Wall clock time and date at job start Sun Mar 7 2021 09:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46817 * 2 1 4 4 C 1.52992 * 109.47106 * 120.00244 * 2 1 3 5 5 H 1.09002 * 109.47103 * 299.99915 * 4 2 1 6 6 C 1.52997 * 109.47482 * 60.00162 * 4 2 1 7 7 C 1.53000 * 109.47060 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47233 * 299.99657 * 7 6 4 9 9 H 1.08993 * 109.47662 * 180.02562 * 8 7 6 10 10 N 1.46506 * 109.47042 * 300.00642 * 8 7 6 11 11 C 1.34775 * 119.99531 * 204.99548 * 10 8 7 12 12 O 1.21277 * 120.00525 * 0.02562 * 11 10 8 13 13 C 1.50706 * 119.99541 * 179.97438 * 11 10 8 14 14 O 1.42902 * 109.46691 * 180.02562 * 13 11 10 15 15 C 1.35907 * 116.99839 * 179.97438 * 14 13 11 16 16 C 1.38708 * 120.05544 * 179.72455 * 15 14 13 17 17 N 1.48003 * 120.02765 * 0.02562 * 16 15 14 18 18 O 1.21806 * 120.00083 * 180.02562 * 17 16 15 19 19 O 1.21800 * 120.00334 * 0.02562 * 17 16 15 20 20 C 1.38167 * 119.94266 * 179.79796 * 16 15 14 21 21 C 1.38245 * 120.05351 * 0.48073 * 20 16 15 22 22 C 1.50696 * 119.94161 * 179.77112 * 21 20 16 23 23 O 1.42901 * 109.47365 * 299.98026 * 22 21 20 24 24 Si 1.86298 * 109.47138 * 179.97438 * 22 21 20 25 25 C 1.38281 * 120.11391 * 359.75068 * 21 20 16 26 26 C 1.38125 * 120.05504 * 0.02562 * 25 21 20 27 27 C 1.52997 * 109.46817 * 60.00194 * 8 7 6 28 28 C 1.52999 * 109.46961 * 180.02562 * 4 2 1 29 29 H 1.09002 * 109.47596 * 299.99825 * 1 2 3 30 30 H 1.08996 * 109.47407 * 60.00219 * 1 2 3 31 31 H 1.09000 * 109.46986 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47070 * 240.00180 * 2 1 3 33 33 H 1.09002 * 109.47153 * 60.00231 * 3 2 1 34 34 H 1.09001 * 109.47289 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47261 * 300.00059 * 3 2 1 36 36 H 1.09002 * 109.47153 * 59.99783 * 6 4 2 37 37 H 1.09001 * 109.46832 * 299.99974 * 6 4 2 38 38 H 1.08992 * 109.47399 * 59.99823 * 7 6 4 39 39 H 1.09004 * 109.46724 * 180.02562 * 7 6 4 40 40 H 0.97000 * 120.00279 * 24.99489 * 10 8 7 41 41 H 1.08999 * 109.46969 * 300.00191 * 13 11 10 42 42 H 1.08993 * 109.46821 * 60.00664 * 13 11 10 43 43 H 1.07997 * 119.96956 * 180.23504 * 20 16 15 44 44 H 1.09004 * 109.47386 * 59.98164 * 22 21 20 45 45 H 0.96705 * 113.99861 * 300.00168 * 23 22 21 46 46 H 1.48499 * 110.00400 * 179.97438 * 24 22 21 47 47 H 1.48500 * 109.99961 * 301.32032 * 24 22 21 48 48 H 1.08001 * 119.97701 * 179.97438 * 25 21 20 49 49 H 1.08004 * 120.02962 * 180.02562 * 26 25 21 50 50 H 1.09002 * 109.47153 * 60.00231 * 27 8 7 51 51 H 1.09001 * 109.47289 * 180.02562 * 27 8 7 52 52 H 1.09000 * 109.47486 * 59.99547 * 28 4 2 53 53 H 1.09002 * 109.46716 * 299.99630 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6767 -0.2075 2.1392 6 6 1.5301 -2.1638 1.2491 7 6 2.0396 -2.8848 2.4987 8 6 3.5696 -2.8848 2.4993 9 1 3.9327 -3.3988 3.3892 10 7 4.0584 -3.5755 1.3034 11 6 5.2804 -4.1440 1.3057 12 8 5.9752 -4.0841 2.2980 13 6 5.7830 -4.8550 0.0757 14 8 7.0928 -5.3694 0.3247 15 6 7.6941 -6.0438 -0.6905 16 6 8.9681 -6.5651 -0.5196 17 7 9.6741 -6.3880 0.7690 18 8 10.7930 -6.8456 0.9184 19 8 9.1363 -5.7846 1.6802 20 6 9.5755 -7.2540 -1.5519 21 6 8.9186 -7.4153 -2.7575 22 6 9.5855 -8.1626 -3.8834 23 8 10.8023 -7.5026 -4.2384 24 14 8.4491 -8.2060 -5.3590 25 6 7.6504 -6.8924 -2.9320 26 6 7.0370 -6.2069 -1.9016 27 6 4.0795 -1.4423 2.4993 28 6 3.5700 -0.7207 1.2494 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.8934 -2.6776 0.3591 37 1 0.4401 -2.1638 1.2492 38 1 1.6759 -2.3709 3.3884 39 1 1.6767 -3.9126 2.4984 40 1 3.5026 -3.6237 0.5099 41 1 5.1105 -5.6771 -0.1690 42 1 5.8199 -4.1550 -0.7590 43 1 10.5659 -7.6633 -1.4180 44 1 9.8047 -9.1814 -3.5637 45 1 10.6828 -6.5894 -4.5334 46 1 9.0955 -8.9397 -6.4766 47 1 7.1677 -8.8617 -4.9941 48 1 7.1394 -7.0193 -3.8750 49 1 6.0463 -5.7990 -2.0382 50 1 3.7158 -0.9283 3.3891 51 1 5.1695 -1.4422 2.4993 52 1 3.9330 0.3071 1.2496 53 1 3.9336 -1.2343 0.3594 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16623128_4549638.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:38:49 Heat of formation + Delta-G solvation = -88.158261 kcal Electronic energy + Delta-G solvation = -35673.399842 eV Core-core repulsion = 30901.073098 eV Total energy + Delta-G solvation = -4772.326744 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.192 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -43.29876 -41.84296 -41.21040 -39.94710 -39.15955 -37.59800 -37.37969 -36.60151 -33.91936 -33.44118 -32.24331 -31.90138 -30.60259 -28.95888 -27.97818 -27.82897 -26.54888 -24.35771 -23.77997 -23.34166 -22.86598 -22.07276 -20.82338 -20.56307 -20.14608 -19.77912 -19.15275 -18.64530 -18.60821 -18.13248 -17.59711 -17.19400 -16.85615 -16.55685 -16.33499 -16.08986 -15.82211 -15.60425 -15.28952 -15.04862 -14.95523 -14.75335 -14.64252 -14.32582 -14.11330 -14.02298 -13.87498 -13.71851 -13.35125 -13.23295 -13.08675 -13.05496 -12.71309 -12.58023 -12.38144 -12.28415 -12.25842 -12.20392 -12.19067 -12.02915 -11.99154 -11.94523 -11.66470 -11.27330 -11.00165 -10.94051 -10.84184 -10.79890 -10.56501 -10.09215 -9.79205 -4.99481 -1.32053 -0.24690 0.15094 0.35012 1.22436 1.27681 1.48975 1.64232 2.02150 2.05176 2.35917 3.11667 3.24944 3.39039 3.50827 3.61174 3.69595 3.70904 3.72785 3.79231 3.80306 3.92131 4.00294 4.07148 4.14877 4.28019 4.29742 4.35542 4.35690 4.42534 4.50682 4.57498 4.61364 4.62934 4.68686 4.71278 4.82125 4.83576 4.85975 5.01959 5.06286 5.06877 5.08879 5.13243 5.18091 5.19875 5.21762 5.25798 5.33889 5.39597 5.41588 5.52920 5.60752 5.66572 5.76044 6.41028 6.47991 6.73342 7.18890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.087 4.087 3 C -0.153 4.153 4 C -0.079 4.079 5 H 0.063 0.937 6 C -0.113 4.113 7 C -0.120 4.120 8 C 0.150 3.850 9 H 0.061 0.939 10 N -0.699 5.699 11 C 0.507 3.493 12 O -0.566 6.566 13 C 0.024 3.976 14 O -0.291 6.291 15 C 0.193 3.807 16 C -0.105 4.105 17 N 0.034 4.966 18 O -0.203 6.203 19 O -0.174 6.174 20 C -0.004 4.004 21 C -0.150 4.150 22 C -0.083 4.083 23 O -0.558 6.558 24 Si 0.800 3.200 25 C -0.004 4.004 26 C -0.188 4.188 27 C -0.130 4.130 28 C -0.107 4.107 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.418 0.582 41 H 0.142 0.858 42 H 0.145 0.855 43 H 0.149 0.851 44 H 0.109 0.891 45 H 0.398 0.602 46 H -0.306 1.306 47 H -0.263 1.263 48 H 0.189 0.811 49 H 0.206 0.794 50 H 0.071 0.929 51 H 0.040 0.960 52 H 0.059 0.941 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.112 2.602 -12.024 17.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.105 4.105 3 C -0.211 4.211 4 C -0.097 4.097 5 H 0.081 0.919 6 C -0.150 4.150 7 C -0.158 4.158 8 C 0.045 3.955 9 H 0.079 0.921 10 N -0.355 5.355 11 C 0.292 3.708 12 O -0.444 6.444 13 C -0.053 4.053 14 O -0.201 6.201 15 C 0.144 3.856 16 C -0.190 4.190 17 N 0.544 4.456 18 O -0.411 6.411 19 O -0.388 6.388 20 C -0.023 4.023 21 C -0.151 4.151 22 C -0.191 4.191 23 O -0.366 6.366 24 Si 0.703 3.297 25 C -0.021 4.021 26 C -0.207 4.207 27 C -0.169 4.169 28 C -0.145 4.145 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.257 0.743 41 H 0.160 0.840 42 H 0.162 0.838 43 H 0.167 0.833 44 H 0.127 0.873 45 H 0.248 0.752 46 H -0.234 1.234 47 H -0.189 1.189 48 H 0.206 0.794 49 H 0.223 0.777 50 H 0.090 0.910 51 H 0.059 0.941 52 H 0.078 0.922 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.057 1.556 -12.044 17.113 hybrid contribution 0.954 -0.211 1.361 1.675 sum -11.103 1.346 -10.683 15.467 Atomic orbital electron populations 1.21912 0.95204 1.02275 1.01405 1.21101 0.95642 0.95671 0.98101 1.21928 1.01130 0.96569 1.01434 1.21184 0.94382 0.96129 0.98009 0.91901 1.21656 1.01422 0.94449 0.97506 1.21792 0.91724 1.02081 1.00204 1.20891 0.95104 0.91947 0.87554 0.92061 1.45763 1.16353 1.55573 1.17813 1.20510 0.82161 0.79027 0.89072 1.90845 1.57147 1.59907 1.36472 1.23136 0.82639 1.01844 0.97674 1.86480 1.31839 1.65989 1.35830 1.18984 0.88810 0.88664 0.89192 1.20867 0.95035 1.16806 0.86298 1.43914 1.00447 0.97902 1.03339 1.94503 1.05789 1.52014 1.88754 1.94682 1.68718 1.40417 1.34981 1.20836 1.00291 0.91374 0.89788 1.20459 0.96388 1.03453 0.94847 1.25486 0.93921 0.97295 1.02367 1.86531 1.29793 1.32482 1.87821 0.93794 0.74743 0.88191 0.72947 1.21721 0.91888 0.88800 0.99739 1.21816 1.03986 1.05211 0.89667 1.21890 0.99671 0.95522 0.99788 1.21566 0.95561 1.00065 0.97264 0.93379 0.93048 0.91478 0.90462 0.93381 0.92531 0.92890 0.90432 0.90383 0.90279 0.90333 0.74267 0.84016 0.83788 0.83288 0.87323 0.75185 1.23447 1.18906 0.79414 0.77669 0.91030 0.94089 0.92217 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.97 8.84 71.98 0.64 1.61 16 2 C -0.09 0.60 2.51 -10.80 -0.03 0.57 16 3 C -0.15 0.68 8.84 71.98 0.64 1.32 16 4 C -0.08 0.55 1.77 -10.80 -0.02 0.53 16 5 H 0.06 -0.28 8.14 -2.39 -0.02 -0.30 16 6 C -0.11 1.11 4.68 30.59 0.14 1.26 16 7 C -0.12 0.87 5.61 30.60 0.17 1.04 16 8 C 0.15 -0.33 2.78 44.99 0.13 -0.20 16 9 H 0.06 0.26 7.58 -2.39 -0.02 0.24 16 10 N -0.70 4.10 4.23 -442.53 -1.87 2.23 16 11 C 0.51 0.64 7.87 87.66 0.69 1.33 16 12 O -0.57 -8.63 16.16 16.02 0.26 -8.37 16 13 C 0.02 -0.17 5.22 71.24 0.37 0.20 16 14 O -0.29 -1.34 7.68 -63.48 -0.49 -1.82 16 15 C 0.19 0.10 6.67 22.51 0.15 0.25 16 16 C -0.10 -0.75 6.87 36.47 0.25 -0.50 16 17 N 0.03 0.59 4.45 -46.24 -0.21 0.38 16 18 O -0.20 -3.89 18.45 18.88 0.35 -3.54 16 19 O -0.17 -3.87 17.24 25.61 0.44 -3.42 16 20 C 0.00 -0.01 9.11 22.25 0.20 0.20 16 21 C -0.15 0.87 5.39 -19.85 -0.11 0.76 16 22 C -0.08 0.52 2.82 71.23 0.20 0.72 16 23 O -0.56 1.99 12.77 -148.98 -1.90 0.09 16 24 Si 0.80 -8.36 29.78 68.60 2.04 -6.32 16 25 C 0.00 0.05 8.66 22.25 0.19 0.24 16 26 C -0.19 2.09 9.04 22.37 0.20 2.29 16 27 C -0.13 0.07 5.60 30.61 0.17 0.24 16 28 C -0.11 0.51 4.70 30.61 0.14 0.65 16 29 H 0.05 -0.23 8.14 -2.39 -0.02 -0.25 16 30 H 0.05 -0.28 8.14 -2.39 -0.02 -0.30 16 31 H 0.07 -0.55 6.43 -2.39 -0.02 -0.56 16 32 H 0.08 -0.64 8.14 -2.39 -0.02 -0.66 16 33 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 34 H 0.06 -0.23 6.43 -2.39 -0.02 -0.24 16 35 H 0.05 -0.22 8.14 -2.38 -0.02 -0.24 16 36 H 0.08 -1.03 6.51 -2.39 -0.02 -1.05 16 37 H 0.08 -0.78 6.43 -2.39 -0.02 -0.79 16 38 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 39 H 0.08 -0.64 8.14 -2.39 -0.02 -0.66 16 40 H 0.42 -5.78 6.87 -92.71 -0.64 -6.42 16 41 H 0.14 -2.25 7.66 -2.39 -0.02 -2.27 16 42 H 0.14 -2.34 7.66 -2.39 -0.02 -2.35 16 43 H 0.15 0.62 7.61 -2.91 -0.02 0.60 16 44 H 0.11 -0.46 7.96 -2.39 -0.02 -0.48 16 45 H 0.40 -4.89 8.70 -74.05 -0.64 -5.54 16 46 H -0.31 0.17 7.11 99.48 0.71 0.88 16 47 H -0.26 2.25 7.11 99.48 0.71 2.96 16 48 H 0.19 -3.72 4.87 -2.91 -0.01 -3.74 16 49 H 0.21 -4.36 6.30 -2.91 -0.02 -4.38 16 50 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 51 H 0.04 0.23 8.14 -2.39 -0.02 0.21 16 52 H 0.06 -0.17 6.43 -2.39 -0.02 -0.18 16 53 H 0.07 -0.45 7.61 -2.39 -0.02 -0.47 16 Total: 0.00 -37.48 418.43 2.47 -35.01 By element: Atomic # 1 Polarization: -26.44 SS G_CDS: -0.28 Total: -26.72 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: 4.14 Total: 12.50 kcal Atomic # 7 Polarization: 4.69 SS G_CDS: -2.08 Total: 2.61 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -1.34 Total: -17.07 kcal Atomic # 14 Polarization: -8.36 SS G_CDS: 2.04 Total: -6.32 kcal Total: -37.48 2.47 -35.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16623128_4549638.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.147 kcal (2) G-P(sol) polarization free energy of solvation -37.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds