Wall clock time and date at job start Sun Mar 7 2021 09:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 H 1.09002 * 109.47153 * 60.00231 * 4 2 1 6 6 C 1.52999 * 109.47317 * 179.97438 * 4 2 1 7 7 C 1.53002 * 109.47628 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.46806 * 300.00074 * 7 6 4 9 9 H 1.09004 * 109.46724 * 179.97438 * 8 7 6 10 10 N 1.46496 * 109.47294 * 300.00053 * 8 7 6 11 11 C 1.34784 * 119.99820 * 274.99907 * 10 8 7 12 12 O 1.21612 * 119.99498 * 359.97438 * 11 10 8 13 13 C 1.47376 * 119.99971 * 180.02562 * 11 10 8 14 14 C 1.36421 * 127.19274 * 359.68495 * 13 11 10 15 15 O 1.33652 * 108.39741 * 179.83684 * 14 13 11 16 16 C 1.34215 * 110.90777 * 0.44498 * 15 14 13 17 17 C 1.50697 * 125.44142 * 179.72045 * 16 15 14 18 18 O 1.42896 * 109.47614 * 245.00885 * 17 16 15 19 19 Si 1.86299 * 109.46820 * 5.00733 * 17 16 15 20 20 C 1.34187 * 109.12339 * 359.73023 * 16 15 14 21 21 C 1.53002 * 109.46911 * 59.99917 * 8 7 6 22 22 C 1.52992 * 109.47482 * 300.00014 * 4 2 1 23 23 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 24 24 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 26 26 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 27 27 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 28 28 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 29 29 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 30 30 H 1.09001 * 109.47362 * 300.00732 * 6 4 2 31 31 H 1.09002 * 109.46716 * 60.00091 * 6 4 2 32 32 H 1.09001 * 109.47142 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.46838 * 59.99718 * 7 6 4 34 34 H 0.96996 * 120.00460 * 95.00469 * 10 8 7 35 35 H 1.07997 * 125.79647 * 359.97438 * 14 13 11 36 36 H 1.09001 * 109.46692 * 125.00062 * 17 16 15 37 37 H 0.96693 * 113.99896 * 59.99420 * 18 17 16 38 38 H 1.48501 * 110.00066 * 179.97438 * 19 17 16 39 39 H 1.48500 * 110.00122 * 301.31488 * 19 17 16 40 40 H 1.07995 * 127.01893 * 180.02562 * 20 16 15 41 41 H 1.09004 * 109.46930 * 179.97438 * 21 8 7 42 42 H 1.09002 * 109.47067 * 59.99825 * 21 8 7 43 43 H 1.09002 * 109.47103 * 300.00247 * 22 4 2 44 44 H 1.09001 * 109.47066 * 60.00169 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.6766 -0.2073 -2.1392 6 6 3.5699 -0.7207 -1.2497 7 6 4.0799 -1.4414 -2.4993 8 6 3.5704 -2.8840 -2.4996 9 1 3.9334 -3.3973 -3.3901 10 7 4.0592 -3.5749 -1.3038 11 6 5.2814 -4.1431 -1.3061 12 8 5.9781 -4.0826 -2.3010 13 6 5.7729 -4.8385 -0.1033 14 6 5.1217 -4.9896 1.0859 15 8 5.9092 -5.6841 1.9128 16 6 7.0718 -5.9950 1.3186 17 6 8.1993 -6.7666 1.9546 18 8 9.3441 -5.9206 2.0803 19 14 7.6742 -7.3557 3.6421 20 6 7.0701 -5.5089 0.0679 21 6 2.0404 -2.8845 -2.4993 22 6 1.5300 -2.1636 -1.2494 23 1 -0.3633 0.5140 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.6768 1.9562 0.8901 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 3.9330 0.3071 -1.2498 31 1 3.9336 -1.2344 -0.3597 32 1 5.1699 -1.4414 -2.4993 33 1 3.7162 -0.9274 -3.3890 34 1 3.5033 -3.6234 -0.5104 35 1 4.1363 -4.6140 1.3187 36 1 8.4487 -7.6253 1.3313 37 1 9.1945 -5.1345 2.6232 38 1 8.7772 -8.1187 4.2797 39 1 7.3009 -6.1962 4.4915 40 1 7.8600 -5.5934 -0.6636 41 1 1.6774 -3.9123 -2.4999 42 1 1.6767 -2.3705 -3.3890 43 1 1.8933 -2.6775 -0.3594 44 1 0.4400 -2.1636 -1.2494 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16623128_13456056.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:37:41 Heat of formation + Delta-G solvation = -68.754110 kcal Electronic energy + Delta-G solvation = -24395.028887 eV Core-core repulsion = 20893.861384 eV Total energy + Delta-G solvation = -3501.167503 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.166 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.72905 -41.29043 -39.53424 -38.16465 -36.63548 -34.33902 -33.48005 -31.92067 -31.79737 -29.75646 -27.99745 -26.71355 -25.22077 -23.74259 -23.35054 -22.33940 -21.25796 -20.83993 -20.15491 -19.41972 -17.90363 -17.55558 -17.48904 -16.88048 -16.64407 -16.22964 -15.96058 -15.70483 -15.27298 -15.00929 -14.85807 -14.62969 -14.29489 -14.23766 -14.14857 -13.97896 -13.60348 -13.36134 -13.08434 -13.06769 -12.95879 -12.59909 -12.23574 -12.14330 -12.04851 -12.01282 -11.68879 -11.30132 -11.23084 -10.99196 -10.95896 -10.82642 -10.75723 -10.12275 -9.79903 -4.91667 0.25740 0.80991 1.17635 1.52765 1.75223 1.95347 2.08759 2.25812 3.20894 3.46939 3.54918 3.67307 3.69847 3.77875 3.96649 4.05385 4.12615 4.25123 4.33010 4.34789 4.40524 4.43973 4.50287 4.55624 4.60628 4.66957 4.69355 4.79337 4.84211 4.88743 4.99952 5.04209 5.07384 5.10725 5.11938 5.17345 5.19681 5.23840 5.32001 5.37818 5.39387 5.52477 5.58548 5.64388 5.81969 6.33798 6.48882 7.16605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.088 4.088 3 C -0.153 4.153 4 C -0.078 4.078 5 H 0.067 0.933 6 C -0.108 4.108 7 C -0.129 4.129 8 C 0.148 3.852 9 H 0.065 0.935 10 N -0.700 5.700 11 C 0.585 3.415 12 O -0.588 6.588 13 C -0.268 4.268 14 C 0.064 3.936 15 O -0.164 6.164 16 C -0.050 4.050 17 C -0.047 4.047 18 O -0.540 6.540 19 Si 0.792 3.208 20 C -0.151 4.151 21 C -0.120 4.120 22 C -0.114 4.114 23 H 0.050 0.950 24 H 0.067 0.933 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.039 0.961 33 H 0.076 0.924 34 H 0.412 0.588 35 H 0.260 0.740 36 H 0.148 0.852 37 H 0.390 0.610 38 H -0.288 1.288 39 H -0.285 1.285 40 H 0.143 0.857 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.505 -0.604 4.350 8.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.106 4.106 3 C -0.210 4.210 4 C -0.096 4.096 5 H 0.086 0.914 6 C -0.146 4.146 7 C -0.167 4.167 8 C 0.043 3.957 9 H 0.083 0.917 10 N -0.353 5.353 11 C 0.374 3.626 12 O -0.469 6.469 13 C -0.273 4.273 14 C -0.006 4.006 15 O -0.060 6.060 16 C -0.098 4.098 17 C -0.154 4.154 18 O -0.348 6.348 19 Si 0.695 3.305 20 C -0.171 4.171 21 C -0.158 4.158 22 C -0.152 4.152 23 H 0.069 0.931 24 H 0.086 0.914 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.250 0.750 35 H 0.276 0.724 36 H 0.165 0.835 37 H 0.240 0.760 38 H -0.215 1.215 39 H -0.211 1.211 40 H 0.161 0.839 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.091 0.909 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.670 -1.061 4.400 8.060 hybrid contribution 0.825 1.412 -0.391 1.682 sum -5.844 0.351 4.009 7.096 Atomic orbital electron populations 1.21906 0.94992 1.02332 1.01495 1.21107 0.95816 0.95687 0.98021 1.21923 1.01020 0.96549 1.01537 1.21181 0.94164 0.96143 0.98124 0.91446 1.21556 0.95786 1.00020 0.97206 1.21879 0.99578 0.95503 0.99775 1.20945 0.95278 0.91972 0.87473 0.91710 1.45792 1.16374 1.55489 1.17651 1.17539 0.81539 0.77408 0.86111 1.90783 1.57891 1.62030 1.36199 1.21513 0.98235 1.10976 0.96539 1.25250 0.96832 0.92043 0.86475 1.83720 1.24164 1.56666 1.41408 1.22696 0.88440 1.05488 0.93166 1.24735 0.82614 0.94484 1.13608 1.86649 1.34346 1.39609 1.74231 0.93438 0.83822 0.82327 0.70926 1.22564 0.97224 1.00467 0.96858 1.21810 0.91604 1.02140 1.00251 1.21673 1.01563 0.94458 0.97466 0.93119 0.91446 0.93093 0.90868 0.92934 0.92726 0.93084 0.92146 0.91975 0.94243 0.90531 0.74961 0.72400 0.83482 0.75954 1.21456 1.21114 0.83917 0.90318 0.89827 0.90926 0.90076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.79 8.84 71.98 0.64 1.43 16 2 C -0.09 0.45 2.51 -10.79 -0.03 0.43 16 3 C -0.15 0.45 8.84 71.98 0.64 1.09 16 4 C -0.08 0.42 1.77 -10.80 -0.02 0.40 16 5 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 6 C -0.11 0.28 4.69 30.59 0.14 0.42 16 7 C -0.13 -0.12 5.60 30.60 0.17 0.05 16 8 C 0.15 -0.04 2.78 44.99 0.13 0.09 16 9 H 0.06 0.34 7.58 -2.39 -0.02 0.32 16 10 N -0.70 1.03 4.22 -445.84 -1.88 -0.86 16 11 C 0.59 3.93 7.78 86.65 0.67 4.60 16 12 O -0.59 -10.03 16.65 -4.07 -0.07 -10.10 16 13 C -0.27 -0.81 6.31 -18.99 -0.12 -0.93 16 14 C 0.06 -0.34 11.61 67.40 0.78 0.45 16 15 O -0.16 0.37 8.90 4.46 0.04 0.41 16 16 C -0.05 -0.05 6.18 24.76 0.15 0.11 16 17 C -0.05 0.06 2.97 71.23 0.21 0.27 16 18 O -0.54 -1.15 12.88 -148.98 -1.92 -3.07 16 19 Si 0.79 -2.67 32.09 68.60 2.20 -0.47 16 20 C -0.15 -0.86 10.90 23.65 0.26 -0.60 16 21 C -0.12 0.71 5.61 30.61 0.17 0.88 16 22 C -0.11 0.93 4.68 30.61 0.14 1.07 16 23 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 24 H 0.07 -0.47 6.43 -2.39 -0.02 -0.49 16 25 H 0.05 -0.22 8.14 -2.39 -0.02 -0.24 16 26 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 27 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 28 H 0.05 -0.12 6.43 -2.39 -0.02 -0.14 16 29 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.06 -0.06 6.43 -2.39 -0.02 -0.08 16 31 H 0.06 -0.17 7.61 -2.39 -0.02 -0.19 16 32 H 0.04 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.08 0.00 8.14 -2.39 -0.02 -0.02 16 34 H 0.41 -3.57 5.84 -92.71 -0.54 -4.11 16 35 H 0.26 -4.22 7.47 -2.91 -0.02 -4.24 16 36 H 0.15 -0.54 7.96 -2.39 -0.02 -0.56 16 37 H 0.39 -1.43 8.70 -74.06 -0.64 -2.08 16 38 H -0.29 -0.86 7.11 99.48 0.71 -0.16 16 39 H -0.28 -0.42 7.11 99.48 0.71 0.28 16 40 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 41 H 0.08 -0.53 8.14 -2.38 -0.02 -0.55 16 42 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 43 H 0.07 -0.79 6.51 -2.39 -0.02 -0.80 16 44 H 0.08 -0.72 6.43 -2.39 -0.02 -0.73 16 Total: 0.00 -20.56 346.90 2.17 -18.39 By element: Atomic # 1 Polarization: -13.90 SS G_CDS: -0.14 Total: -14.04 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 3.94 Total: 9.74 kcal Atomic # 7 Polarization: 1.03 SS G_CDS: -1.88 Total: -0.86 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -1.95 Total: -12.76 kcal Atomic # 14 Polarization: -2.67 SS G_CDS: 2.20 Total: -0.47 kcal Total: -20.56 2.17 -18.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16623128_13456056.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.366 kcal (2) G-P(sol) polarization free energy of solvation -20.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds