Wall clock time and date at job start Sun Mar 7 2021 09:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47165 * 2 1 4 4 C 1.53002 * 109.47066 * 119.99605 * 2 1 3 5 5 H 1.09002 * 109.47097 * 300.00046 * 4 2 1 6 6 C 1.53005 * 109.47197 * 59.99847 * 4 2 1 7 7 C 1.52997 * 109.47452 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.46817 * 300.00239 * 7 6 4 9 9 H 1.09004 * 109.46733 * 179.97438 * 8 7 6 10 10 N 1.46496 * 109.47037 * 299.99555 * 8 7 6 11 11 C 1.34776 * 120.00390 * 275.00000 * 10 8 7 12 12 O 1.21698 * 119.99492 * 0.02562 * 11 10 8 13 13 C 1.46676 * 120.00030 * 180.02562 * 11 10 8 14 14 C 1.37872 * 126.22885 * 180.02562 * 13 11 10 15 15 C 1.39844 * 107.08143 * 179.97438 * 14 13 11 16 16 C 1.35447 * 107.86403 * 0.02562 * 15 14 13 17 17 C 1.50708 * 125.56310 * 180.02562 * 16 15 14 18 18 O 1.42901 * 109.47116 * 244.97438 * 17 16 15 19 19 Si 1.86294 * 109.46875 * 4.97200 * 17 16 15 20 20 N 1.35535 * 108.87455 * 359.76338 * 16 15 14 21 21 C 1.53000 * 109.47233 * 60.00194 * 8 7 6 22 22 C 1.52997 * 109.47060 * 299.99657 * 21 8 7 23 23 H 1.09002 * 109.47726 * 300.00407 * 1 2 3 24 24 H 1.09000 * 109.46925 * 60.00283 * 1 2 3 25 25 H 1.08996 * 109.47340 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47726 * 239.99593 * 2 1 3 27 27 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.46724 * 299.99231 * 3 2 1 29 29 H 1.08992 * 109.47399 * 59.99717 * 3 2 1 30 30 H 1.09002 * 109.46935 * 60.00099 * 6 4 2 31 31 H 1.09001 * 109.46812 * 300.00441 * 6 4 2 32 32 H 1.08993 * 109.47194 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.46695 * 59.99734 * 7 6 4 34 34 H 0.97001 * 119.99395 * 95.00922 * 10 8 7 35 35 H 1.07993 * 126.45917 * 359.93319 * 14 13 11 36 36 H 1.07997 * 126.06236 * 179.97438 * 15 14 13 37 37 H 1.08992 * 109.46756 * 124.97644 * 17 16 15 38 38 H 0.96693 * 114.00536 * 179.97438 * 18 17 16 39 39 H 1.48503 * 109.99663 * 178.68197 * 19 17 16 40 40 H 1.48497 * 110.00546 * 300.00163 * 19 17 16 41 41 H 0.96998 * 125.67692 * 180.26175 * 20 16 15 42 42 H 1.09002 * 109.47398 * 59.99826 * 21 8 7 43 43 H 1.09001 * 109.47194 * 180.02562 * 21 8 7 44 44 H 1.08996 * 109.47853 * 180.02562 * 22 21 8 45 45 H 1.09002 * 109.47153 * 300.00319 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1393 6 6 1.5299 -2.1637 1.2494 7 6 2.0393 -2.8847 2.4990 8 6 3.5693 -2.8847 2.4996 9 1 3.9322 -3.3980 3.3901 10 7 4.0581 -3.5756 1.3039 11 6 4.1869 -4.9172 1.3060 12 8 3.8966 -5.5547 2.3011 13 6 4.6768 -5.6088 0.1089 14 6 4.8567 -6.9686 -0.0303 15 6 5.3355 -7.1892 -1.3255 16 6 5.4379 -5.9870 -1.9410 17 6 5.9147 -5.7630 -3.3530 18 8 7.1361 -5.0214 -3.3313 19 14 6.2014 -7.4076 -4.1798 20 7 5.0360 -5.0189 -1.0818 21 6 4.0793 -1.4422 2.4996 22 6 3.5699 -0.7212 1.2501 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9562 -0.8901 29 1 1.6766 1.9563 0.8899 30 1 1.8932 -2.6776 0.3595 31 1 0.4399 -2.1636 1.2494 32 1 1.6756 -3.9122 2.4993 33 1 1.6756 -2.3706 3.3887 34 1 4.2892 -3.0674 0.5106 35 1 4.6648 -7.7214 0.7199 36 1 5.5808 -8.1480 -1.7579 37 1 5.1604 -5.2044 -3.9068 38 1 7.5020 -4.8404 -4.2078 39 1 6.6415 -7.2007 -5.5830 40 1 7.2280 -8.1790 -3.4341 41 1 5.0078 -4.0685 -1.2735 42 1 3.7156 -0.9282 3.3894 43 1 5.1693 -1.4422 2.4996 44 1 3.9335 0.3063 1.2497 45 1 3.9336 -1.2352 0.3603 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16623128_6580494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:39:38 Heat of formation + Delta-G solvation = -42.522345 kcal Electronic energy + Delta-G solvation = -24482.798005 eV Core-core repulsion = 21080.486658 eV Total energy + Delta-G solvation = -3402.311346 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.55463 -41.13139 -39.49168 -37.82149 -36.69286 -33.97976 -32.16828 -31.96806 -31.54859 -29.81868 -28.02898 -26.82795 -24.21371 -23.45397 -23.24030 -21.66494 -21.22742 -20.83495 -20.21939 -19.75525 -18.64091 -17.16042 -16.99473 -16.67114 -16.30196 -15.90700 -15.50453 -15.21183 -15.13346 -14.95432 -14.78456 -14.57591 -14.26583 -14.18406 -14.07077 -13.90611 -13.53785 -13.41483 -13.13720 -13.09649 -12.71592 -12.63104 -12.28339 -12.09232 -12.05348 -12.01109 -11.73459 -11.35526 -11.30193 -11.01935 -10.86002 -10.63814 -10.21236 -10.09263 -9.28520 -4.83884 0.28358 1.20989 1.51801 1.65166 1.93978 2.02581 2.17538 2.27189 3.26740 3.60315 3.64695 3.72009 3.78071 3.81750 4.01196 4.08964 4.18619 4.22992 4.26436 4.29364 4.36134 4.45404 4.51215 4.55408 4.61287 4.65154 4.75979 4.81161 4.93473 4.95707 5.00755 5.01779 5.07223 5.09333 5.13175 5.14399 5.18981 5.27919 5.31822 5.35207 5.46298 5.53955 5.58966 5.60683 5.76919 6.26243 6.44139 6.53454 7.04246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 C -0.150 4.150 4 C -0.077 4.077 5 H 0.071 0.929 6 C -0.108 4.108 7 C -0.128 4.128 8 C 0.147 3.853 9 H 0.070 0.930 10 N -0.707 5.707 11 C 0.589 3.411 12 O -0.570 6.570 13 C -0.064 4.064 14 C -0.118 4.118 15 C -0.208 4.208 16 C 0.069 3.931 17 C -0.066 4.066 18 O -0.561 6.561 19 Si 0.787 3.213 20 N -0.513 5.513 21 C -0.122 4.122 22 C -0.114 4.114 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.080 0.920 34 H 0.405 0.595 35 H 0.147 0.853 36 H 0.164 0.836 37 H 0.106 0.894 38 H 0.401 0.599 39 H -0.279 1.279 40 H -0.299 1.299 41 H 0.426 0.574 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.330 4.301 -5.904 7.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.107 4.107 3 C -0.207 4.207 4 C -0.096 4.096 5 H 0.089 0.911 6 C -0.145 4.145 7 C -0.166 4.166 8 C 0.043 3.957 9 H 0.088 0.912 10 N -0.359 5.359 11 C 0.377 3.623 12 O -0.449 6.449 13 C -0.177 4.177 14 C -0.145 4.145 15 C -0.232 4.232 16 C -0.050 4.050 17 C -0.174 4.174 18 O -0.372 6.372 19 Si 0.690 3.310 20 N -0.110 5.110 21 C -0.160 4.160 22 C -0.152 4.152 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.242 0.758 35 H 0.165 0.835 36 H 0.182 0.818 37 H 0.124 0.876 38 H 0.252 0.748 39 H -0.205 1.205 40 H -0.227 1.227 41 H 0.266 0.734 42 H 0.106 0.894 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.099 3.539 -4.934 6.170 hybrid contribution 0.827 1.328 -0.476 1.635 sum -0.272 4.866 -5.409 7.281 Atomic orbital electron populations 1.21911 0.95603 1.01741 1.01657 1.21101 0.95478 0.96220 0.97852 1.21906 1.01471 0.95722 1.01642 1.21183 0.95186 0.94916 0.98273 0.91078 1.21553 1.00575 0.95250 0.97171 1.21874 0.94737 1.00252 0.99757 1.20996 0.94091 0.93340 0.87318 0.91224 1.45894 1.66777 1.05669 1.17606 1.17212 0.76894 0.82397 0.85794 1.90836 1.52417 1.66986 1.34702 1.20342 1.15686 0.93884 0.87825 1.21468 1.01662 0.93594 0.97734 1.20894 1.09502 0.97883 0.94877 1.20194 1.03505 0.88496 0.92777 1.24740 0.88858 1.09496 0.94305 1.86534 1.39425 1.75115 1.36111 0.93415 0.87503 0.75233 0.74822 1.41853 1.49455 1.09810 1.09893 1.21812 1.01166 0.92659 1.00317 1.21652 0.95048 1.01266 0.97205 0.92889 0.92884 0.92564 0.91288 0.91817 0.92996 0.92897 0.92446 0.91696 0.93643 0.90175 0.75836 0.83506 0.81847 0.87605 0.74769 1.20515 1.22677 0.73409 0.89364 0.90881 0.90195 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.43 8.84 71.98 0.64 1.07 16 2 C -0.09 0.38 2.51 -10.80 -0.03 0.35 16 3 C -0.15 0.66 8.84 71.98 0.64 1.29 16 4 C -0.08 0.35 1.77 -10.79 -0.02 0.33 16 5 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 6 C -0.11 0.23 4.69 30.60 0.14 0.37 16 7 C -0.13 -0.11 5.60 30.59 0.17 0.06 16 8 C 0.15 0.10 2.78 44.99 0.13 0.22 16 9 H 0.07 0.38 7.58 -2.39 -0.02 0.36 16 10 N -0.71 -0.45 4.23 -446.50 -1.89 -2.33 16 11 C 0.59 4.63 7.75 86.45 0.67 5.30 16 12 O -0.57 -9.25 16.55 -4.34 -0.07 -9.32 16 13 C -0.06 -0.36 7.06 40.35 0.28 -0.07 16 14 C -0.12 -0.79 10.65 22.57 0.24 -0.55 16 15 C -0.21 -0.59 9.32 22.01 0.21 -0.38 16 16 C 0.07 0.05 6.50 41.34 0.27 0.32 16 17 C -0.07 0.28 3.07 71.24 0.22 0.50 16 18 O -0.56 1.12 12.86 -148.98 -1.92 -0.80 16 19 Si 0.79 -3.59 30.56 68.60 2.10 -1.49 16 20 N -0.51 0.02 5.99 -171.93 -1.03 -1.01 16 21 C -0.12 0.52 5.61 30.59 0.17 0.69 16 22 C -0.11 0.71 4.68 30.59 0.14 0.85 16 23 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 24 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 25 H 0.06 -0.13 6.43 -2.39 -0.02 -0.15 16 26 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 27 H 0.06 -0.35 6.43 -2.39 -0.02 -0.37 16 28 H 0.05 -0.19 8.14 -2.39 -0.02 -0.21 16 29 H 0.05 -0.19 8.14 -2.39 -0.02 -0.21 16 30 H 0.06 -0.09 7.61 -2.39 -0.02 -0.11 16 31 H 0.06 -0.08 6.43 -2.39 -0.02 -0.10 16 32 H 0.04 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 34 H 0.40 -1.88 6.00 -92.71 -0.56 -2.44 16 35 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 36 H 0.16 -0.16 6.19 -2.91 -0.02 -0.18 16 37 H 0.11 -1.02 7.96 -2.39 -0.02 -1.04 16 38 H 0.40 -4.04 8.74 -74.06 -0.65 -4.69 16 39 H -0.28 0.36 7.11 99.48 0.71 1.06 16 40 H -0.30 -1.15 7.11 99.48 0.71 -0.45 16 41 H 0.43 -2.42 8.19 -92.71 -0.76 -3.18 16 42 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 43 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 44 H 0.08 -0.55 6.43 -2.39 -0.02 -0.56 16 45 H 0.06 -0.48 6.51 -2.39 -0.02 -0.50 16 Total: 0.00 -17.97 348.03 0.14 -17.82 By element: Atomic # 1 Polarization: -12.31 SS G_CDS: -0.92 Total: -13.23 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: 3.87 Total: 10.35 kcal Atomic # 7 Polarization: -0.42 SS G_CDS: -2.92 Total: -3.34 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -1.99 Total: -10.12 kcal Atomic # 14 Polarization: -3.59 SS G_CDS: 2.10 Total: -1.49 kcal Total: -17.97 0.14 -17.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16623128_6580494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.698 kcal (2) G-P(sol) polarization free energy of solvation -17.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds