Wall clock time and date at job start Sun Mar 7 2021 09:38:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53004 * 109.46896 * 2 1
4 4 C 1.52996 * 109.47462 * 120.00128 * 2 1 3
5 5 H 1.08995 * 109.47126 * 300.00690 * 4 2 1
6 6 C 1.53004 * 109.47169 * 60.00039 * 4 2 1
7 7 C 1.52996 * 109.47169 * 179.97438 * 6 4 2
8 8 C 1.53002 * 109.46951 * 300.00063 * 7 6 4
9 9 H 1.09008 * 109.46595 * 180.02562 * 8 7 6
10 10 N 1.46501 * 109.47062 * 299.99751 * 8 7 6
11 11 C 1.34770 * 120.00122 * 275.00087 * 10 8 7
12 12 O 1.21282 * 120.00256 * 0.02562 * 11 10 8
13 13 C 1.50703 * 120.00010 * 180.02562 * 11 10 8
14 14 O 1.42902 * 109.47357 * 180.02562 * 13 11 10
15 15 C 1.35898 * 116.99694 * 180.02562 * 14 13 11
16 16 C 1.38735 * 120.05254 * 179.97438 * 15 14 13
17 17 C 1.38144 * 119.94607 * 179.97438 * 16 15 14
18 18 C 1.38266 * 120.05233 * 0.02562 * 17 16 15
19 19 C 1.50708 * 119.94156 * 179.97438 * 18 17 16
20 20 O 1.42901 * 109.46774 * 120.00182 * 19 18 17
21 21 Si 1.86295 * 109.47138 * 359.97438 * 19 18 17
22 22 C 1.38269 * 120.11595 * 359.95530 * 18 17 16
23 23 C 1.38142 * 120.04935 * 0.04230 * 22 18 17
24 24 C 1.52991 * 109.46933 * 60.00268 * 8 7 6
25 25 C 1.52997 * 109.47600 * 299.99532 * 24 8 7
26 26 H 1.09004 * 109.47526 * 299.99198 * 1 2 3
27 27 H 1.09001 * 109.47904 * 59.99857 * 1 2 3
28 28 H 1.09002 * 109.46991 * 180.02562 * 1 2 3
29 29 H 1.08995 * 109.46989 * 240.00625 * 2 1 3
30 30 H 1.09008 * 109.46815 * 59.99880 * 3 2 1
31 31 H 1.08997 * 109.47094 * 179.97438 * 3 2 1
32 32 H 1.09001 * 109.46960 * 300.00721 * 3 2 1
33 33 H 1.09006 * 109.47144 * 300.00508 * 6 4 2
34 34 H 1.09004 * 109.46605 * 59.99706 * 6 4 2
35 35 H 1.09002 * 109.46796 * 180.02562 * 7 6 4
36 36 H 1.08995 * 109.47126 * 60.00651 * 7 6 4
37 37 H 0.96998 * 119.99602 * 95.00196 * 10 8 7
38 38 H 1.08999 * 109.46805 * 59.99992 * 13 11 10
39 39 H 1.08998 * 109.47364 * 300.00344 * 13 11 10
40 40 H 1.08002 * 120.02704 * 359.70561 * 16 15 14
41 41 H 1.08001 * 119.97447 * 179.97438 * 17 16 15
42 42 H 1.08998 * 109.47022 * 239.99836 * 19 18 17
43 43 H 0.96702 * 113.99901 * 299.99382 * 20 19 18
44 44 H 1.48493 * 110.00085 * 180.02562 * 21 19 18
45 45 H 1.48509 * 109.99954 * 301.32068 * 21 19 18
46 46 H 1.07992 * 119.97577 * 180.02562 * 22 18 17
47 47 H 1.08005 * 120.02253 * 180.02562 * 23 22 18
48 48 H 1.08999 * 109.47616 * 59.99813 * 24 8 7
49 49 H 1.09006 * 109.46841 * 179.97438 * 24 8 7
50 50 H 1.08989 * 109.47870 * 180.02562 * 25 24 8
51 51 H 1.09008 * 109.47039 * 300.00619 * 25 24 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 2.0401 -0.7212 1.2492
5 1 1.6767 -0.2075 2.1391
6 6 1.5301 -2.1638 1.2492
7 6 2.0407 -2.8852 2.4980
8 6 3.5707 -2.8851 2.4973
9 1 3.9345 -3.3996 3.3868
10 7 4.0585 -3.5756 1.3007
11 6 4.1873 -4.9171 1.3023
12 8 3.8989 -5.5529 2.2940
13 6 4.6896 -5.6272 0.0716
14 8 4.7372 -7.0338 0.3193
15 6 5.1721 -7.8248 -0.6966
16 6 5.2441 -9.1996 -0.5248
17 6 5.6860 -10.0015 -1.5592
18 6 6.0569 -9.4351 -2.7647
19 6 6.5391 -10.3123 -3.8913
20 8 5.6802 -10.1508 -5.0219
21 14 6.5186 -12.0930 -3.3443
22 6 5.9857 -8.0652 -2.9386
23 6 5.5444 -7.2590 -1.9073
24 6 4.0806 -1.4427 2.4973
25 6 3.5701 -0.7211 1.2485
26 1 -0.3634 0.5137 0.8901
27 1 -0.3635 0.5138 -0.8899
28 1 -0.3633 -1.0277 0.0005
29 1 1.8933 -0.5137 -0.8900
30 1 1.6765 1.9564 0.8901
31 1 3.1299 1.4426 0.0005
32 1 1.6765 1.9564 -0.8899
33 1 0.4400 -2.1638 1.2491
34 1 1.8934 -2.6775 0.3591
35 1 1.6778 -3.9130 2.4977
36 1 1.6777 -2.3717 3.3882
37 1 4.2888 -3.0671 0.5075
38 1 5.6888 -5.2670 -0.1733
39 1 4.0171 -5.4282 -0.7627
40 1 4.9590 -9.6421 0.4182
41 1 5.7426 -11.0718 -1.4259
42 1 7.5555 -10.0279 -4.1636
43 1 4.7578 -10.3861 -4.8518
44 1 6.9926 -12.9683 -4.4461
45 1 7.3836 -12.2674 -2.1497
46 1 6.2756 -7.6252 -3.8813
47 1 5.4886 -6.1890 -2.0437
48 1 3.7176 -0.9290 3.3876
49 1 5.1706 -1.4426 2.4973
50 1 3.9336 0.3063 1.2483
51 1 3.9330 -1.2348 0.3582
There are 63 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 63
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
s_22_16623128_2989410.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 7 2021 09:38:09
Heat of formation + Delta-G solvation = -96.388040 kcal
Electronic energy + Delta-G solvation = -28873.155528 eV
Core-core repulsion = 24931.488349 eV
Total energy + Delta-G solvation = -3941.667179 eV
No. of doubly occupied orbitals = 63
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 334.198 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-41.69225 -41.09325 -39.79445 -38.86741 -37.15525 -36.64296 -33.91168 -32.21594
-32.06222 -31.98435 -30.51837 -28.87377 -28.14562 -26.23610 -24.34259 -23.86453
-23.49532 -22.56842 -21.89689 -20.97332 -20.28885 -19.46221 -18.60040 -18.14564
-17.50320 -17.12530 -16.85952 -16.55999 -16.37385 -15.97583 -15.74467 -15.50238
-15.38436 -15.11769 -14.93923 -14.77125 -14.68193 -14.40676 -14.23828 -14.17751
-13.98574 -13.56063 -13.45057 -13.29491 -13.20531 -13.20030 -12.73019 -12.37462
-12.27471 -12.17753 -12.15936 -12.11931 -12.04565 -11.84058 -11.68219 -11.46219
-11.10934 -10.94057 -10.86228 -10.43127 -10.11147 -10.06769 -9.21199 -5.03030
0.23931 0.33398 1.30770 1.45417 1.50999 1.63629 1.97941 2.56045
2.65205 3.43921 3.47597 3.52945 3.57487 3.63614 3.69729 3.73854
3.86379 3.86916 3.89007 3.91504 4.01349 4.13600 4.20857 4.23888
4.26780 4.36762 4.41329 4.45826 4.52109 4.54939 4.55216 4.58233
4.69009 4.69550 4.84135 4.88913 4.93117 4.97104 4.97816 5.02273
5.03220 5.10478 5.15987 5.18680 5.23070 5.26721 5.27997 5.42208
5.44235 5.46728 5.48473 5.64178 6.23239 6.38959 6.57557 7.11638
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.092 4.092
3 C -0.151 4.151
4 C -0.083 4.083
5 H 0.073 0.927
6 C -0.114 4.114
7 C -0.132 4.132
8 C 0.148 3.852
9 H 0.090 0.910
10 N -0.719 5.719
11 C 0.516 3.484
12 O -0.513 6.513
13 C 0.040 3.960
14 O -0.288 6.288
15 C 0.134 3.866
16 C -0.141 4.141
17 C -0.076 4.076
18 C -0.158 4.158
19 C -0.063 4.063
20 O -0.542 6.542
21 Si 0.686 3.314
22 C -0.051 4.051
23 C -0.210 4.210
24 C -0.128 4.128
25 C -0.118 4.118
26 H 0.054 0.946
27 H 0.053 0.947
28 H 0.057 0.943
29 H 0.067 0.933
30 H 0.054 0.946
31 H 0.057 0.943
32 H 0.053 0.947
33 H 0.067 0.933
34 H 0.060 0.940
35 H 0.069 0.931
36 H 0.074 0.926
37 H 0.400 0.600
38 H 0.093 0.907
39 H 0.094 0.906
40 H 0.138 0.862
41 H 0.134 0.866
42 H 0.112 0.888
43 H 0.379 0.621
44 H -0.255 1.255
45 H -0.258 1.258
46 H 0.130 0.870
47 H 0.129 0.871
48 H 0.081 0.919
49 H 0.070 0.930
50 H 0.072 0.928
51 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.475 3.909 -1.746 4.528
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.110 4.110
3 C -0.208 4.208
4 C -0.102 4.102
5 H 0.091 0.909
6 C -0.152 4.152
7 C -0.171 4.171
8 C 0.045 3.955
9 H 0.108 0.892
10 N -0.375 5.375
11 C 0.300 3.700
12 O -0.386 6.386
13 C -0.039 4.039
14 O -0.200 6.200
15 C 0.088 3.912
16 C -0.160 4.160
17 C -0.093 4.093
18 C -0.158 4.158
19 C -0.174 4.174
20 O -0.347 6.347
21 Si 0.589 3.411
22 C -0.069 4.069
23 C -0.229 4.229
24 C -0.166 4.166
25 C -0.155 4.155
26 H 0.073 0.927
27 H 0.072 0.928
28 H 0.076 0.924
29 H 0.086 0.914
30 H 0.073 0.927
31 H 0.076 0.924
32 H 0.072 0.928
33 H 0.086 0.914
34 H 0.079 0.921
35 H 0.087 0.913
36 H 0.092 0.908
37 H 0.236 0.764
38 H 0.111 0.889
39 H 0.112 0.888
40 H 0.156 0.844
41 H 0.151 0.849
42 H 0.130 0.870
43 H 0.226 0.774
44 H -0.180 1.180
45 H -0.182 1.182
46 H 0.147 0.853
47 H 0.147 0.853
48 H 0.100 0.900
49 H 0.089 0.911
50 H 0.090 0.910
51 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -0.715 2.844 -0.940 3.080
hybrid contribution 0.482 1.087 -0.626 1.344
sum -0.233 3.931 -1.567 4.238
Atomic orbital electron populations
1.21908 0.95193 1.01906 1.01828 1.21138 0.95850 0.96148 0.97877
1.21913 1.01100 0.95933 1.01865 1.21246 0.94831 0.95752 0.98346
0.90907 1.21618 1.00774 0.94836 0.97952 1.21939 0.94789 1.01462
0.98891 1.20987 0.94092 0.92430 0.88039 0.89218 1.45953 1.67970
1.06068 1.17463 1.20004 0.78416 0.82611 0.88944 1.90781 1.47981
1.65608 1.34278 1.22483 1.02979 0.81138 0.97313 1.86170 1.80893
1.16266 1.36649 1.19077 0.94356 0.90894 0.86843 1.20410 1.04598
0.90188 1.00788 1.20838 0.97054 0.99225 0.92220 1.20251 1.04636
0.95059 0.95891 1.24964 0.96160 1.08736 0.87523 1.86493 1.22995
1.90830 1.34400 0.94732 0.90604 0.75968 0.79829 1.20789 0.95505
0.92524 0.98097 1.21288 1.07258 1.00595 0.93740 1.21847 1.01066
0.94053 0.99636 1.21665 0.95570 1.00887 0.97402 0.92672 0.92763
0.92384 0.91409 0.92670 0.92418 0.92761 0.91441 0.92148 0.91266
0.90769 0.76446 0.88882 0.88831 0.84432 0.84894 0.87038 0.77362
1.18011 1.18247 0.85254 0.85276 0.90017 0.91118 0.90978 0.92295
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 0.24 8.84 37.16 0.33 0.56 16
2 C -0.09 0.19 2.50 -90.62 -0.23 -0.03 16
3 C -0.15 0.30 8.84 37.16 0.33 0.63 16
4 C -0.08 0.20 1.78 -90.62 -0.16 0.04 16
5 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16
6 C -0.11 0.20 4.69 -26.73 -0.13 0.07 16
7 C -0.13 0.09 5.60 -26.73 -0.15 -0.06 16
8 C 0.15 -0.15 2.78 -67.93 -0.19 -0.34 16
9 H 0.09 0.09 7.58 -51.92 -0.39 -0.31 16
10 N -0.72 1.16 4.23 -53.81 -0.23 0.93 16
11 C 0.52 0.70 7.87 -10.99 -0.09 0.61 16
12 O -0.51 -3.19 16.16 -14.35 -0.23 -3.42 16
13 C 0.04 -0.03 5.22 36.01 0.19 0.16 16
14 O -0.29 -0.81 9.67 -39.33 -0.38 -1.19 16
15 C 0.13 0.23 6.69 -39.22 -0.26 -0.03 16
16 C -0.14 -0.18 9.99 -39.43 -0.39 -0.58 16
17 C -0.08 -0.01 8.66 -39.61 -0.34 -0.35 16
18 C -0.16 -0.04 5.39 -104.60 -0.56 -0.61 16
19 C -0.06 0.01 2.82 36.01 0.10 0.11 16
20 O -0.54 -0.10 12.77 -35.23 -0.45 -0.55 16
21 Si 0.69 -0.60 29.78 -169.99 -5.06 -5.66 16
22 C -0.05 -0.02 9.60 -39.61 -0.38 -0.40 16
23 C -0.21 -0.02 9.04 -39.44 -0.36 -0.38 16
24 C -0.13 0.35 5.61 -26.74 -0.15 0.20 16
25 C -0.12 0.38 4.68 -26.73 -0.13 0.25 16
26 H 0.05 -0.07 8.14 -51.93 -0.42 -0.49 16
27 H 0.05 -0.07 8.14 -51.93 -0.42 -0.49 16
28 H 0.06 -0.09 6.43 -51.93 -0.33 -0.42 16
29 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16
30 H 0.05 -0.09 8.14 -51.92 -0.42 -0.51 16
31 H 0.06 -0.14 6.43 -51.93 -0.33 -0.47 16
32 H 0.05 -0.09 8.14 -51.93 -0.42 -0.51 16
33 H 0.07 -0.08 6.43 -51.93 -0.33 -0.42 16
34 H 0.06 -0.10 7.60 -51.93 -0.39 -0.50 16
35 H 0.07 0.10 8.14 -51.93 -0.42 -0.32 16
36 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16
37 H 0.40 -1.67 6.87 -40.82 -0.28 -1.95 16
38 H 0.09 -0.29 7.66 -51.93 -0.40 -0.68 16
39 H 0.09 -0.30 7.66 -51.93 -0.40 -0.69 16
40 H 0.14 0.08 8.06 -52.49 -0.42 -0.34 16
41 H 0.13 -0.24 4.87 -52.49 -0.26 -0.49 16
42 H 0.11 0.03 7.96 -51.93 -0.41 -0.39 16
43 H 0.38 -1.35 8.70 45.56 0.40 -0.95 16
44 H -0.26 -0.61 7.11 56.52 0.40 -0.21 16
45 H -0.26 -0.38 7.11 56.52 0.40 0.02 16
46 H 0.13 -0.06 8.06 -52.49 -0.42 -0.49 16
47 H 0.13 -0.30 6.30 -52.48 -0.33 -0.63 16
48 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16
49 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16
50 H 0.07 -0.22 6.43 -51.94 -0.33 -0.56 16
51 H 0.06 -0.23 6.51 -51.92 -0.34 -0.57 16
LS Contribution 392.39 15.07 5.91 5.91
Total: 0.00 -7.95 392.39 -11.42 -19.37
By element:
Atomic # 1 Polarization: -6.84 SS G_CDS: -8.41 Total: -15.26 kcal
Atomic # 6 Polarization: 2.44 SS G_CDS: -2.57 Total: -0.13 kcal
Atomic # 7 Polarization: 1.16 SS G_CDS: -0.23 Total: 0.93 kcal
Atomic # 8 Polarization: -4.10 SS G_CDS: -1.06 Total: -5.16 kcal
Atomic # 14 Polarization: -0.60 SS G_CDS: -5.06 Total: -5.66 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -7.95 -11.42 -19.37 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_16623128_2989410.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -77.023 kcal
(2) G-P(sol) polarization free energy of solvation -7.947 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.970 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.418 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.365 kcal
(6) G-S(sol) free energy of system = (1) + (5) -96.388 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds