Wall clock time and date at job start Sun Mar 7 2021 09:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86296 * 109.47437 * 2 1 4 4 C 1.50707 * 109.47011 * 240.00288 * 2 1 3 5 5 C 1.38401 * 119.82381 * 299.99794 * 4 2 1 6 6 C 1.37896 * 120.17260 * 179.97438 * 5 4 2 7 7 C 1.39836 * 119.82040 * 0.02562 * 6 5 4 8 8 C 1.47206 * 120.16905 * 179.97438 * 7 6 5 9 9 C 1.34804 * 120.00217 * 180.02562 * 8 7 6 10 10 C 1.46436 * 119.99915 * 180.02562 * 9 8 7 11 11 O 1.21693 * 120.00137 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99666 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99531 * 179.97438 * 12 10 9 14 14 H 1.08993 * 109.47068 * 325.00127 * 13 12 10 15 15 C 1.52997 * 109.46949 * 85.00076 * 13 12 10 16 16 C 1.53005 * 109.47452 * 59.99848 * 15 13 12 17 17 C 1.52999 * 109.47159 * 59.99536 * 16 15 13 18 18 H 1.09002 * 109.46716 * 60.00455 * 17 16 15 19 19 N 1.46500 * 109.46944 * 180.02562 * 17 16 15 20 20 O 1.21798 * 119.99944 * 239.99832 * 19 17 16 21 21 O 1.21802 * 120.00115 * 60.00791 * 19 17 16 22 22 C 1.52997 * 109.47317 * 300.00546 * 17 16 15 23 23 C 1.53000 * 109.47060 * 59.99960 * 22 17 16 24 24 C 1.39838 * 119.66595 * 0.25360 * 7 6 5 25 25 C 1.37894 * 119.81850 * 359.46912 * 24 7 6 26 26 H 0.96699 * 113.99929 * 59.99370 * 1 2 3 27 27 H 1.08996 * 109.47404 * 119.99959 * 2 1 3 28 28 H 1.48507 * 110.00138 * 298.68302 * 3 2 1 29 29 H 1.48497 * 110.00271 * 59.99994 * 3 2 1 30 30 H 1.07998 * 119.91745 * 359.97438 * 5 4 2 31 31 H 1.07992 * 120.09209 * 180.02562 * 6 5 4 32 32 H 1.08004 * 119.99498 * 0.02562 * 8 7 6 33 33 H 1.07996 * 120.00049 * 359.97438 * 9 8 7 34 34 H 0.97000 * 120.00190 * 359.97438 * 12 10 9 35 35 H 1.09002 * 109.47153 * 179.97438 * 15 13 12 36 36 H 1.09001 * 109.47289 * 299.99924 * 15 13 12 37 37 H 1.09000 * 109.47360 * 180.02562 * 16 15 13 38 38 H 1.09002 * 109.46935 * 300.00125 * 16 15 13 39 39 H 1.09002 * 109.47153 * 299.99641 * 22 17 16 40 40 H 1.09001 * 109.46832 * 179.97438 * 22 17 16 41 41 H 1.08992 * 109.47399 * 59.99823 * 23 22 17 42 42 H 1.09004 * 109.46724 * 180.02562 * 23 22 17 43 43 H 1.07993 * 120.08984 * 179.74993 * 24 7 6 44 44 H 1.08002 * 119.91293 * 180.27632 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2306 5 6 1.5947 -2.0354 -1.4460 6 6 2.0500 -2.6923 -2.5698 7 6 2.8541 -2.0160 -3.4926 8 6 3.3447 -2.7099 -4.6945 9 6 4.1201 -2.0549 -5.5816 10 6 4.6077 -2.7451 -6.7776 11 8 4.3133 -3.9100 -6.9704 12 7 5.3834 -2.0904 -7.6642 13 6 5.8716 -2.7810 -8.8604 14 1 6.0763 -3.8241 -8.6196 15 6 4.8095 -2.7103 -9.9594 16 6 4.5221 -1.2460 -10.2975 17 6 5.8068 -0.5737 -10.7858 18 1 6.1701 -1.0875 -11.6758 19 7 5.5318 0.8285 -11.1089 20 8 5.7201 1.2412 -12.2392 21 8 5.1149 1.5816 -10.2472 22 6 6.8690 -0.6444 -9.6868 23 6 7.1563 -2.1087 -9.3488 24 6 3.1946 -0.6790 -3.2649 25 6 2.7268 -0.0344 -2.1392 26 1 -0.3933 0.4418 -0.7650 27 1 1.7923 -0.5138 0.8899 28 1 1.5879 2.4586 -1.2243 29 1 1.5616 2.4679 1.2084 30 1 0.9740 -2.5564 -0.7321 31 1 1.7862 -3.7261 -2.7368 32 1 3.0834 -3.7438 -4.8656 33 1 4.3810 -1.0210 -5.4108 34 1 5.6183 -1.1619 -7.5103 35 1 5.1729 -3.2237 -10.8496 36 1 3.8942 -3.1892 -9.6115 37 1 3.7651 -1.1956 -11.0801 38 1 4.1589 -0.7321 -9.4075 39 1 6.5057 -0.1306 -8.7968 40 1 7.7843 -0.1659 -10.0349 41 1 7.5196 -2.6225 -10.2388 42 1 7.9127 -2.1591 -8.5656 43 1 3.8185 -0.1514 -3.9710 44 1 2.9851 0.9995 -1.9641 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16623254_12360594.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:41:20 Heat of formation + Delta-G solvation = -32.573648 kcal Electronic energy + Delta-G solvation = -27760.575181 eV Core-core repulsion = 23647.727675 eV Total energy + Delta-G solvation = -4112.847506 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.41642 -41.31401 -40.59846 -39.25811 -37.90715 -37.53843 -35.16353 -35.06395 -32.34812 -32.28389 -31.99701 -30.99506 -27.60153 -26.85394 -24.44477 -24.17461 -23.92496 -23.24327 -22.24873 -20.71787 -20.57434 -19.77000 -19.30440 -18.93584 -18.29635 -18.24729 -17.33808 -16.79370 -16.74331 -16.49580 -16.21803 -15.95012 -15.58593 -15.26223 -15.09218 -14.93204 -14.61293 -14.50761 -14.16343 -13.96758 -13.79998 -13.69767 -13.61359 -13.25641 -13.05054 -12.68057 -12.62098 -12.50734 -12.27917 -12.21608 -12.18667 -12.10523 -11.76496 -11.63208 -11.60654 -11.35602 -11.08476 -10.62853 -10.20449 -9.98276 -9.25139 -4.92650 -0.64814 -0.55542 0.39325 0.67166 0.88178 1.30539 1.59996 1.96559 2.14268 2.22844 2.80723 2.95798 3.02289 3.38412 3.45576 3.53009 3.58337 3.68358 3.73494 3.79877 3.90405 3.94025 3.95329 4.10490 4.18269 4.20868 4.31348 4.35681 4.36378 4.46397 4.56832 4.65555 4.74419 4.82814 4.84475 4.86491 4.94167 4.99176 5.05834 5.09598 5.16263 5.22011 5.37399 5.44237 5.47803 5.59965 5.89930 6.38281 6.45742 6.48205 7.18235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.087 4.087 3 Si 0.769 3.231 4 C -0.109 4.109 5 C -0.108 4.108 6 C -0.103 4.103 7 C -0.081 4.081 8 C -0.020 4.020 9 C -0.212 4.212 10 C 0.546 3.454 11 O -0.586 6.586 12 N -0.710 5.710 13 C 0.139 3.861 14 H 0.089 0.911 15 C -0.120 4.120 16 C -0.117 4.117 17 C 0.020 3.980 18 H 0.153 0.847 19 N -0.012 5.012 20 O -0.204 6.204 21 O -0.166 6.166 22 C -0.122 4.122 23 C -0.110 4.110 24 C -0.095 4.095 25 C -0.122 4.122 26 H 0.386 0.614 27 H 0.125 0.875 28 H -0.280 1.280 29 H -0.307 1.307 30 H 0.129 0.871 31 H 0.136 0.864 32 H 0.123 0.877 33 H 0.161 0.839 34 H 0.413 0.587 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.157 0.843 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.534 -0.474 0.854 5.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.196 4.196 3 Si 0.675 3.325 4 C -0.110 4.110 5 C -0.126 4.126 6 C -0.121 4.121 7 C -0.081 4.081 8 C -0.040 4.040 9 C -0.232 4.232 10 C 0.336 3.664 11 O -0.469 6.469 12 N -0.363 5.363 13 C 0.034 3.966 14 H 0.107 0.893 15 C -0.159 4.159 16 C -0.155 4.155 17 C -0.077 4.077 18 H 0.170 0.830 19 N 0.507 4.493 20 O -0.416 6.416 21 O -0.390 6.390 22 C -0.160 4.160 23 C -0.148 4.148 24 C -0.113 4.113 25 C -0.139 4.139 26 H 0.235 0.765 27 H 0.143 0.857 28 H -0.206 1.206 29 H -0.236 1.236 30 H 0.147 0.853 31 H 0.154 0.846 32 H 0.141 0.859 33 H 0.178 0.822 34 H 0.251 0.749 35 H 0.118 0.882 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.125 0.875 42 H 0.121 0.879 43 H 0.174 0.826 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.404 -1.519 1.336 5.770 hybrid contribution -1.489 0.414 -0.554 1.642 sum 3.915 -1.105 0.782 4.142 Atomic orbital electron populations 1.86577 1.18558 1.80379 1.50216 1.25309 0.83447 1.12028 0.98788 0.94088 0.90249 0.71801 0.76383 1.20540 0.98514 0.95001 0.96929 1.21075 0.99506 0.94278 0.97697 1.21613 0.96347 1.00581 0.93565 1.19129 0.99511 0.94579 0.94910 1.22360 0.91650 0.99179 0.90794 1.23044 1.03021 1.02294 0.94876 1.18655 0.78015 0.85903 0.83805 1.90823 1.59339 1.18622 1.78076 1.45958 1.51504 1.16266 1.22532 1.21066 0.93377 0.98086 0.84078 0.89251 1.21872 1.00474 0.93578 0.99938 1.21828 0.93322 0.97429 1.02958 1.24641 1.01576 0.75999 1.05477 0.82967 1.45454 0.97112 1.06937 0.99847 1.94596 1.56594 1.82569 1.07861 1.94523 1.45512 1.56705 1.42226 1.21965 0.96910 1.00488 0.96674 1.21795 0.96467 0.92224 1.04330 1.21655 0.98794 0.93290 0.97519 1.21182 0.97955 1.00557 0.94242 0.76460 0.85742 1.20630 1.23551 0.85332 0.84585 0.85910 0.82165 0.74862 0.88202 0.91301 0.90567 0.89472 0.88770 0.88877 0.87540 0.87874 0.82561 0.83387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.00 12.76 -148.98 -1.90 -2.90 16 2 C -0.09 0.16 2.82 71.24 0.20 0.36 16 3 Si 0.77 -2.63 29.77 68.60 2.04 -0.59 16 4 C -0.11 0.18 5.40 -19.79 -0.11 0.07 16 5 C -0.11 0.01 9.59 22.23 0.21 0.22 16 6 C -0.10 0.04 9.80 22.58 0.22 0.27 16 7 C -0.08 0.11 5.87 -20.15 -0.12 -0.01 16 8 C -0.02 0.01 9.46 23.84 0.23 0.24 16 9 C -0.21 0.73 9.41 23.62 0.22 0.95 16 10 C 0.55 0.17 7.71 86.38 0.67 0.84 16 11 O -0.59 -5.39 15.89 -4.32 -0.07 -5.46 16 12 N -0.71 4.55 4.23 -446.75 -1.89 2.66 16 13 C 0.14 -1.02 2.78 44.99 0.13 -0.89 16 14 H 0.09 -0.32 7.57 -2.39 -0.02 -0.34 16 15 C -0.12 0.79 5.60 30.60 0.17 0.96 16 16 C -0.12 0.68 5.15 30.60 0.16 0.84 16 17 C 0.02 -0.12 2.88 44.99 0.13 0.01 16 18 H 0.15 -1.39 8.09 -2.39 -0.02 -1.41 16 19 N -0.01 -0.03 3.82 -169.39 -0.65 -0.68 16 20 O -0.20 -1.61 19.21 18.89 0.36 -1.24 16 21 O -0.17 -0.89 18.50 18.88 0.35 -0.54 16 22 C -0.12 1.27 5.13 30.59 0.16 1.43 16 23 C -0.11 1.37 5.61 30.60 0.17 1.54 16 24 C -0.10 0.41 9.41 22.58 0.21 0.63 16 25 C -0.12 0.49 8.65 22.23 0.19 0.69 16 26 H 0.39 -1.41 8.70 -74.06 -0.64 -2.06 16 27 H 0.12 -0.39 7.96 -2.39 -0.02 -0.40 16 28 H -0.28 0.00 7.11 99.48 0.71 0.71 16 29 H -0.31 -1.56 7.11 99.48 0.71 -0.85 16 30 H 0.13 -0.06 8.06 -2.91 -0.02 -0.08 16 31 H 0.14 -0.34 8.06 -2.91 -0.02 -0.37 16 32 H 0.12 0.23 7.52 -2.91 -0.02 0.21 16 33 H 0.16 -1.63 6.07 -2.91 -0.02 -1.65 16 34 H 0.41 -4.62 6.85 -92.71 -0.63 -5.25 16 35 H 0.10 -0.97 8.14 -2.39 -0.02 -0.99 16 36 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 37 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 38 H 0.09 -0.40 7.49 -2.39 -0.02 -0.42 16 39 H 0.09 -1.03 6.39 -2.39 -0.02 -1.05 16 40 H 0.09 -0.97 8.14 -2.39 -0.02 -0.99 16 41 H 0.11 -1.57 8.14 -2.39 -0.02 -1.59 16 42 H 0.10 -1.40 8.14 -2.39 -0.02 -1.42 16 43 H 0.16 -1.57 6.17 -2.91 -0.02 -1.59 16 44 H 0.15 -1.21 4.85 -2.91 -0.01 -1.22 16 Total: 0.00 -22.72 366.28 0.90 -21.82 By element: Atomic # 1 Polarization: -21.02 SS G_CDS: -0.19 Total: -21.21 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 2.84 Total: 8.14 kcal Atomic # 7 Polarization: 4.52 SS G_CDS: -2.54 Total: 1.98 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -1.26 Total: -10.15 kcal Atomic # 14 Polarization: -2.63 SS G_CDS: 2.04 Total: -0.59 kcal Total: -22.72 0.90 -21.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16623254_12360594.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.750 kcal (2) G-P(sol) polarization free energy of solvation -22.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds