Wall clock time and date at job start Sun Mar 7 2021 09:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47056 * 2 1 4 4 C 1.52997 * 109.47452 * 120.00172 * 2 1 3 5 5 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 6 6 C 1.53006 * 109.47127 * 59.99878 * 4 2 1 7 7 C 1.52997 * 109.47127 * 179.97438 * 6 4 2 8 8 C 1.53000 * 109.47060 * 300.00449 * 7 6 4 9 9 H 1.09004 * 109.46724 * 180.02562 * 8 7 6 10 10 N 1.46500 * 109.47023 * 299.99760 * 8 7 6 11 11 C 1.34780 * 119.99887 * 205.00438 * 10 8 7 12 12 O 1.21569 * 120.00070 * 359.97438 * 11 10 8 13 13 C 1.47693 * 119.99839 * 180.02562 * 11 10 8 14 14 C 1.39819 * 120.16536 * 179.97438 * 13 11 10 15 15 F 1.35101 * 120.11302 * 0.02562 * 14 13 11 16 16 C 1.38321 * 119.78000 * 180.02562 * 14 13 11 17 17 C 1.38207 * 120.11656 * 359.97438 * 16 14 13 18 18 C 1.38457 * 120.33913 * 0.02562 * 17 16 14 19 19 C 1.50697 * 119.88931 * 179.97438 * 18 17 16 20 20 O 1.42907 * 109.46881 * 119.99933 * 19 18 17 21 21 Si 1.86301 * 109.47476 * 0.02562 * 19 18 17 22 22 C 1.37860 * 120.21570 * 359.71729 * 18 17 16 23 23 C 1.52996 * 109.47328 * 60.00126 * 8 7 6 24 24 C 1.52997 * 109.47232 * 179.97438 * 4 2 1 25 25 H 1.08998 * 109.47061 * 299.99160 * 1 2 3 26 26 H 1.09000 * 109.47360 * 59.99978 * 1 2 3 27 27 H 1.09002 * 109.46668 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46812 * 240.00389 * 2 1 3 29 29 H 1.09001 * 109.46997 * 59.99942 * 3 2 1 30 30 H 1.08996 * 109.47452 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47054 * 300.00209 * 3 2 1 32 32 H 1.08998 * 109.46505 * 59.99871 * 6 4 2 33 33 H 1.08996 * 109.46884 * 300.00752 * 6 4 2 34 34 H 1.09002 * 109.47153 * 180.02562 * 7 6 4 35 35 H 1.09001 * 109.46832 * 60.00321 * 7 6 4 36 36 H 0.96999 * 120.00261 * 25.00074 * 10 8 7 37 37 H 1.08003 * 119.94703 * 179.97438 * 16 14 13 38 38 H 1.07998 * 119.83012 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.47605 * 239.99880 * 19 18 17 40 40 H 0.96693 * 113.99943 * 300.00146 * 20 19 18 41 41 H 1.48498 * 110.00159 * 179.97438 * 21 19 18 42 42 H 1.48503 * 109.99383 * 301.31385 * 21 19 18 43 43 H 1.08005 * 120.05857 * 180.30084 * 22 18 17 44 44 H 1.08992 * 109.47554 * 59.99639 * 23 8 7 45 45 H 1.09004 * 109.47108 * 179.97438 * 23 8 7 46 46 H 1.09002 * 109.47045 * 59.99942 * 24 4 2 47 47 H 1.09001 * 109.47375 * 299.99867 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6768 -0.2074 2.1392 6 6 1.5301 -2.1638 1.2492 7 6 2.0407 -2.8853 2.4980 8 6 3.5707 -2.8851 2.4973 9 1 3.9344 -3.3996 3.3869 10 7 4.0585 -3.5755 1.3008 11 6 5.2806 -4.1441 1.3020 12 8 5.9782 -4.0836 2.2958 13 6 5.7726 -4.8396 0.0956 14 6 7.0399 -5.4302 0.0928 15 9 7.8195 -5.3672 1.1944 16 6 7.4930 -6.0791 -1.0417 17 6 6.6954 -6.1440 -2.1686 18 6 5.4396 -5.5609 -2.1712 19 6 4.5788 -5.6373 -3.4057 20 8 3.3587 -6.3131 -3.0944 21 14 5.4844 -6.5739 -4.7374 22 6 4.9722 -4.9153 -1.0464 23 6 4.0806 -1.4427 2.4974 24 6 3.5701 -0.7218 1.2488 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.8934 -2.6775 0.3591 33 1 0.4402 -2.1638 1.2491 34 1 1.6778 -3.9131 2.4978 35 1 1.6777 -2.3716 3.3882 36 1 3.5021 -3.6235 0.5078 37 1 8.4716 -6.5358 -1.0469 38 1 7.0536 -6.6522 -3.0516 39 1 4.3566 -4.6296 -3.7567 40 1 3.4805 -7.2176 -2.7751 41 1 4.6456 -6.6567 -5.9601 42 1 6.7703 -5.8990 -5.0479 43 1 3.9902 -4.4655 -1.0496 44 1 3.7177 -0.9290 3.3875 45 1 5.1707 -1.4426 2.4974 46 1 3.9338 0.3058 1.2486 47 1 3.9331 -1.2359 0.3588 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16623128_12335834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:35:05 Heat of formation + Delta-G solvation = -100.426224 kcal Electronic energy + Delta-G solvation = -28475.895803 eV Core-core repulsion = 24538.819351 eV Total energy + Delta-G solvation = -3937.076452 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -50.02835 -41.69048 -40.47472 -39.45705 -37.44959 -36.68686 -34.15864 -32.52553 -32.21929 -31.96454 -29.74223 -28.02616 -26.63189 -25.61689 -24.08796 -23.40796 -23.11059 -21.79099 -20.87278 -20.23283 -19.34370 -18.38086 -18.26841 -17.42505 -17.03054 -16.72235 -16.68144 -16.24016 -16.00786 -15.79117 -15.68899 -15.23370 -15.04532 -14.85893 -14.70393 -14.46842 -14.39019 -14.33610 -14.14885 -13.64879 -13.41235 -13.22029 -13.12129 -13.09212 -12.86604 -12.63193 -12.26901 -12.15612 -12.08662 -12.04807 -11.85894 -11.72368 -11.33961 -11.19919 -11.00498 -10.85897 -10.48720 -10.40580 -10.09831 -9.82063 -4.96573 -0.51074 -0.05027 1.31103 1.60068 1.67119 1.97062 2.02136 2.46905 3.03293 3.35560 3.45043 3.55262 3.62934 3.65440 3.67749 3.74387 3.99423 4.02224 4.09030 4.09207 4.22547 4.30006 4.36484 4.43770 4.51849 4.55580 4.55722 4.61993 4.65595 4.74126 4.77439 4.81467 4.82465 4.93226 4.96167 5.01126 5.03609 5.07414 5.11562 5.13282 5.15579 5.19892 5.28353 5.33277 5.35774 5.47605 5.54788 5.58150 5.60780 6.35975 6.78800 7.05017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 C -0.152 4.152 4 C -0.077 4.077 5 H 0.071 0.929 6 C -0.115 4.115 7 C -0.120 4.120 8 C 0.146 3.854 9 H 0.068 0.932 10 N -0.700 5.700 11 C 0.552 3.448 12 O -0.572 6.572 13 C -0.188 4.188 14 C 0.132 3.868 15 F -0.137 7.137 16 C -0.151 4.151 17 C -0.052 4.052 18 C -0.133 4.133 19 C -0.067 4.067 20 O -0.551 6.551 21 Si 0.771 3.229 22 C -0.026 4.026 23 C -0.128 4.128 24 C -0.109 4.109 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.410 0.590 37 H 0.168 0.832 38 H 0.168 0.832 39 H 0.118 0.882 40 H 0.397 0.603 41 H -0.301 1.301 42 H -0.280 1.280 43 H 0.154 0.846 44 H 0.080 0.920 45 H 0.040 0.960 46 H 0.063 0.937 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.770 -2.631 -4.865 6.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.107 4.107 3 C -0.209 4.209 4 C -0.095 4.095 5 H 0.090 0.910 6 C -0.152 4.152 7 C -0.158 4.158 8 C 0.042 3.958 9 H 0.086 0.914 10 N -0.353 5.353 11 C 0.340 3.660 12 O -0.452 6.452 13 C -0.192 4.192 14 C 0.112 3.888 15 F -0.115 7.115 16 C -0.170 4.170 17 C -0.070 4.070 18 C -0.133 4.133 19 C -0.177 4.177 20 O -0.359 6.359 21 Si 0.677 3.323 22 C -0.045 4.045 23 C -0.166 4.166 24 C -0.146 4.146 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.249 0.751 37 H 0.185 0.815 38 H 0.185 0.815 39 H 0.136 0.864 40 H 0.247 0.753 41 H -0.229 1.229 42 H -0.207 1.207 43 H 0.171 0.829 44 H 0.098 0.902 45 H 0.059 0.941 46 H 0.081 0.919 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.206 -1.981 -5.077 6.323 hybrid contribution 0.141 0.796 0.439 0.920 sum -3.065 -1.184 -4.638 5.684 Atomic orbital electron populations 1.21902 0.94918 1.02245 1.01620 1.21107 0.95905 0.95831 0.97886 1.21911 1.01011 0.96327 1.01653 1.21176 0.94158 0.95932 0.98233 0.91042 1.21663 1.01591 0.94656 0.97326 1.21804 0.91672 1.02075 1.00246 1.20998 0.95309 0.92160 0.87361 0.91408 1.45916 1.16488 1.55232 1.17704 1.18349 0.82120 0.78463 0.87047 1.90832 1.57303 1.61256 1.35849 1.20090 0.95971 1.06531 0.96638 1.18214 0.88546 0.97903 0.84145 1.91558 1.73650 1.94067 1.52259 1.21397 1.03180 1.01276 0.91104 1.21386 0.92323 0.95421 0.97822 1.20482 0.95996 1.00065 0.96787 1.25123 0.90015 1.02766 0.99791 1.86491 1.28265 1.32821 1.88311 0.93798 0.75600 0.87491 0.75429 1.21142 0.98778 0.94827 0.89759 1.21862 0.99655 0.95315 0.99797 1.21552 0.95818 1.00124 0.97149 0.92836 0.93059 0.91680 0.91354 0.92836 0.92721 0.92915 0.91677 0.90024 0.90486 0.89422 0.75070 0.81478 0.81493 0.86445 0.75252 1.22910 1.20712 0.82877 0.90184 0.94094 0.91855 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.53 8.84 71.98 0.64 1.17 16 2 C -0.09 0.29 2.51 -10.79 -0.03 0.26 16 3 C -0.15 0.27 8.84 71.98 0.64 0.91 16 4 C -0.08 0.28 1.78 -10.79 -0.02 0.26 16 5 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 6 C -0.11 0.63 4.68 30.60 0.14 0.78 16 7 C -0.12 0.47 5.61 30.59 0.17 0.64 16 8 C 0.15 0.22 2.78 44.99 0.13 0.34 16 9 H 0.07 0.43 7.58 -2.39 -0.02 0.41 16 10 N -0.70 -0.92 4.18 -445.55 -1.86 -2.78 16 11 C 0.55 4.66 7.73 86.74 0.67 5.33 16 12 O -0.57 -10.19 15.00 -3.93 -0.06 -10.25 16 13 C -0.19 -0.78 5.88 -20.05 -0.12 -0.90 16 14 C 0.13 0.76 7.29 22.67 0.17 0.92 16 15 F -0.14 -1.77 15.55 44.97 0.70 -1.07 16 16 C -0.15 0.29 10.01 22.28 0.22 0.52 16 17 C -0.05 0.32 8.66 22.31 0.19 0.51 16 18 C -0.13 0.70 5.39 -19.90 -0.11 0.60 16 19 C -0.07 0.46 2.82 71.23 0.20 0.66 16 20 O -0.55 3.46 12.76 -148.98 -1.90 1.56 16 21 Si 0.77 -5.64 29.77 68.60 2.04 -3.60 16 22 C -0.03 0.07 9.09 22.52 0.20 0.28 16 23 C -0.13 -0.28 5.60 30.58 0.17 -0.10 16 24 C -0.11 0.09 4.69 30.58 0.14 0.23 16 25 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 26 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 27 H 0.06 -0.31 6.43 -2.39 -0.02 -0.33 16 28 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 29 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 30 H 0.05 -0.06 6.43 -2.39 -0.02 -0.08 16 31 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 32 H 0.06 -0.43 6.50 -2.39 -0.02 -0.45 16 33 H 0.08 -0.52 6.43 -2.39 -0.02 -0.54 16 34 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 35 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 36 H 0.41 -1.64 4.90 -92.71 -0.45 -2.10 16 37 H 0.17 -1.02 8.06 -2.91 -0.02 -1.05 16 38 H 0.17 -1.96 4.86 -2.91 -0.01 -1.97 16 39 H 0.12 -0.76 7.96 -2.39 -0.02 -0.77 16 40 H 0.40 -5.45 8.70 -74.06 -0.64 -6.10 16 41 H -0.30 -0.38 7.11 99.48 0.71 0.33 16 42 H -0.28 0.81 7.11 99.48 0.71 1.52 16 43 H 0.15 -1.01 6.41 -2.91 -0.02 -1.03 16 44 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 45 H 0.04 0.32 8.14 -2.38 -0.02 0.31 16 46 H 0.06 0.01 6.43 -2.39 -0.02 -0.01 16 47 H 0.06 -0.01 7.60 -2.39 -0.02 -0.03 16 Total: 0.00 -19.62 363.37 2.27 -17.35 By element: Atomic # 1 Polarization: -13.54 SS G_CDS: -0.07 Total: -13.61 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 3.41 Total: 12.39 kcal Atomic # 7 Polarization: -0.92 SS G_CDS: -1.86 Total: -2.78 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -1.96 Total: -8.69 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.70 Total: -1.07 kcal Atomic # 14 Polarization: -5.64 SS G_CDS: 2.04 Total: -3.60 kcal Total: -19.62 2.27 -17.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16623128_12335834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.072 kcal (2) G-P(sol) polarization free energy of solvation -19.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds