Wall clock time and date at job start Sun Mar 7 2021 07:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86302 * 109.46978 * 2 1 4 4 H 1.48497 * 109.47353 * 300.00305 * 3 2 1 5 5 H 1.48506 * 109.47190 * 60.00309 * 3 2 1 6 6 H 1.48504 * 109.46967 * 179.97438 * 3 2 1 7 7 C 1.50699 * 109.47177 * 240.00505 * 2 1 3 8 8 C 1.34236 * 126.50493 * 104.97144 * 7 2 1 9 9 N 1.36830 * 109.93836 * 180.02562 * 8 7 2 10 10 C 1.46501 * 125.06043 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47144 * 265.02102 * 10 9 8 12 12 O 1.21280 * 119.99504 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00018 * 179.97438 * 11 10 9 14 14 C 1.44105 * 122.88357 * 0.10217 * 13 11 10 15 15 C 1.55543 * 109.94784 * 291.08551 * 14 13 11 16 16 C 1.56823 * 111.25797 * 322.52902 * 15 14 13 17 17 Si 1.83036 * 113.74962 * 319.76836 * 16 15 14 18 18 C 1.87579 * 112.76437 * 208.09626 * 17 16 15 19 19 C 1.56455 * 98.94362 * 100.58256 * 18 17 16 20 20 C 1.53801 * 109.80367 * 39.22310 * 19 18 17 21 21 C 1.55738 * 111.40710 * 312.29960 * 20 19 18 22 22 C 1.88515 * 109.75820 * 84.97465 * 17 16 15 23 23 C 1.46417 * 104.61651 * 294.12713 * 22 17 16 24 24 C 1.37692 * 109.87777 * 0.22695 * 9 8 7 25 25 C 1.39087 * 133.51132 * 180.39311 * 24 9 8 26 26 C 1.37785 * 119.77858 * 179.65306 * 25 24 9 27 27 C 1.38793 * 120.66525 * 359.75700 * 26 25 24 28 28 C 1.36664 * 120.52903 * 359.97438 * 27 26 25 29 29 C 1.39587 * 119.76533 * 0.02562 * 28 27 26 30 30 H 0.96701 * 114.00392 * 59.99626 * 1 2 3 31 31 H 1.08994 * 109.47272 * 120.00130 * 2 1 3 32 32 H 1.07997 * 125.02581 * 0.02562 * 8 7 2 33 33 H 1.09008 * 109.47099 * 145.02293 * 10 9 8 34 34 H 1.09001 * 109.47511 * 25.02323 * 10 9 8 35 35 H 1.08993 * 109.41752 * 170.93815 * 14 13 11 36 36 H 1.09000 * 109.32912 * 51.17324 * 14 13 11 37 37 H 1.09004 * 109.11917 * 202.07241 * 15 14 13 38 38 H 1.08999 * 109.07497 * 82.95394 * 15 14 13 39 39 H 1.08998 * 108.63063 * 198.66360 * 16 15 14 40 40 H 1.09001 * 108.51533 * 80.79039 * 16 15 14 41 41 H 1.09002 * 111.50157 * 218.01632 * 18 17 16 42 42 H 1.09001 * 111.50067 * 343.15034 * 18 17 16 43 43 H 1.09001 * 109.41182 * 279.12115 * 19 18 17 44 44 H 1.09003 * 109.36790 * 159.29451 * 19 18 17 45 45 H 1.08999 * 109.09764 * 191.79106 * 20 19 18 46 46 H 1.08997 * 109.01306 * 72.76192 * 20 19 18 47 47 H 1.09002 * 111.16192 * 270.08263 * 21 20 19 48 48 H 1.09003 * 111.19472 * 145.86599 * 21 20 19 49 49 H 1.09008 * 110.40034 * 175.35803 * 22 17 16 50 50 H 1.08996 * 110.40804 * 52.90314 * 22 17 16 51 51 H 1.09002 * 108.76235 * 178.69788 * 23 22 17 52 52 H 1.09000 * 108.76140 * 296.95987 * 23 22 17 53 53 H 1.07997 * 120.10520 * 359.41062 * 25 24 9 54 54 H 1.07993 * 119.66981 * 179.73775 * 26 25 24 55 55 H 1.07996 * 119.73263 * 179.97438 * 27 26 25 56 56 H 1.07998 * 120.11866 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 1 1.5549 2.4566 -1.2124 5 1 1.5549 2.4565 1.2126 6 1 3.5349 1.7565 0.0006 7 6 1.9313 -0.7103 -1.2305 8 6 2.4603 -0.1375 -2.3232 9 7 2.8019 -1.0988 -3.2350 10 6 3.4056 -0.8400 -4.5445 11 6 2.3251 -0.7835 -5.5935 12 8 1.1650 -0.9431 -5.2781 13 7 2.6479 -0.5545 -6.8818 14 6 4.0048 -0.3574 -7.3253 15 6 4.5472 0.9977 -6.7878 16 6 3.4321 2.1003 -6.7970 17 14 2.3635 2.0557 -8.2823 18 6 1.6543 3.7370 -8.7170 19 6 2.6354 4.1234 -9.8728 20 6 2.9414 2.8852 -10.7323 21 6 3.3094 1.6567 -9.8486 22 6 0.9703 0.8115 -8.0280 23 6 1.6431 -0.4869 -7.9553 24 6 2.4886 -2.3452 -2.7408 25 6 2.6278 -3.6359 -3.2400 26 6 2.2140 -4.7105 -2.4833 27 6 1.6632 -4.5192 -1.2238 28 6 1.5222 -3.2600 -0.7117 29 6 1.9348 -2.1570 -1.4611 30 1 -0.3934 0.4417 -0.7650 31 1 1.7923 -0.5138 0.8899 32 1 2.5961 0.9249 -2.4620 33 1 4.1054 -1.6401 -4.7865 34 1 3.9367 0.1115 -4.5182 35 1 4.0327 -0.3516 -8.4148 36 1 4.6280 -1.1700 -6.9519 37 1 5.3772 1.3239 -7.4147 38 1 4.9038 0.8590 -5.7672 39 1 3.9093 3.0786 -6.7406 40 1 2.8068 1.9675 -5.9141 41 1 0.6276 3.6572 -9.0743 42 1 1.7301 4.4311 -7.8799 43 1 3.5626 4.5076 -9.4478 44 1 2.1763 4.8918 -10.4949 45 1 3.7761 3.1095 -11.3965 46 1 2.0639 2.6434 -11.3319 47 1 4.3822 1.6145 -9.6604 48 1 2.9546 0.7285 -10.2967 49 1 0.2807 0.8354 -8.8719 50 1 0.4415 1.0180 -7.0975 51 1 0.8946 -1.2605 -7.7842 52 1 2.1351 -0.6806 -8.9085 53 1 3.0551 -3.7950 -4.2189 54 1 2.3190 -5.7117 -2.8743 55 1 1.3435 -5.3723 -0.6438 56 1 1.0932 -3.1189 0.2693 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608542_9818708.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:11:24 Heat of formation + Delta-G solvation = -23.685454 kcal Electronic energy + Delta-G solvation = -35265.783908 eV Core-core repulsion = 31071.178107 eV Total energy + Delta-G solvation = -4194.605801 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 386.194 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -42.59908 -41.12672 -38.18029 -37.93079 -37.50577 -36.17544 -34.50190 -33.62415 -31.91506 -31.18733 -30.26093 -29.78717 -28.92125 -27.26185 -25.88860 -24.93387 -24.12292 -23.52578 -22.68237 -22.42752 -21.06465 -20.73070 -20.07026 -18.66155 -18.22117 -17.82892 -17.38920 -16.99309 -16.54258 -16.44623 -16.21235 -15.97808 -15.70824 -15.65090 -15.53176 -15.37501 -15.03808 -14.80450 -14.69157 -14.63490 -14.51861 -14.34566 -14.16475 -13.95108 -13.68386 -13.30805 -13.23771 -12.82042 -12.71410 -12.63288 -12.59355 -12.46763 -12.36209 -12.28055 -12.16488 -12.10941 -11.96855 -11.90630 -11.70898 -11.63782 -11.34775 -11.09381 -10.56966 -10.51611 -10.33778 -10.29550 -10.16273 -9.77867 -9.17674 -8.64761 0.12533 0.63425 1.19648 1.34634 1.39374 1.46243 1.55144 1.65954 1.67982 1.80624 1.92509 2.00754 2.08420 2.60613 2.94381 3.39601 3.58323 3.59369 3.70471 3.77079 3.86920 4.01027 4.04391 4.06371 4.11348 4.13270 4.17967 4.21256 4.27914 4.30599 4.39966 4.47940 4.49956 4.59300 4.61255 4.63856 4.67950 4.69779 4.70922 4.77609 4.88014 4.89145 4.90199 5.05389 5.07949 5.13149 5.13428 5.20219 5.26039 5.32900 5.36466 5.38903 5.50360 5.50674 5.52153 5.58942 5.66079 5.73307 5.74314 6.15305 6.22023 6.39669 6.73148 7.01872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.052 4.052 3 Si 0.987 3.013 4 H -0.249 1.249 5 H -0.270 1.270 6 H -0.248 1.248 7 C -0.214 4.214 8 C 0.058 3.942 9 N -0.467 5.467 10 C 0.084 3.916 11 C 0.501 3.499 12 O -0.568 6.568 13 N -0.596 5.596 14 C 0.069 3.931 15 C -0.128 4.128 16 C -0.418 4.418 17 Si 1.048 2.952 18 C -0.432 4.432 19 C -0.126 4.126 20 C -0.123 4.123 21 C -0.399 4.399 22 C -0.439 4.439 23 C 0.116 3.884 24 C 0.090 3.910 25 C -0.137 4.137 26 C -0.105 4.105 27 C -0.154 4.154 28 C -0.084 4.084 29 C -0.114 4.114 30 H 0.383 0.617 31 H 0.112 0.888 32 H 0.188 0.812 33 H 0.142 0.858 34 H 0.153 0.847 35 H 0.118 0.882 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.054 0.946 45 H 0.066 0.934 46 H 0.057 0.943 47 H 0.098 0.902 48 H 0.091 0.909 49 H 0.095 0.905 50 H 0.052 0.948 51 H 0.043 0.957 52 H 0.114 0.886 53 H 0.130 0.870 54 H 0.146 0.854 55 H 0.139 0.861 56 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.309 1.810 -6.064 10.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.161 4.161 3 Si 0.809 3.191 4 H -0.173 1.173 5 H -0.195 1.195 6 H -0.171 1.171 7 C -0.221 4.221 8 C -0.067 4.067 9 N -0.149 5.149 10 C -0.040 4.040 11 C 0.289 3.711 12 O -0.446 6.446 13 N -0.329 5.329 14 C -0.053 4.053 15 C -0.167 4.167 16 C -0.505 4.505 17 Si 1.237 2.763 18 C -0.516 4.516 19 C -0.164 4.164 20 C -0.161 4.161 21 C -0.487 4.487 22 C -0.522 4.522 23 C -0.006 4.006 24 C -0.015 4.015 25 C -0.157 4.157 26 C -0.124 4.124 27 C -0.173 4.173 28 C -0.102 4.102 29 C -0.119 4.119 30 H 0.232 0.768 31 H 0.130 0.870 32 H 0.205 0.795 33 H 0.160 0.840 34 H 0.170 0.830 35 H 0.136 0.864 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.116 0.884 48 H 0.109 0.891 49 H 0.113 0.887 50 H 0.071 0.929 51 H 0.061 0.939 52 H 0.132 0.868 53 H 0.148 0.852 54 H 0.164 0.836 55 H 0.157 0.843 56 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.225 2.306 -5.572 10.198 hybrid contribution -1.038 0.046 -0.503 1.154 sum 7.187 2.352 -6.075 9.700 Atomic orbital electron populations 1.86458 1.18412 1.82148 1.49524 1.24510 0.84054 1.10802 0.96767 0.85231 0.80045 0.73312 0.80530 1.17267 1.19475 1.17110 1.20833 1.10461 0.92147 0.98694 1.21940 1.00774 0.94899 0.89079 1.43444 1.53298 1.04031 1.14173 1.22152 0.94202 1.08401 0.79234 1.21123 0.90079 0.76159 0.83742 1.90784 1.22322 1.50417 1.81109 1.47589 1.09506 1.69765 1.06026 1.22435 0.81248 0.98530 1.03134 1.22805 0.98016 0.92816 1.03021 1.26498 1.06905 1.02390 1.14706 0.79010 0.65906 0.64351 0.66994 1.26915 1.02883 1.19618 1.02201 1.22098 0.99032 0.98407 0.96823 1.21874 1.01470 0.94081 0.98630 1.26589 1.08534 0.99940 1.13596 1.25683 1.12533 1.09533 1.04499 1.20032 0.92244 0.97849 0.90434 1.18445 1.01765 0.86872 0.94388 1.20235 1.05321 0.89120 1.01041 1.21138 0.97981 0.98930 0.94323 1.20939 1.02268 0.97131 0.96913 1.20486 0.98599 0.91486 0.99679 1.19312 1.03985 0.93721 0.94838 0.76836 0.87033 0.79549 0.84001 0.83009 0.86384 0.88234 0.88037 0.90833 0.89710 0.92587 0.91145 0.91027 0.91174 0.92667 0.91553 0.92381 0.88374 0.89062 0.88694 0.92914 0.93854 0.86814 0.85176 0.83611 0.84341 0.85790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.94 12.88 -148.98 -1.92 -5.86 16 2 C -0.05 -0.22 3.06 71.24 0.22 -0.01 16 3 Si 0.99 0.45 26.08 68.60 1.79 2.24 16 4 H -0.25 0.14 7.03 99.48 0.70 0.84 16 5 H -0.27 -0.98 7.11 99.48 0.71 -0.27 16 6 H -0.25 0.00 7.11 99.48 0.71 0.71 16 7 C -0.21 -1.56 5.57 -18.62 -0.10 -1.66 16 8 C 0.06 0.25 9.89 83.00 0.82 1.07 16 9 N -0.47 -2.16 2.27 -519.97 -1.18 -3.34 16 10 C 0.08 -0.26 5.21 85.63 0.45 0.19 16 11 C 0.50 1.16 7.22 87.66 0.63 1.80 16 12 O -0.57 -7.82 16.42 -3.03 -0.05 -7.87 16 13 N -0.60 2.47 1.83 -832.63 -1.52 0.95 16 14 C 0.07 -0.84 5.01 87.70 0.44 -0.40 16 15 C -0.13 1.60 5.52 32.81 0.18 1.78 16 16 C -0.42 3.30 4.37 73.32 0.32 3.62 16 17 Si 1.05 -7.42 9.04 68.60 0.62 -6.80 16 18 C -0.43 0.98 5.94 73.19 0.44 1.41 16 19 C -0.13 0.37 5.97 32.07 0.19 0.56 16 20 C -0.12 0.61 6.10 31.81 0.19 0.80 16 21 C -0.40 3.67 4.74 72.93 0.35 4.01 16 22 C -0.44 0.65 5.19 69.95 0.36 1.02 16 23 C 0.12 -0.29 4.84 84.22 0.41 0.11 16 24 C 0.09 0.82 6.80 39.03 0.27 1.08 16 25 C -0.14 -0.90 10.00 22.37 0.22 -0.67 16 26 C -0.10 -0.58 10.01 22.30 0.22 -0.35 16 27 C -0.15 -1.05 9.97 22.03 0.22 -0.83 16 28 C -0.08 -0.82 10.05 22.23 0.22 -0.60 16 29 C -0.11 -1.25 6.35 -20.20 -0.13 -1.38 16 30 H 0.38 0.64 8.70 -74.06 -0.64 0.00 16 31 H 0.11 0.40 7.96 -2.39 -0.02 0.38 16 32 H 0.19 -0.35 6.29 -2.91 -0.02 -0.36 16 33 H 0.14 -1.21 7.81 -2.38 -0.02 -1.22 16 34 H 0.15 -1.41 5.70 -2.39 -0.01 -1.43 16 35 H 0.12 -1.84 5.63 -2.39 -0.01 -1.85 16 36 H 0.10 -1.56 7.66 -2.39 -0.02 -1.58 16 37 H 0.10 -1.58 8.14 -2.38 -0.02 -1.60 16 38 H 0.07 -1.02 5.98 -2.39 -0.01 -1.03 16 39 H 0.08 -0.72 7.90 -2.39 -0.02 -0.74 16 40 H 0.06 -0.24 7.54 -2.39 -0.02 -0.26 16 41 H 0.07 -0.04 8.04 -2.39 -0.02 -0.06 16 42 H 0.07 -0.12 8.04 -2.39 -0.02 -0.14 16 43 H 0.07 -0.32 8.14 -2.39 -0.02 -0.33 16 44 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 45 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 46 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 47 H 0.10 -1.19 8.01 -2.39 -0.02 -1.20 16 48 H 0.09 -0.99 7.19 -2.39 -0.02 -1.01 16 49 H 0.09 -0.23 8.02 -2.38 -0.02 -0.25 16 50 H 0.05 0.26 8.02 -2.39 -0.02 0.24 16 51 H 0.04 0.16 7.89 -2.39 -0.02 0.14 16 52 H 0.11 -1.06 5.99 -2.39 -0.01 -1.08 16 53 H 0.13 0.26 8.06 -2.91 -0.02 0.23 16 54 H 0.15 0.03 8.06 -2.91 -0.02 0.00 16 55 H 0.14 0.34 8.06 -2.91 -0.02 0.31 16 56 H 0.12 1.00 8.06 -2.91 -0.02 0.98 16 Total: 0.00 -25.04 426.90 4.64 -20.40 By element: Atomic # 1 Polarization: -12.25 SS G_CDS: 0.98 Total: -11.27 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 5.92 Total: 11.55 kcal Atomic # 7 Polarization: 0.32 SS G_CDS: -2.70 Total: -2.39 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -1.97 Total: -13.73 kcal Atomic # 14 Polarization: -6.97 SS G_CDS: 2.41 Total: -4.56 kcal Total: -25.04 4.64 -20.40 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608542_9818708.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.285 kcal (2) G-P(sol) polarization free energy of solvation -25.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds