 110.17662 * 83.80649 * 21 20 19 23 23 C 1.56268 * 99.06176 * 96.00920 * 22 21 20 24 24 C 1.53733 * 109.69413 * 39.73153 * 23 22 21 25 25 C 1.55556 * 111.35745 * 311.82196 * 24 23 22 26 26 C 1.84490 * 113.10844 * 318.97883 * 21 20 19 27 27 C 1.42490 * 116.89116 * 180.02562 * 17 15 14 28 28 H 0.96699 * 113.99594 * 60.00577 * 1 2 3 29 29 H 1.08998 * 109.46563 * 119.99600 * 2 1 3 30 30 H 1.07999 * 119.97274 * 0.02562 * 8 7 2 31 31 H 1.08004 * 119.94452 * 179.69844 * 9 8 7 32 32 H 1.08000 * 119.97934 * 180.02562 * 10 9 8 33 33 H 1.08010 * 120.02545 * 179.97438 * 11 10 9 34 34 H 1.09000 * 109.46995 * 59.99885 * 14 13 12 35 35 H 1.08999 * 109.47385 * 300.00199 * 14 13 12 36 36 H 1.09000 * 110.09643 * 199.88896 * 18 17 15 37 37 H 1.09005 * 110.09595 * 321.52897 * 18 17 15 38 38 H 1.08999 * 109.84179 * 221.94267 * 19 18 17 39 39 H 1.09000 * 109.83251 * 342.91281 * 19 18 17 40 40 H 1.08993 * 109.61260 * 201.78262 * 20 19 18 41 41 H 1.08999 * 109.68265 * 81.41609 * 20 19 18 42 42 H 1.08999 * 111.47231 * 213.46854 * 22 21 20 43 43 H 1.08994 * 111.47683 * 338.54476 * 22 21 20 44 44 H 1.09000 * 109.43966 * 279.65401 * 23 22 21 45 45 H 1.08999 * 109.39174 * 159.77307 * 23 22 21 46 46 H 1.08997 * 109.10537 * 191.32531 * 24 23 22 47 47 H 1.09002 * 109.02052 * 72.26607 * 24 23 22 48 48 H 1.08998 * 111.12034 * 270.24273 * 25 24 23 49 49 H 1.09004 * 111.14691 * 146.11539 * 25 24 23 50 50 H 1.09005 * 109.70891 * 325.26259 * 26 21 20 51 51 H 1.09004 * 109.70868 * 204.64482 * 26 21 20 52 52 H 1.09003 * 109.83398 * 3.55341 * 27 17 15 53 53 H 1.09000 * 109.83361 * 124.51179 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 1 1.5549 2.4565 -1.2125 5 1 1.5549 2.4566 1.2126 6 1 3.5350 1.7566 0.0006 7 6 1.9315 -0.7103 -1.2304 8 6 2.4589 0.0154 -2.2806 9 6 2.9139 -0.6355 -3.4127 10 6 2.8484 -2.0140 -3.4939 11 6 2.3272 -2.7449 -2.4435 12 6 1.8691 -2.0944 -1.3072 13 8 1.3566 -2.8111 -0.2726 14 6 1.3193 -4.2317 -0.4230 15 6 0.7231 -4.8523 0.8141 16 8 0.3658 -4.1476 1.7342 17 7 0.5880 -6.1906 0.8985 18 6 1.0387 -6.9700 -0.2425 19 6 2.5523 -7.0959 -0.1019 20 6 2.8544 -8.5115 0.4324 21 14 1.5558 -8.9686 1.6849 22 6 0.0301 -9.6521 0.8186 23 6 0.3429 -11.1786 0.9373 24 6 0.9486 -11.4775 2.3183 25 6 2.0920 -10.4807 2.6632 26 6 1.1084 -7.5735 2.8062 27 6 0.0159 -6.7063 2.0973 28 1 -0.3932 0.4416 -0.7651 29 1 1.7923 -0.5138 0.8900 30 1 2.5115 1.0923 -2.2196 31 1 3.3215 -0.0659 -4.2349 32 1 3.2047 -2.5200 -4.3789 33 1 2.2758 -3.8218 -2.5075 34 1 2.3319 -4.6084 -0.5671 35 1 0.7092 -4.4896 -1.2886 36 1 0.5778 -7.9577 -0.2270 37 1 0.7904 -6.4542 -1.1701 38 1 3.0269 -6.9576 -1.0734 39 1 2.9217 -6.3491 0.6009 40 1 3.8369 -8.5225 0.9041 41 1 2.8359 -9.2261 -0.3904 42 1 -0.8831 -9.3892 1.3524 43 1 -0.0138 -9.3335 -0.2228 44 1 1.0519 -11.4651 0.1605 45 1 -0.5787 -11.7474 0.8147 46 1 1.3468 -12.4921 2.3212 47 1 0.1667 -11.3990 3.0737 48 1 3.0555 -10.8525 2.3149 49 1 2.1189 -10.2677 3.7319 50 1 1.9902 -6.9641 3.0046 51 1 0.7144 -7.9669 3.7433 52 1 -0.2838 -5.8844 2.7474 53 1 -0.8496 -7.3242 1.8580 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608542_2989392.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:45:59 Heat of formation + Delta-G solvation = -87.147721 kcal Electronic energy + Delta-G solvation = -31726.663463 eV Core-core repulsion = 27688.039351 eV Total energy + Delta-G solvation = -4038.624113 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.182 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.94614 -41.04662 -38.68242 -37.82490 -37.46672 -36.20138 -34.16167 -32.77291 -32.02874 -30.99264 -29.87558 -28.92529 -26.98714 -26.66119 -25.08711 -24.35558 -23.09617 -22.57568 -22.54305 -21.07615 -20.21391 -19.58608 -18.21581 -18.19283 -17.51199 -17.41332 -16.97304 -16.48601 -16.31819 -15.88028 -15.76677 -15.74692 -15.65941 -15.12655 -15.06558 -14.99250 -14.76905 -14.57620 -14.40206 -14.29230 -13.84014 -13.64022 -13.49391 -13.24736 -13.00790 -12.89387 -12.86570 -12.59776 -12.52030 -12.35557 -12.21166 -12.07018 -11.97842 -11.88680 -11.83013 -11.65766 -11.60314 -11.34515 -10.90508 -10.50186 -10.34303 -10.30874 -10.22464 -9.96308 -9.69672 -9.20268 0.23995 0.42209 1.14582 1.37452 1.39952 1.50047 1.51494 1.70896 1.87079 1.89013 1.92272 2.49244 2.60352 2.71302 3.25482 3.56425 3.74692 3.80717 3.87926 3.93356 3.98410 4.01952 4.11573 4.13490 4.15644 4.18238 4.32080 4.32688 4.37962 4.39339 4.42232 4.54691 4.56364 4.65649 4.67980 4.69451 4.71664 4.75492 4.90157 4.99028 5.08818 5.10283 5.13842 5.21184 5.25437 5.29762 5.32192 5.37215 5.38562 5.45900 5.52087 5.52903 5.56446 5.64637 5.76416 6.10200 6.38114 6.75303 7.03596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.081 4.081 3 Si 0.993 3.007 4 H -0.234 1.234 5 H -0.281 1.281 6 H -0.254 1.254 7 C -0.169 4.169 8 C -0.097 4.097 9 C -0.155 4.155 10 C -0.074 4.074 11 C -0.211 4.211 12 C 0.130 3.870 13 O -0.312 6.312 14 C 0.034 3.966 15 C 0.499 3.501 16 O -0.569 6.569 17 N -0.588 5.588 18 C 0.052 3.948 19 C -0.136 4.136 20 C -0.408 4.408 21 Si 1.040 2.960 22 C -0.415 4.415 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.424 4.424 26 C -0.441 4.441 27 C 0.112 3.888 28 H 0.384 0.616 29 H 0.093 0.907 30 H 0.140 0.860 31 H 0.149 0.851 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.073 0.927 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.056 0.944 48 H 0.077 0.923 49 H 0.070 0.930 50 H 0.065 0.935 51 H 0.087 0.913 52 H 0.072 0.928 53 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.926 -4.791 -8.175 9.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.190 4.190 3 Si 0.815 3.185 4 H -0.157 1.157 5 H -0.206 1.206 6 H -0.177 1.177 7 C -0.170 4.170 8 C -0.115 4.115 9 C -0.173 4.173 10 C -0.091 4.091 11 C -0.229 4.229 12 C 0.085 3.915 13 O -0.224 6.224 14 C -0.043 4.043 15 C 0.287 3.713 16 O -0.447 6.447 17 N -0.321 5.321 18 C -0.068 4.068 19 C -0.175 4.175 20 C -0.495 4.495 21 Si 1.230 2.770 22 C -0.501 4.501 23 C -0.160 4.160 24 C -0.162 4.162 25 C -0.509 4.509 26 C -0.525 4.525 27 C -0.011 4.011 28 H 0.232 0.768 29 H 0.111 0.889 30 H 0.158 0.842 31 H 0.167 0.833 32 H 0.173 0.827 33 H 0.174 0.826 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.147 0.853 37 H 0.132 0.868 38 H 0.117 0.883 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.115 0.885 42 H 0.099 0.901 43 H 0.118 0.882 44 H 0.091 0.909 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.096 0.904 49 H 0.089 0.911 50 H 0.084 0.916 51 H 0.106 0.894 52 H 0.090 0.910 53 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.053 -3.848 -6.905 8.474 hybrid contribution -0.304 -0.568 0.265 0.697 sum 2.749 -4.416 -6.640 8.435 Atomic orbital electron populations 1.86566 1.17934 1.81978 1.49579 1.25019 0.84768 1.11382 0.97786 0.85146 0.79724 0.73368 0.80278 1.15664 1.20616 1.17740 1.19789 1.06752 0.91684 0.98775 1.21170 0.97060 1.00350 0.92884 1.21390 1.02118 0.95293 0.98540 1.21393 0.95428 0.94034 0.98290 1.21612 1.05521 1.01893 0.93903 1.19059 0.94015 0.91032 0.87410 1.86197 1.77998 1.18703 1.39548 1.22907 1.04265 0.79840 0.97315 1.20788 0.78479 0.83688 0.88338 1.90745 1.50367 1.62380 1.41233 1.46871 1.61801 1.05118 1.18305 1.22694 0.95735 1.00002 0.88344 1.22099 0.94915 0.97304 1.03145 1.26393 1.11692 1.00063 1.11324 0.79177 0.67651 0.63943 0.66183 1.27224 1.13684 1.01305 1.07849 1.22004 1.00888 0.96362 0.96781 1.21874 0.97364 0.99502 0.97448 1.26734 1.01215 1.15022 1.07903 1.27261 1.02196 1.12726 1.10357 1.21165 0.96030 0.98381 0.85571 0.76752 0.88867 0.84232 0.83317 0.82670 0.82601 0.86164 0.86038 0.85314 0.86834 0.88326 0.92198 0.90553 0.88455 0.90138 0.88154 0.90853 0.91923 0.92491 0.92469 0.90404 0.91118 0.91603 0.89406 0.90995 0.88784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -5.07 12.88 -148.98 -1.92 -6.98 16 2 C -0.08 -0.56 2.38 71.23 0.17 -0.39 16 3 Si 0.99 2.59 25.48 68.60 1.75 4.34 16 4 H -0.23 0.16 6.74 99.48 0.67 0.83 16 5 H -0.28 -1.92 7.11 99.48 0.71 -1.21 16 6 H -0.25 -0.75 7.11 99.48 0.71 -0.04 16 7 C -0.17 -0.90 5.27 -19.77 -0.10 -1.01 16 8 C -0.10 -0.11 8.66 22.25 0.19 0.09 16 9 C -0.16 0.30 10.04 22.28 0.22 0.53 16 10 C -0.07 0.24 10.04 22.25 0.22 0.47 16 11 C -0.21 0.30 9.04 22.37 0.20 0.50 16 12 C 0.13 0.69 6.66 22.51 0.15 0.84 16 13 O -0.31 -2.83 9.00 -73.28 -0.66 -3.49 16 14 C 0.03 0.01 3.70 71.24 0.26 0.28 16 15 C 0.50 3.17 7.11 87.66 0.62 3.80 16 16 O -0.57 -10.28 15.48 16.00 0.25 -10.03 16 17 N -0.59 0.43 2.22 -828.14 -1.84 -1.41 16 18 C 0.05 -0.46 5.20 86.44 0.45 -0.01 16 19 C -0.14 1.18 4.78 30.88 0.15 1.32 16 20 C -0.41 3.36 5.09 72.42 0.37 3.73 16 21 Si 1.04 -6.94 8.82 68.60 0.60 -6.34 16 22 C -0.42 2.89 5.11 73.12 0.37 3.27 16 23 C -0.12 0.55 5.96 31.98 0.19 0.74 16 24 C -0.12 0.25 6.09 31.72 0.19 0.45 16 25 C -0.42 1.21 5.84 72.86 0.43 1.63 16 26 C -0.44 0.56 5.07 73.19 0.37 0.93 16 27 C 0.11 0.13 6.03 88.32 0.53 0.67 16 28 H 0.38 0.26 8.70 -74.06 -0.64 -0.38 16 29 H 0.09 0.99 7.83 -2.39 -0.02 0.97 16 30 H 0.14 -0.28 4.89 -2.91 -0.01 -0.30 16 31 H 0.15 -0.98 8.06 -2.91 -0.02 -1.00 16 32 H 0.16 -1.40 8.06 -2.91 -0.02 -1.42 16 33 H 0.16 -1.25 6.30 -2.91 -0.02 -1.27 16 34 H 0.12 -0.67 6.11 -2.39 -0.01 -0.69 16 35 H 0.12 -0.76 6.75 -2.39 -0.02 -0.78 16 36 H 0.13 -1.46 2.77 -2.39 -0.01 -1.47 16 37 H 0.11 -1.54 6.47 -2.38 -0.02 -1.55 16 38 H 0.10 -1.24 8.14 -2.39 -0.02 -1.26 16 39 H 0.06 -0.29 7.00 -2.39 -0.02 -0.31 16 40 H 0.08 -0.53 7.97 -2.39 -0.02 -0.55 16 41 H 0.10 -1.03 7.97 -2.39 -0.02 -1.05 16 42 H 0.08 -0.49 7.22 -2.39 -0.02 -0.51 16 43 H 0.10 -1.04 6.11 -2.39 -0.01 -1.05 16 44 H 0.07 -0.45 8.14 -2.39 -0.02 -0.47 16 45 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 46 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 47 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 48 H 0.08 -0.24 8.03 -2.39 -0.02 -0.26 16 49 H 0.07 -0.11 8.03 -2.38 -0.02 -0.13 16 50 H 0.07 0.11 7.96 -2.38 -0.02 0.09 16 51 H 0.09 -0.13 7.96 -2.38 -0.02 -0.15 16 52 H 0.07 0.59 6.54 -2.39 -0.02 0.57 16 53 H 0.09 -0.29 6.83 -2.39 -0.02 -0.31 16 Total: 0.00 -24.38 395.16 4.18 -20.20 By element: Atomic # 1 Polarization: -15.12 SS G_CDS: 1.00 Total: -14.12 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: 5.00 Total: 17.83 kcal Atomic # 7 Polarization: 0.43 SS G_CDS: -1.84 Total: -1.41 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -2.33 Total: -20.50 kcal Atomic # 14 Polarization: -4.35 SS G_CDS: 2.35 Total: -2.00 kcal Total: -24.38 4.18 -20.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608542_2989392.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.950 kcal (2) G-P(sol) polarization free energy of solvation -24.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds