Wall clock time and date at job start Sun Mar 7 2021 06:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42891 * 1 3 3 Si 1.86305 * 109.47427 * 2 1 4 4 H 1.48492 * 109.47400 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46831 * 300.00313 * 3 2 1 6 6 H 1.48499 * 109.46783 * 59.99870 * 3 2 1 7 7 C 1.50696 * 109.47290 * 120.00174 * 2 1 3 8 8 C 1.38245 * 119.94404 * 65.00162 * 7 2 1 9 9 C 1.38169 * 120.05142 * 179.97438 * 8 7 2 10 10 N 1.48011 * 120.02204 * 180.02562 * 9 8 7 11 11 O 1.21796 * 120.00026 * 359.97438 * 10 9 8 12 12 O 1.21798 * 119.99472 * 179.97438 * 10 9 8 13 13 C 1.38711 * 119.94927 * 0.02562 * 9 8 7 14 14 O 1.35899 * 120.05602 * 179.97438 * 13 9 8 15 15 C 1.42893 * 116.99960 * 179.97438 * 14 13 9 16 16 C 1.50701 * 109.47487 * 179.97438 * 15 14 13 17 17 O 1.21285 * 119.99836 * 359.97438 * 16 15 14 18 18 N 1.34768 * 120.00336 * 180.02562 * 16 15 14 19 19 C 1.43959 * 122.79674 * 359.97438 * 18 16 15 20 20 C 1.55551 * 110.01698 * 291.09142 * 19 18 16 21 21 C 1.56840 * 111.25828 * 322.51825 * 20 19 18 22 22 Si 1.83026 * 113.74252 * 319.77717 * 21 20 19 23 23 C 1.87572 * 112.77175 * 208.10424 * 22 21 20 24 24 C 1.56451 * 98.94111 * 100.63197 * 23 22 21 25 25 C 1.53779 * 109.81275 * 39.20403 * 24 23 22 26 26 C 1.55731 * 111.40655 * 312.28236 * 25 24 23 27 27 C 1.88532 * 109.77311 * 84.97192 * 22 21 20 28 28 C 1.46406 * 104.59141 * 294.13550 * 27 22 21 29 29 C 1.38758 * 119.88675 * 0.25251 * 13 9 8 30 30 C 1.38117 * 119.93895 * 359.46894 * 29 13 9 31 31 H 0.96703 * 114.00188 * 300.00195 * 1 2 3 32 32 H 1.09003 * 109.47175 * 240.00238 * 2 1 3 33 33 H 1.07994 * 119.96894 * 0.02562 * 8 7 2 34 34 H 1.09005 * 109.47344 * 59.99534 * 15 14 13 35 35 H 1.08997 * 109.47412 * 299.99522 * 15 14 13 36 36 H 1.08999 * 109.37953 * 51.25411 * 19 18 16 37 37 H 1.09000 * 109.38343 * 171.03477 * 19 18 16 38 38 H 1.08999 * 109.12190 * 82.97887 * 20 19 18 39 39 H 1.08998 * 109.11910 * 202.12463 * 20 19 18 40 40 H 1.09000 * 108.62617 * 80.87565 * 21 20 19 41 41 H 1.09002 * 108.62882 * 198.80874 * 21 20 19 42 42 H 1.08998 * 111.50389 * 218.06835 * 23 22 21 43 43 H 1.09007 * 111.49858 * 343.19914 * 23 22 21 44 44 H 1.08997 * 109.41587 * 279.09487 * 24 23 22 45 45 H 1.09008 * 109.36513 * 159.27817 * 24 23 22 46 46 H 1.09006 * 109.09779 * 191.77355 * 25 24 23 47 47 H 1.08997 * 109.01336 * 72.74375 * 25 24 23 48 48 H 1.09001 * 111.15750 * 270.12417 * 26 25 24 49 49 H 1.09001 * 111.18884 * 145.89917 * 26 25 24 50 50 H 1.09002 * 110.39952 * 175.37448 * 27 22 21 51 51 H 1.08995 * 110.40213 * 52.90457 * 27 22 21 52 52 H 1.09006 * 108.75245 * 178.70433 * 28 27 22 53 53 H 1.08997 * 108.75728 * 296.95332 * 28 27 22 54 54 H 1.07994 * 120.02380 * 179.72658 * 29 13 9 55 55 H 1.08008 * 119.96944 * 180.27972 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 1 3.5349 1.7565 0.0006 5 1 1.5550 2.4565 -1.2125 6 1 1.5550 2.4565 1.2125 7 6 1.9313 -0.7104 1.2304 8 6 1.6840 -2.0603 1.3971 9 6 2.1441 -2.7140 2.5241 10 7 1.8795 -4.1594 2.7016 11 8 1.2557 -4.7729 1.8543 12 8 2.2856 -4.7353 3.6950 13 6 2.8540 -2.0147 3.4889 14 8 3.3070 -2.6553 4.5985 15 6 4.0310 -1.8723 5.5496 16 6 4.4498 -2.7453 6.7044 17 8 4.1567 -3.9221 6.7124 18 7 5.1492 -2.2181 7.7287 19 6 5.5286 -0.8304 7.7814 20 6 6.5988 -0.5293 6.6935 21 6 7.6004 -1.7258 6.5346 22 14 8.0865 -2.4957 8.1223 23 6 9.7923 -3.2732 8.0599 24 6 10.6022 -2.1404 8.7729 25 6 9.7786 -1.5644 9.9369 26 6 8.3190 -1.2457 9.4973 27 6 6.8056 -3.7847 8.6246 28 6 5.5892 -3.0133 8.8865 29 6 3.0958 -0.6585 3.3220 30 6 2.6388 -0.0110 2.1909 31 1 -0.3934 0.4417 0.7650 32 1 1.7923 -0.5138 -0.8900 33 1 1.1316 -2.6044 0.6454 34 1 3.3953 -1.0662 5.9158 35 1 4.9159 -1.4495 5.0738 36 1 4.6506 -0.2085 7.6068 37 1 5.9415 -0.6054 8.7647 38 1 6.0997 -0.3526 5.7408 39 1 7.1542 0.3648 6.9768 40 1 7.1372 -2.4864 5.9062 41 1 8.4994 -1.3635 6.0358 42 1 9.8275 -4.2052 8.6241 43 1 10.1279 -3.4185 7.0330 44 1 10.8227 -1.3477 8.0580 45 1 11.5357 -2.5508 9.1579 46 1 10.2527 -0.6487 10.2904 47 1 9.7560 -2.2906 10.7494 48 1 8.2353 -0.2262 9.1206 49 1 7.6153 -1.4207 10.3112 50 1 7.1257 -4.3072 9.5261 51 1 6.6396 -4.4921 7.8122 52 1 4.7904 -3.7016 9.1629 53 1 5.7749 -2.3390 9.7225 54 1 3.6445 -0.1109 4.0739 55 1 2.8307 1.0436 2.0584 RHF calculation, no. of doubly occupied orbitals= 74 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608542_4549638.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:53:59 Heat of formation + Delta-G solvation = -96.081902 kcal Electronic energy + Delta-G solvation = -38263.632011 eV Core-core repulsion = 33393.604048 eV Total energy + Delta-G solvation = -4870.027964 eV No. of doubly occupied orbitals = 74 Molecular weight (most abundant/longest-lived isotopes) = 408.177 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -43.31344 -41.92213 -41.06914 -39.55087 -37.82684 -37.60196 -37.33874 -36.16038 -34.10074 -33.45807 -32.31001 -31.83916 -29.81862 -29.60177 -27.83967 -27.23906 -26.56065 -24.92676 -24.51106 -23.53168 -22.78520 -22.58159 -21.05440 -20.63237 -19.98766 -19.77294 -19.25641 -18.65933 -18.35211 -18.06541 -17.64052 -17.43852 -16.91692 -16.34277 -16.26476 -16.05990 -16.02649 -15.70077 -15.68560 -15.43570 -15.30213 -15.07490 -14.76164 -14.58860 -14.23949 -14.04448 -13.95968 -13.90104 -13.71116 -13.29262 -13.23670 -12.79776 -12.71710 -12.65905 -12.47531 -12.45243 -12.31398 -12.29154 -12.22367 -12.20888 -12.09045 -12.07591 -11.92172 -11.72008 -11.59894 -11.32539 -10.96230 -10.86477 -10.52005 -10.50478 -10.31683 -10.14427 -9.83167 -9.76592 -1.33701 -0.27119 0.12965 0.33138 1.13440 1.17545 1.40114 1.48656 1.55999 1.68694 1.83172 1.99427 2.00658 2.03181 2.21034 2.62659 3.09090 3.14679 3.36120 3.43715 3.55126 3.66809 3.73321 3.77149 3.86124 3.98949 4.08076 4.12753 4.13919 4.19009 4.27643 4.32955 4.36938 4.41913 4.50031 4.55643 4.60672 4.63878 4.65434 4.70421 4.72881 4.79326 4.91364 4.92410 5.05229 5.06839 5.09552 5.14919 5.16931 5.22232 5.28373 5.35209 5.38424 5.41518 5.52353 5.53667 5.61464 5.72600 6.36430 6.40988 6.69248 7.04175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.087 4.087 3 Si 0.986 3.014 4 H -0.241 1.241 5 H -0.280 1.280 6 H -0.229 1.229 7 C -0.149 4.149 8 C 0.003 3.997 9 C -0.103 4.103 10 N 0.034 4.966 11 O -0.193 6.193 12 O -0.181 6.181 13 C 0.191 3.809 14 O -0.291 6.291 15 C 0.022 3.978 16 C 0.517 3.483 17 O -0.564 6.564 18 N -0.595 5.595 19 C 0.065 3.935 20 C -0.129 4.129 21 C -0.420 4.420 22 Si 1.045 2.955 23 C -0.435 4.435 24 C -0.126 4.126 25 C -0.123 4.123 26 C -0.394 4.394 27 C -0.444 4.444 28 C 0.116 3.884 29 C -0.191 4.191 30 C -0.016 4.016 31 H 0.392 0.608 32 H 0.125 0.875 33 H 0.158 0.842 34 H 0.143 0.857 35 H 0.136 0.864 36 H 0.107 0.893 37 H 0.121 0.879 38 H 0.077 0.923 39 H 0.106 0.894 40 H 0.050 0.950 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.053 0.947 46 H 0.068 0.932 47 H 0.057 0.943 48 H 0.101 0.899 49 H 0.093 0.907 50 H 0.096 0.904 51 H 0.049 0.951 52 H 0.045 0.955 53 H 0.120 0.880 54 H 0.201 0.799 55 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.823 16.951 2.976 17.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.196 4.196 3 Si 0.807 3.193 4 H -0.164 1.164 5 H -0.205 1.205 6 H -0.151 1.151 7 C -0.151 4.151 8 C -0.016 4.016 9 C -0.188 4.188 10 N 0.544 4.456 11 O -0.403 6.403 12 O -0.393 6.393 13 C 0.141 3.859 14 O -0.201 6.201 15 C -0.055 4.055 16 C 0.304 3.696 17 O -0.441 6.441 18 N -0.329 5.329 19 C -0.057 4.057 20 C -0.167 4.167 21 C -0.507 4.507 22 Si 1.235 2.765 23 C -0.519 4.519 24 C -0.163 4.163 25 C -0.160 4.160 26 C -0.482 4.482 27 C -0.527 4.527 28 C -0.005 4.005 29 C -0.210 4.210 30 C -0.033 4.033 31 H 0.241 0.759 32 H 0.143 0.857 33 H 0.175 0.825 34 H 0.160 0.840 35 H 0.154 0.846 36 H 0.125 0.875 37 H 0.139 0.861 38 H 0.095 0.905 39 H 0.125 0.875 40 H 0.069 0.931 41 H 0.102 0.898 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.076 0.924 48 H 0.120 0.880 49 H 0.112 0.888 50 H 0.115 0.885 51 H 0.068 0.932 52 H 0.063 0.937 53 H 0.138 0.862 54 H 0.218 0.782 55 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 5.102 17.241 2.385 18.138 hybrid contribution -0.123 -2.022 0.330 2.053 sum 4.979 15.218 2.716 16.241 Atomic orbital electron populations 1.86553 1.17372 1.82010 1.50228 1.25297 0.85126 1.12113 0.97018 0.85205 0.80391 0.72468 0.81281 1.16440 1.20537 1.15148 1.20484 1.02531 0.92291 0.99751 1.20904 0.92847 0.94985 0.92905 1.20891 1.15683 0.79803 1.02468 1.43890 0.97944 1.04229 0.99492 1.94493 1.39788 1.67893 1.38091 1.94694 1.54121 1.70871 1.19600 1.18991 0.89781 0.92185 0.84936 1.86473 1.67352 1.37934 1.28348 1.23325 0.99651 0.94048 0.88455 1.20224 0.78099 0.87683 0.83566 1.90833 1.55752 1.18794 1.78723 1.47432 1.53388 1.11947 1.20090 1.22507 1.00022 0.80107 1.03087 1.22845 0.96102 0.98238 0.99518 1.26501 1.03522 1.03909 1.16773 0.79056 0.63551 0.66567 0.67295 1.26942 1.20452 1.02350 1.02182 1.22094 0.99026 0.97357 0.97832 1.21869 0.95513 1.00877 0.97790 1.26544 0.98276 1.10925 1.12448 1.25730 1.10369 1.10412 1.06203 1.20068 0.96609 0.96338 0.87490 1.21736 1.06609 0.90021 1.02614 1.21735 0.89669 1.01727 0.90188 0.75866 0.85693 0.82477 0.84008 0.84646 0.87481 0.86106 0.90482 0.87530 0.93138 0.89770 0.91282 0.91302 0.91105 0.92784 0.91361 0.92424 0.88005 0.88818 0.88525 0.93224 0.93681 0.86179 0.78243 0.80427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.28 12.83 -148.98 -1.91 0.37 16 2 C -0.09 0.62 2.80 71.23 0.20 0.82 16 3 Si 0.99 -9.78 25.13 68.60 1.72 -8.06 16 4 H -0.24 2.54 7.11 99.48 0.71 3.25 16 5 H -0.28 1.09 7.11 99.48 0.71 1.80 16 6 H -0.23 2.93 7.04 99.48 0.70 3.63 16 7 C -0.15 0.82 5.35 -19.85 -0.11 0.71 16 8 C 0.00 0.00 9.19 22.26 0.20 0.21 16 9 C -0.10 -0.79 6.87 36.47 0.25 -0.54 16 10 N 0.03 0.59 4.45 -46.24 -0.21 0.38 16 11 O -0.19 -3.59 18.45 18.89 0.35 -3.24 16 12 O -0.18 -4.15 17.24 25.61 0.44 -3.71 16 13 C 0.19 0.39 6.67 22.51 0.15 0.54 16 14 O -0.29 -1.95 7.68 -63.39 -0.49 -2.43 16 15 C 0.02 -0.09 3.95 71.24 0.28 0.19 16 16 C 0.52 2.05 7.24 87.66 0.63 2.68 16 17 O -0.56 -9.94 16.50 15.99 0.26 -9.68 16 18 N -0.59 2.37 1.83 -833.00 -1.53 0.84 16 19 C 0.07 -0.90 5.01 87.73 0.44 -0.46 16 20 C -0.13 1.84 5.53 32.82 0.18 2.02 16 21 C -0.42 3.22 4.38 73.33 0.32 3.54 16 22 Si 1.05 -7.05 9.04 68.60 0.62 -6.43 16 23 C -0.44 0.62 5.94 73.18 0.43 1.05 16 24 C -0.13 0.35 5.97 32.06 0.19 0.55 16 25 C -0.12 0.66 6.10 31.80 0.19 0.86 16 26 C -0.39 3.96 4.73 72.93 0.35 4.30 16 27 C -0.44 0.21 5.19 69.95 0.36 0.58 16 28 C 0.12 -0.26 4.84 84.21 0.41 0.15 16 29 C -0.19 1.73 9.04 22.37 0.20 1.94 16 30 C -0.02 0.16 8.66 22.25 0.19 0.35 16 31 H 0.39 -4.46 8.70 -74.06 -0.64 -5.11 16 32 H 0.13 -0.95 7.96 -2.39 -0.02 -0.97 16 33 H 0.16 0.41 7.61 -2.91 -0.02 0.39 16 34 H 0.14 -1.86 7.31 -2.38 -0.02 -1.88 16 35 H 0.14 -1.50 5.26 -2.39 -0.01 -1.51 16 36 H 0.11 -2.03 7.65 -2.39 -0.02 -2.05 16 37 H 0.12 -2.11 5.61 -2.39 -0.01 -2.13 16 38 H 0.08 -1.30 5.98 -2.39 -0.01 -1.32 16 39 H 0.11 -1.94 8.14 -2.39 -0.02 -1.96 16 40 H 0.05 -0.12 7.56 -2.39 -0.02 -0.14 16 41 H 0.08 -0.70 7.90 -2.39 -0.02 -0.72 16 42 H 0.07 0.04 8.04 -2.39 -0.02 0.02 16 43 H 0.07 -0.03 8.04 -2.38 -0.02 -0.04 16 44 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 45 H 0.05 -0.05 8.14 -2.38 -0.02 -0.07 16 46 H 0.07 -0.40 8.14 -2.38 -0.02 -0.42 16 47 H 0.06 -0.25 8.14 -2.39 -0.02 -0.27 16 48 H 0.10 -1.39 8.01 -2.39 -0.02 -1.41 16 49 H 0.09 -1.12 7.18 -2.39 -0.02 -1.14 16 50 H 0.10 -0.17 8.02 -2.39 -0.02 -0.19 16 51 H 0.05 0.35 8.01 -2.39 -0.02 0.33 16 52 H 0.04 0.18 7.89 -2.38 -0.02 0.16 16 53 H 0.12 -1.21 5.99 -2.39 -0.01 -1.22 16 54 H 0.20 -3.72 6.30 -2.91 -0.02 -3.74 16 55 H 0.18 -3.02 4.86 -2.91 -0.01 -3.04 16 Total: 0.00 -37.73 426.44 5.19 -32.54 By element: Atomic # 1 Polarization: -21.13 SS G_CDS: 1.04 Total: -20.09 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: 4.89 Total: 19.50 kcal Atomic # 7 Polarization: 2.96 SS G_CDS: -1.73 Total: 1.23 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -1.34 Total: -18.69 kcal Atomic # 14 Polarization: -16.83 SS G_CDS: 2.34 Total: -14.49 kcal Total: -37.73 5.19 -32.54 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608542_4549638.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.545 kcal (2) G-P(sol) polarization free energy of solvation -37.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds