Wall clock time and date at job start Sun Mar 7 2021 06:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86302 * 109.46917 * 2 1 4 4 H 1.48498 * 109.46985 * 60.00169 * 3 2 1 5 5 H 1.48502 * 109.46917 * 180.02562 * 3 2 1 6 6 H 1.48495 * 109.47282 * 299.99887 * 3 2 1 7 7 C 1.50695 * 109.47375 * 120.00128 * 2 1 3 8 8 C 1.38121 * 119.97430 * 65.00197 * 7 2 1 9 9 C 1.38755 * 119.94685 * 179.97438 * 8 7 2 10 10 O 1.35898 * 120.05301 * 180.02562 * 9 8 7 11 11 C 1.42902 * 116.99730 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47419 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47460 * 179.97438 * 12 11 10 14 14 O 1.21281 * 119.99479 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99956 * 179.97438 * 13 12 11 16 16 C 1.46085 * 122.76445 * 0.02562 * 15 13 12 17 17 C 1.46009 * 114.87721 * 78.53379 * 16 15 13 18 18 C 1.56521 * 108.97468 * 60.18147 * 17 16 15 19 19 Si 1.83378 * 108.23908 * 291.77587 * 18 17 16 20 20 C 1.88357 * 111.35704 * 322.39617 * 19 18 17 21 21 C 1.56255 * 99.08991 * 221.45664 * 20 19 18 22 22 C 1.53723 * 109.68121 * 39.76773 * 21 20 19 23 23 C 1.55530 * 111.35740 * 311.79405 * 22 21 20 24 24 C 1.87777 * 113.96089 * 86.63116 * 19 18 17 25 25 C 1.44792 * 122.76004 * 179.70887 * 15 13 12 26 26 C 1.38705 * 119.88580 * 359.97438 * 9 8 7 27 27 C 1.38170 * 119.94752 * 0.02562 * 26 9 8 28 28 C 1.38239 * 120.05181 * 0.02562 * 27 26 9 29 29 H 0.96699 * 114.00289 * 59.99723 * 1 2 3 30 30 H 1.08999 * 109.46984 * 240.00092 * 2 1 3 31 31 H 1.08002 * 120.02567 * 0.24819 * 8 7 2 32 32 H 1.09000 * 109.47521 * 300.00502 * 11 10 9 33 33 H 1.09007 * 109.47162 * 60.00566 * 11 10 9 34 34 H 1.09000 * 109.47211 * 300.00725 * 12 11 10 35 35 H 1.09007 * 109.46464 * 60.00172 * 12 11 10 36 36 H 1.09002 * 108.40568 * 199.93189 * 16 15 13 37 37 H 1.09000 * 108.40330 * 317.30839 * 16 15 13 38 38 H 1.08998 * 109.56087 * 180.02562 * 17 16 15 39 39 H 1.09004 * 109.55445 * 300.23271 * 17 16 15 40 40 H 1.08996 * 109.70831 * 51.45826 * 18 17 16 41 41 H 1.08996 * 109.71045 * 172.04772 * 18 17 16 42 42 H 1.09004 * 111.46850 * 338.92594 * 20 19 18 43 43 H 1.08998 * 111.46837 * 103.98537 * 20 19 18 44 44 H 1.08993 * 109.43735 * 279.69821 * 21 20 19 45 45 H 1.09000 * 109.39256 * 159.80563 * 21 20 19 46 46 H 1.08997 * 109.10947 * 191.29438 * 22 21 20 47 47 H 1.08995 * 109.02838 * 72.23908 * 22 21 20 48 48 H 1.08994 * 111.11561 * 270.26075 * 23 22 21 49 49 H 1.09001 * 111.14807 * 146.14376 * 23 22 21 50 50 H 1.09006 * 110.13783 * 80.06814 * 24 19 18 51 51 H 1.09005 * 110.13559 * 201.81668 * 24 19 18 52 52 H 1.09000 * 110.03542 * 50.61912 * 25 15 13 53 53 H 1.09000 * 110.03857 * 172.10702 * 25 15 13 54 54 H 1.08005 * 120.02710 * 179.97438 * 26 9 8 55 55 H 1.07997 * 119.96738 * 180.02562 * 27 26 9 56 56 H 1.08000 * 119.94311 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 1 1.5549 2.4565 1.2125 5 1 3.5349 1.7565 -0.0006 6 1 1.5550 2.4565 -1.2125 7 6 1.9314 -0.7104 1.2304 8 6 1.6847 -2.0591 1.3976 9 6 2.1480 -2.7127 2.5304 10 8 1.9070 -4.0398 2.6969 11 6 2.4143 -4.6470 3.8869 12 6 2.0469 -6.1322 3.8982 13 6 2.5824 -6.7726 5.1529 14 8 3.1970 -6.1066 5.9588 15 7 2.3774 -8.0852 5.3797 16 6 1.6457 -8.9432 4.4509 17 6 2.4093 -9.3779 3.2848 18 6 3.6564 -10.1915 3.7675 19 14 4.8003 -9.0377 4.6179 20 6 4.8383 -7.3579 3.7667 21 6 6.3741 -7.0792 3.8390 22 6 7.1494 -8.3774 3.5617 23 6 6.5936 -9.5601 4.4050 24 6 4.4275 -8.8013 6.4430 25 6 2.8700 -8.7625 6.5608 26 6 2.8584 -2.0096 3.4921 27 6 3.1026 -0.6606 3.3203 28 6 2.6390 -0.0115 2.1912 29 1 -0.3934 0.4417 -0.7650 30 1 1.7923 -0.5138 -0.8900 31 1 1.1355 -2.6054 0.6450 32 1 3.4987 -4.5403 3.9154 33 1 1.9781 -4.1586 4.7583 34 1 0.9624 -6.2384 3.8699 35 1 2.4827 -6.6208 3.0267 36 1 1.3098 -9.8281 4.9916 37 1 0.7670 -8.4013 4.1013 38 1 1.7840 -10.0094 2.6538 39 1 2.7374 -8.5066 2.7180 40 1 3.3406 -10.9724 4.4592 41 1 4.1568 -10.6406 2.9097 42 1 4.4932 -7.4255 2.7350 43 1 4.2711 -6.6142 4.3264 44 1 6.6293 -6.7093 4.8320 45 1 6.6417 -6.3306 3.0932 46 1 8.2000 -8.2253 3.8092 47 1 7.0644 -8.6228 2.5032 48 1 7.0997 -9.6278 5.3679 49 1 6.6664 -10.5007 3.8589 50 1 4.8271 -9.6361 7.0189 51 1 4.8552 -7.8624 6.7948 52 1 2.5831 -8.2096 7.4553 53 1 2.4719 -9.7763 6.6034 54 1 3.2197 -2.5160 4.3750 55 1 3.6560 -0.1129 4.0686 56 1 2.8311 1.0430 2.0584 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608542_4549614.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:46:54 Heat of formation + Delta-G solvation = -95.354936 kcal Electronic energy + Delta-G solvation = -33937.160514 eV Core-core repulsion = 29742.642891 eV Total energy + Delta-G solvation = -4194.517623 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 377.198 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -41.81658 -41.16057 -39.11594 -38.00500 -37.31779 -36.24622 -34.29334 -33.32959 -32.61625 -31.31710 -30.42482 -29.71294 -27.33706 -26.95328 -25.89596 -24.78730 -23.72554 -23.62950 -22.63339 -21.81698 -21.12654 -20.03270 -18.98437 -18.47155 -18.13597 -17.55177 -17.49737 -17.14920 -16.94855 -16.51973 -15.95278 -15.85282 -15.68175 -15.63815 -15.32785 -15.12751 -14.87693 -14.65611 -14.56165 -14.52028 -14.33247 -14.19383 -13.87644 -13.55451 -13.49610 -13.40320 -13.07360 -12.97711 -12.75683 -12.59948 -12.43783 -12.32518 -12.24650 -12.11230 -12.01324 -11.90138 -11.86045 -11.75770 -11.64988 -11.50110 -11.42285 -10.97541 -10.50783 -10.40204 -10.37368 -10.17987 -9.93129 -9.68430 -9.30797 0.16150 0.34383 1.14988 1.42841 1.47108 1.52466 1.62100 1.74385 1.85288 1.91800 2.06092 2.34598 2.59969 2.69460 3.43577 3.45032 3.69284 3.82368 3.83173 3.87658 3.91281 4.01818 4.04949 4.08715 4.17443 4.20149 4.21450 4.25484 4.31750 4.34015 4.39366 4.47336 4.54477 4.58762 4.60710 4.64785 4.65660 4.69485 4.73758 4.86299 4.93311 4.94616 4.97264 5.00992 5.02154 5.11582 5.14807 5.20313 5.27818 5.32184 5.32926 5.35277 5.40483 5.43376 5.44981 5.47794 5.64554 5.66736 6.29231 6.36908 6.82609 7.05197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.085 4.085 3 Si 0.984 3.016 4 H -0.270 1.270 5 H -0.259 1.259 6 H -0.252 1.252 7 C -0.048 4.048 8 C -0.135 4.135 9 C 0.120 3.880 10 O -0.319 6.319 11 C 0.074 3.926 12 C -0.144 4.144 13 C 0.539 3.461 14 O -0.570 6.570 15 N -0.608 5.608 16 C 0.084 3.916 17 C -0.136 4.136 18 C -0.402 4.402 19 Si 1.034 2.966 20 C -0.443 4.443 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.426 4.426 24 C -0.435 4.435 25 C 0.115 3.885 26 C -0.213 4.213 27 C -0.077 4.077 28 C -0.174 4.174 29 H 0.399 0.601 30 H 0.098 0.902 31 H 0.138 0.862 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.110 0.890 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.046 0.954 45 H 0.055 0.945 46 H 0.051 0.949 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.083 0.917 50 H 0.089 0.911 51 H 0.056 0.944 52 H 0.056 0.944 53 H 0.124 0.876 54 H 0.136 0.864 55 H 0.149 0.851 56 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.960 -5.117 -3.615 6.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.194 4.194 3 Si 0.808 3.192 4 H -0.195 1.195 5 H -0.183 1.183 6 H -0.176 1.176 7 C -0.049 4.049 8 C -0.154 4.154 9 C 0.074 3.926 10 O -0.233 6.233 11 C -0.001 4.001 12 C -0.184 4.184 13 C 0.330 3.670 14 O -0.451 6.451 15 N -0.341 5.341 16 C -0.037 4.037 17 C -0.174 4.174 18 C -0.491 4.491 19 Si 1.224 2.776 20 C -0.526 4.526 21 C -0.158 4.158 22 C -0.156 4.156 23 C -0.510 4.510 24 C -0.521 4.521 25 C -0.007 4.007 26 C -0.232 4.232 27 C -0.095 4.095 28 C -0.191 4.191 29 H 0.250 0.750 30 H 0.116 0.884 31 H 0.156 0.844 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.128 0.872 37 H 0.108 0.892 38 H 0.124 0.876 39 H 0.087 0.913 40 H 0.114 0.886 41 H 0.106 0.894 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.064 0.936 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.084 0.916 48 H 0.086 0.914 49 H 0.102 0.898 50 H 0.108 0.892 51 H 0.075 0.925 52 H 0.075 0.925 53 H 0.142 0.858 54 H 0.154 0.846 55 H 0.167 0.833 56 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.392 -4.367 -2.735 5.681 hybrid contribution 0.603 0.366 0.060 0.708 sum -1.789 -4.001 -2.675 5.135 Atomic orbital electron populations 1.86469 1.17244 1.82271 1.51116 1.24839 0.85791 1.11019 0.97780 0.85205 0.79600 0.74306 0.80063 1.19520 1.18286 1.17630 1.19356 0.96797 0.93055 0.95653 1.20361 1.03396 0.94136 0.97499 1.19122 0.95511 0.83012 0.94923 1.85946 1.74526 1.20047 1.42763 1.22450 0.99119 0.92988 0.85578 1.21742 1.05497 0.93625 0.97501 1.20045 0.78177 0.81696 0.87074 1.90758 1.42354 1.62941 1.48998 1.47692 1.55821 1.07788 1.22778 1.20596 0.95002 0.96026 0.92105 1.21087 0.97415 1.00827 0.98040 1.26258 1.06579 1.08310 1.07964 0.79269 0.66022 0.66365 0.65980 1.27775 0.97318 1.19479 1.07989 1.21923 0.95487 0.97699 1.00651 1.21806 0.99393 0.94010 1.00416 1.26785 1.21422 1.00421 1.02349 1.27509 0.99162 1.04261 1.21127 1.21720 0.93244 0.98432 0.87309 1.21516 1.04507 0.96355 1.00818 1.21166 0.97442 0.93667 0.97246 1.21155 1.02280 1.00372 0.95329 0.75016 0.88442 0.84398 0.91772 0.91784 0.85563 0.85571 0.87207 0.89194 0.87574 0.91271 0.88581 0.89441 0.89875 0.89987 0.93558 0.92610 0.92993 0.91571 0.91436 0.89796 0.89230 0.92538 0.92547 0.85845 0.84606 0.83329 0.85014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.71 12.81 -148.98 -1.91 -2.62 16 2 C -0.08 -0.04 2.79 71.23 0.20 0.16 16 3 Si 0.98 -0.42 25.14 68.60 1.72 1.30 16 4 H -0.27 -0.86 7.04 99.48 0.70 -0.16 16 5 H -0.26 -0.24 7.11 99.48 0.71 0.46 16 6 H -0.25 0.35 7.11 99.48 0.71 1.06 16 7 C -0.05 -0.28 5.38 -19.88 -0.11 -0.38 16 8 C -0.14 -0.97 9.62 22.37 0.22 -0.75 16 9 C 0.12 0.94 6.69 22.51 0.15 1.09 16 10 O -0.32 -2.03 10.14 -92.40 -0.94 -2.97 16 11 C 0.07 0.28 3.97 71.98 0.29 0.57 16 12 C -0.14 0.20 4.16 29.85 0.12 0.32 16 13 C 0.54 1.10 4.09 87.66 0.36 1.46 16 14 O -0.57 -5.92 14.36 -3.03 -0.04 -5.96 16 15 N -0.61 2.06 1.63 -833.12 -1.36 0.70 16 16 C 0.08 -0.84 4.62 84.31 0.39 -0.45 16 17 C -0.14 1.36 5.65 29.68 0.17 1.53 16 18 C -0.40 3.29 4.83 73.21 0.35 3.64 16 19 Si 1.03 -3.12 8.77 68.60 0.60 -2.52 16 20 C -0.44 -0.69 4.05 73.11 0.30 -0.39 16 21 C -0.12 -0.56 5.97 31.97 0.19 -0.37 16 22 C -0.12 -0.36 6.09 31.71 0.19 -0.17 16 23 C -0.43 -0.25 5.84 72.85 0.43 0.18 16 24 C -0.44 -0.01 5.03 73.11 0.37 0.35 16 25 C 0.12 -0.32 5.78 87.83 0.51 0.19 16 26 C -0.21 -1.42 9.04 22.37 0.20 -1.22 16 27 C -0.08 -0.38 10.04 22.25 0.22 -0.16 16 28 C -0.17 -0.93 8.67 22.28 0.19 -0.73 16 29 H 0.40 -3.33 8.74 -74.06 -0.65 -3.98 16 30 H 0.10 -0.37 7.96 -2.39 -0.02 -0.38 16 31 H 0.14 0.74 8.06 -2.91 -0.02 0.72 16 32 H 0.06 0.36 7.19 -2.39 -0.02 0.34 16 33 H 0.06 0.33 7.62 -2.38 -0.02 0.31 16 34 H 0.13 -0.68 7.64 -2.39 -0.02 -0.70 16 35 H 0.13 -0.55 5.14 -2.38 -0.01 -0.56 16 36 H 0.11 -1.51 7.19 -2.39 -0.02 -1.53 16 37 H 0.09 -1.10 7.22 -2.39 -0.02 -1.12 16 38 H 0.11 -1.35 8.14 -2.39 -0.02 -1.37 16 39 H 0.07 -0.62 4.68 -2.38 -0.01 -0.63 16 40 H 0.10 -1.02 7.93 -2.39 -0.02 -1.04 16 41 H 0.09 -0.71 7.95 -2.39 -0.02 -0.73 16 42 H 0.08 -0.06 6.67 -2.38 -0.02 -0.08 16 43 H 0.08 0.34 2.64 -2.39 -0.01 0.34 16 44 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 45 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 46 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 47 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 48 H 0.07 0.13 8.03 -2.39 -0.02 0.11 16 49 H 0.08 -0.11 8.03 -2.39 -0.02 -0.13 16 50 H 0.09 -0.21 8.00 -2.38 -0.02 -0.23 16 51 H 0.06 0.38 7.51 -2.38 -0.02 0.36 16 52 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 53 H 0.12 -1.19 7.19 -2.39 -0.02 -1.20 16 54 H 0.14 0.68 6.30 -2.91 -0.02 0.67 16 55 H 0.15 0.02 8.06 -2.91 -0.02 0.00 16 56 H 0.13 0.31 4.86 -2.91 -0.01 0.30 16 Total: 0.00 -19.28 409.84 3.81 -15.47 By element: Atomic # 1 Polarization: -9.26 SS G_CDS: 0.99 Total: -8.27 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: 4.74 Total: 4.87 kcal Atomic # 7 Polarization: 2.06 SS G_CDS: -1.36 Total: 0.70 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: -2.89 Total: -11.55 kcal Atomic # 14 Polarization: -3.54 SS G_CDS: 2.33 Total: -1.21 kcal Total: -19.28 3.81 -15.47 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608542_4549614.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.885 kcal (2) G-P(sol) polarization free energy of solvation -19.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds