Wall clock time and date at job start Sun Mar 7 2021 09:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86302 * 109.47386 * 2 1 4 4 C 1.50707 * 109.46862 * 240.00627 * 2 1 3 5 5 C 1.38318 * 119.92372 * 119.99949 * 4 2 1 6 6 C 1.38464 * 120.28039 * 180.02562 * 5 4 2 7 7 Br 1.89102 * 119.93710 * 179.97438 * 6 5 4 8 8 C 1.38025 * 120.12763 * 359.97438 * 6 5 4 9 9 C 1.39586 * 119.84064 * 0.02562 * 8 6 5 10 10 C 1.47850 * 120.13600 * 179.97438 * 9 8 6 11 11 O 1.21557 * 119.99556 * 179.97438 * 10 9 8 12 12 N 1.34768 * 120.00517 * 0.02562 * 10 9 8 13 13 C 1.46499 * 120.00208 * 180.02562 * 12 10 9 14 14 H 1.08992 * 109.47084 * 324.99146 * 13 12 10 15 15 C 1.52996 * 109.47369 * 84.99778 * 13 12 10 16 16 C 1.52997 * 109.47165 * 59.99956 * 15 13 12 17 17 C 1.52999 * 109.47592 * 60.00300 * 16 15 13 18 18 H 1.09000 * 109.47160 * 59.99666 * 17 16 15 19 19 N 1.46492 * 109.47381 * 179.97438 * 17 16 15 20 20 O 1.21801 * 120.00382 * 239.99812 * 19 17 16 21 21 O 1.21805 * 120.00128 * 59.99877 * 19 17 16 22 22 C 1.53006 * 109.46626 * 300.00035 * 17 16 15 23 23 C 1.52997 * 109.47164 * 59.99702 * 22 17 16 24 24 C 1.37990 * 119.91680 * 300.25652 * 4 2 1 25 25 H 0.96696 * 114.00129 * 59.98798 * 1 2 3 26 26 H 1.08998 * 109.47403 * 120.00770 * 2 1 3 27 27 H 1.48499 * 110.00021 * 298.68737 * 3 2 1 28 28 H 1.48507 * 109.99482 * 60.00363 * 3 2 1 29 29 H 1.07998 * 119.86026 * 0.02562 * 5 4 2 30 30 H 1.07998 * 120.08190 * 180.02562 * 8 6 5 31 31 H 0.97001 * 119.99903 * 359.97438 * 12 10 9 32 32 H 1.09000 * 109.47054 * 179.97438 * 15 13 12 33 33 H 1.09001 * 109.46997 * 299.99697 * 15 13 12 34 34 H 1.09000 * 109.47140 * 299.99954 * 16 15 13 35 35 H 1.09002 * 109.47045 * 180.02562 * 16 15 13 36 36 H 1.09001 * 109.46998 * 179.97438 * 22 17 16 37 37 H 1.09000 * 109.47050 * 299.99699 * 22 17 16 38 38 H 1.09000 * 109.47140 * 60.00051 * 23 22 17 39 39 H 1.09001 * 109.47230 * 179.97438 * 23 22 17 40 40 H 1.07994 * 120.06776 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 2.7264 -0.0365 -2.1400 6 6 3.1915 -0.6818 -3.2734 7 35 4.2773 0.2490 -4.5106 8 6 2.8642 -2.0030 -3.5019 9 6 2.0621 -2.6880 -2.5876 10 6 1.7070 -4.1033 -2.8261 11 8 1.0088 -4.6974 -2.0280 12 7 2.1582 -4.7348 -3.9278 13 6 1.8058 -6.1370 -4.1644 14 1 1.7572 -6.6650 -3.2122 15 6 0.4444 -6.2106 -4.8585 16 6 0.5126 -5.4695 -6.1952 17 6 1.5744 -6.1190 -7.0850 18 1 1.3123 -7.1622 -7.2610 19 7 1.6393 -5.4096 -8.3651 20 8 1.4140 -6.0051 -9.4034 21 8 1.9186 -4.2243 -8.3911 22 6 2.9359 -6.0453 -6.3908 23 6 2.8676 -6.7865 -5.0541 24 6 1.5925 -2.0298 -1.4501 25 1 -0.3933 0.4418 -0.7649 26 1 1.7924 -0.5139 0.8899 27 1 1.5879 2.4586 -1.2241 28 1 1.5616 2.4678 1.2086 29 1 2.9855 0.9973 -1.9653 30 1 3.2277 -2.5057 -4.3859 31 1 2.7157 -4.2608 -4.5645 32 1 0.1824 -7.2539 -5.0349 33 1 -0.3121 -5.7479 -4.2246 34 1 0.7748 -4.4262 -6.0192 35 1 -0.4575 -5.5215 -6.6895 36 1 3.6923 -6.5084 -7.0245 37 1 3.1981 -5.0020 -6.2148 38 1 2.6055 -7.8298 -5.2301 39 1 3.8377 -6.7344 -4.5598 40 1 0.9686 -2.5534 -0.7410 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16623254_12335870.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:41:12 Heat of formation + Delta-G solvation = -40.673635 kcal Electronic energy + Delta-G solvation = -27670.920479 eV Core-core repulsion = 23501.667488 eV Total energy + Delta-G solvation = -4169.252991 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 385.040 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.42544 -41.79541 -40.52299 -39.13516 -37.83223 -37.54192 -35.32929 -33.62687 -33.39441 -32.30845 -31.55676 -30.45733 -27.44104 -27.00738 -25.42284 -24.21245 -23.33609 -22.82608 -21.96142 -20.72713 -19.83276 -19.36498 -19.27913 -18.29866 -18.06476 -17.69812 -17.27223 -16.77008 -16.50652 -16.37681 -16.01626 -15.65949 -15.33783 -15.07855 -14.95391 -14.64012 -14.28448 -14.19370 -13.92802 -13.72189 -13.63688 -13.30754 -13.04097 -12.69484 -12.63583 -12.52570 -12.31950 -12.24286 -12.19231 -11.97451 -11.85606 -11.79308 -11.63415 -11.47363 -11.22814 -10.74565 -10.43515 -10.17782 -9.91636 -4.98523 -0.65895 -0.53352 -0.17675 0.43605 0.66418 1.19596 1.50369 1.54388 1.87757 1.95148 2.44427 2.94043 3.00136 3.23332 3.29759 3.40817 3.45432 3.55225 3.70323 3.77852 3.85193 3.88192 3.92550 3.94983 4.08780 4.19362 4.26783 4.28654 4.35035 4.54024 4.63708 4.71133 4.75281 4.80935 4.83351 4.90201 4.92498 5.03818 5.07241 5.21080 5.29629 5.37834 6.27343 6.37212 6.40484 6.97762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.081 4.081 3 Si 0.759 3.241 4 C -0.113 4.113 5 C -0.061 4.061 6 C -0.099 4.099 7 Br -0.030 7.030 8 C -0.046 4.046 9 C -0.137 4.137 10 C 0.564 3.436 11 O -0.565 6.565 12 N -0.710 5.710 13 C 0.139 3.861 14 H 0.096 0.904 15 C -0.120 4.120 16 C -0.118 4.118 17 C 0.019 3.981 18 H 0.155 0.845 19 N -0.013 5.013 20 O -0.201 6.201 21 O -0.168 6.168 22 C -0.124 4.124 23 C -0.111 4.111 24 C -0.028 4.028 25 H 0.388 0.612 26 H 0.133 0.867 27 H -0.275 1.275 28 H -0.297 1.297 29 H 0.155 0.845 30 H 0.158 0.842 31 H 0.409 0.591 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.104 0.896 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.767 -1.765 1.281 5.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.190 4.190 3 Si 0.663 3.337 4 C -0.115 4.115 5 C -0.081 4.081 6 C -0.179 4.179 7 Br 0.056 6.944 8 C -0.066 4.066 9 C -0.141 4.141 10 C 0.352 3.648 11 O -0.445 6.445 12 N -0.363 5.363 13 C 0.035 3.965 14 H 0.114 0.886 15 C -0.159 4.159 16 C -0.157 4.157 17 C -0.077 4.077 18 H 0.173 0.827 19 N 0.506 4.494 20 O -0.414 6.414 21 O -0.392 6.392 22 C -0.162 4.162 23 C -0.149 4.149 24 C -0.047 4.047 25 H 0.237 0.763 26 H 0.150 0.850 27 H -0.201 1.201 28 H -0.225 1.225 29 H 0.173 0.827 30 H 0.175 0.825 31 H 0.248 0.752 32 H 0.122 0.878 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.526 -1.776 2.537 5.484 hybrid contribution -1.388 0.127 -0.885 1.652 sum 3.137 -1.649 1.652 3.910 Atomic orbital electron populations 1.86612 1.18137 1.80303 1.50257 1.25265 0.83705 1.11859 0.98172 0.94213 0.90299 0.71911 0.77295 1.20268 0.99253 0.94356 0.97602 1.21378 0.94587 1.00527 0.91571 1.21743 1.03048 0.95837 0.97226 1.96877 1.65585 1.75383 1.56555 1.21433 0.94262 0.92460 0.98450 1.19904 1.02647 0.94029 0.97570 1.18244 0.79171 0.86175 0.81225 1.90812 1.39058 1.67792 1.46817 1.46014 1.53086 1.13460 1.23750 1.21160 0.94155 0.81132 1.00092 0.88598 1.21886 0.97934 1.02612 0.93454 1.21839 0.96900 1.01306 0.95640 1.24647 1.02597 1.00277 0.80191 0.82704 1.45454 0.96664 1.01455 1.05788 1.94596 1.53076 1.68336 1.25396 1.94533 1.49424 1.00408 1.94799 1.21981 0.91825 1.04373 0.98048 1.21822 1.00379 1.00899 0.91819 1.21256 0.94775 0.93454 0.95226 0.76290 0.84967 1.20127 1.22480 0.82741 0.82492 0.75190 0.87773 0.91134 0.89790 0.90404 0.88661 0.89171 0.87075 0.87748 0.84866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.64 12.76 -148.98 -1.90 -2.54 16 2 C -0.08 0.21 2.82 71.24 0.20 0.41 16 3 Si 0.76 -2.90 29.78 68.60 2.04 -0.86 16 4 C -0.11 0.24 5.39 -19.90 -0.11 0.14 16 5 C -0.06 0.22 8.41 22.34 0.19 0.40 16 6 C -0.10 0.30 6.22 22.27 0.14 0.44 16 7 Br -0.03 0.08 33.69 -20.37 -0.69 -0.61 16 8 C -0.05 0.19 9.28 22.54 0.21 0.40 16 9 C -0.14 0.10 5.87 -20.09 -0.12 -0.02 16 10 C 0.56 0.48 7.74 86.79 0.67 1.15 16 11 O -0.57 -4.91 16.01 -3.90 -0.06 -4.97 16 12 N -0.71 4.31 4.18 -445.42 -1.86 2.45 16 13 C 0.14 -1.11 2.78 44.99 0.13 -0.98 16 14 H 0.10 -0.48 7.57 -2.39 -0.02 -0.50 16 15 C -0.12 0.88 5.60 30.59 0.17 1.05 16 16 C -0.12 0.72 5.15 30.59 0.16 0.88 16 17 C 0.02 -0.13 2.88 44.99 0.13 0.00 16 18 H 0.16 -1.51 8.09 -2.39 -0.02 -1.53 16 19 N -0.01 -0.03 3.82 -169.39 -0.65 -0.68 16 20 O -0.20 -1.55 19.21 18.89 0.36 -1.19 16 21 O -0.17 -0.95 18.51 18.88 0.35 -0.60 16 22 C -0.12 1.31 5.13 30.60 0.16 1.46 16 23 C -0.11 1.45 5.61 30.59 0.17 1.62 16 24 C -0.03 -0.02 9.15 22.53 0.21 0.18 16 25 H 0.39 -1.74 8.70 -74.06 -0.64 -2.38 16 26 H 0.13 -0.55 7.96 -2.39 -0.02 -0.57 16 27 H -0.28 0.12 7.11 99.48 0.71 0.83 16 28 H -0.30 -1.22 7.11 99.48 0.71 -0.51 16 29 H 0.16 -1.00 4.86 -2.91 -0.01 -1.02 16 30 H 0.16 -1.41 6.41 -2.91 -0.02 -1.42 16 31 H 0.41 -4.09 4.90 -92.71 -0.45 -4.55 16 32 H 0.10 -1.12 8.14 -2.39 -0.02 -1.14 16 33 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 34 H 0.08 -0.38 7.49 -2.39 -0.02 -0.39 16 35 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 36 H 0.09 -1.01 8.14 -2.39 -0.02 -1.03 16 37 H 0.09 -0.96 6.39 -2.39 -0.02 -0.98 16 38 H 0.11 -1.75 8.14 -2.39 -0.02 -1.77 16 39 H 0.10 -1.48 8.14 -2.39 -0.02 -1.50 16 40 H 0.13 0.50 7.65 -2.91 -0.02 0.48 16 Total: 0.00 -20.36 353.06 -0.05 -20.41 By element: Atomic # 1 Polarization: -18.60 SS G_CDS: 0.05 Total: -18.55 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 2.30 Total: 7.14 kcal Atomic # 7 Polarization: 4.28 SS G_CDS: -2.51 Total: 1.77 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -1.25 Total: -9.30 kcal Atomic # 14 Polarization: -2.90 SS G_CDS: 2.04 Total: -0.86 kcal Atomic # 35 Polarization: 0.08 SS G_CDS: -0.69 Total: -0.61 kcal Total: -20.36 -0.05 -20.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16623254_12335870.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.267 kcal (2) G-P(sol) polarization free energy of solvation -20.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds